Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm TMEM39B 55116 hgsc.bcm.edu hg19 1 32540608 32540608 + Nonsense_Mutation SNP G G T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . TMEM39B NM_018056 exon2 c.G61T p.G21X GAGCCGGGATCCT . 68.0 44.0 62.0 0.0 . 66 . . Atlas-SNP CSMD2 114784 hgsc.bcm.edu hg19 1 34238304 34238304 + Missense_Mutation SNP C C T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc CSMD2_ENST00000373381,colon,carcinoma,-1,2 CSMD2 NM_052896 exon13 c.G1592A p.R531Q TCCCTCCGGCCAT . 50.0 39.0 60.0 0.0 . 946 . . Atlas-SNP JAK1 3716 hgsc.bcm.edu hg19 1 65310503 65310503 + Missense_Mutation SNP T T A novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc JAK1,NS,carcinoma,0,2 JAK1 NM_002227 exon16 c.A2185T p.S729C ACTCACTGTCGAT . 96.0 72.0 125.0 0.0 . 209 . . Atlas-SNP LHX8 431707 hgsc.bcm.edu hg19 1 75602886 75602886 + Silent SNP T T A novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . LHX8 NM_001001933 exon4 c.T207A p.P69P CTGCCCTCCTGGC . 153.0 69.0 219.0 0.0 . 73 . . Atlas-SNP RUSC1-AS1 284618 hgsc.bcm.edu hg19 1 155291207 155291207 + Missense_Mutation SNP G G C novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . . NM_001039517 exon2 c.C73G p.P25A GGCCCGGACCTCT . 109.0 39.0 127.0 0.0 . . . . Atlas-SNP TDRD5 163589 hgsc.bcm.edu hg19 1 179632575 179632575 + Silent SNP A A G rs147178825 TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . TDRD5 NM_001199085 exon16 c.A2598G p.P866P TAAGCCAGAAGTA . 93.0 29.0 126.0 0.0 . 149 . A|1.000;G|0.000 Atlas-SNP FAM5C 339479 hgsc.bcm.edu hg19 1 190250879 190250879 + Missense_Mutation SNP C C T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . FAM5C NM_199051 exon3 c.G238A p.E80K CAAACTCCCTGAA . 184.0 69.0 224.0 0.0 . 343 . . Atlas-SNP CENPF 1063 hgsc.bcm.edu hg19 1 214816385 214816385 + Missense_Mutation SNP G G T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc CENPF,NS,carcinoma,0,2 CENPF NM_016343 exon12 c.G4704T p.E1568D AGAAGAGAAAATG . 125.0 33.0 138.0 0.0 . 321 . . Atlas-SNP OBSCN 84033 hgsc.bcm.edu hg19 1 228537683 228537683 + Missense_Mutation SNP G G T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . OBSCN NM_001271223 exon87 c.G21112T p.D7038Y GGTGTGGACTCTG . 43.0 15.0 51.0 0.0 . 2142 . . Atlas-SNP SMYD3 64754 hgsc.bcm.edu hg19 1 245912933 245912933 + Missense_Mutation SNP C C T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . SMYD3 NM_001167740 exon12 c.G1219A p.E407K TGTGTTCTCTGCC . 42.0 10.0 63.0 0.0 . 77 . . Atlas-SNP AHCTF1 25909 hgsc.bcm.edu hg19 1 247071004 247071004 + Missense_Mutation SNP T T C novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . AHCTF1 NM_015446 exon5 c.A640G p.M214V GTCTCATTACACT . 153.0 40.0 207.0 0.0 . 187 . . Atlas-SNP OR2L8 391190 hgsc.bcm.edu hg19 1 248112399 248112399 + Missense_Mutation SNP G G A novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . OR2L8 NM_001001963 exon1 c.G240A p.M80I TAAGATGGCATCT . 44.0 18.0 99.0 0.0 . 92 . . Atlas-SNP CCDC142 84865 hgsc.bcm.edu hg19 2 74709806 74709806 + Silent SNP C C T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . CCDC142 NM_032779 exon1 c.G159A p.G53G CGGCGTCCCTCCA . 59.0 21.0 90.0 0.0 . 40 . . Atlas-SNP MAP4K4 9448 hgsc.bcm.edu hg19 2 102477449 102477449 + Splice_Site SNP G G T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . MAP4K4 NM_145686 exon16 c.1773+1G>T . CCACAGGTAGCGA . 29.0 8.0 37.0 0.0 . 111 . . Atlas-SNP PRPF40A 55660 hgsc.bcm.edu hg19 2 153526802 153526802 + Nonsense_Mutation SNP C C A novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . PRPF40A NM_017892 exon15 c.G1573T p.E525X GGGCTTCAGACCA . 80.0 26.0 87.0 0.0 . 149 . . Atlas-SNP GRB14 2888 hgsc.bcm.edu hg19 2 165381556 165381556 + Silent SNP T T A novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . GRB14 NM_004490 exon5 c.A636T p.A212A TTCAGTTGCAAAA . 323.0 98.0 431.0 0.0 . 73 . . Atlas-SNP COL3A1 1281 hgsc.bcm.edu hg19 2 189859318 189859318 + Missense_Mutation SNP C C T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc COL3A1,NS,carcinoma,-1,1 COL3A1 NM_000090 exon19 c.C1345T p.R449C GGTGAACGCGTAA . 180.0 63.0 210.0 0.0 . 292 . . Atlas-SNP NAB1 4664 hgsc.bcm.edu hg19 2 191548503 191548503 + Missense_Mutation SNP T T C novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . NAB1 NM_005966 exon7 c.T1045C p.F349L ACACTCTTCCAGC . 44.0 14.0 62.0 0.0 . 31 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266101 41266101 + Missense_Mutation SNP C C G rs121913400 bycluster TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc CTNNB1,gallbladder,other,0,359 CTNNB1 NM_001098209 exon3 c.C98G p.S33C TGGACTCTGGAAT . 92.0 38.0 136.0 0.0 . 4904 . . Atlas-SNP LTF 4057 hgsc.bcm.edu hg19 3 46501175 46501175 + Missense_Mutation SNP A A G novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc LTF,rectum,carcinoma,0,1 LTF NM_002343 exon2 c.T178C p.S60P TGGGGGAGTCTCT . 73.0 4.0 89.0 2.0 . 98 . . Atlas-SNP ALS2CL 259173 hgsc.bcm.edu hg19 3 46722032 46722032 + Splice_Site SNP C C A novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . ALS2CL NM_001190707 exon15 c.1437-1G>T . TCACCTCTGGAAG . 13.0 4.0 20.0 0.0 . 78 . . Atlas-SNP CCDC66 285331 hgsc.bcm.edu hg19 3 56627035 56627035 + Missense_Mutation SNP A A C novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . CCDC66 NM_001141947 exon8 c.A974C p.K325T CTGTGAAACAAGA . 130.0 48.0 161.0 0.0 . 145 . . Atlas-SNP ETV5 2119 hgsc.bcm.edu hg19 3 185797732 185797732 + Missense_Mutation SNP G G A novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . ETV5 NM_004454 exon7 c.C524T p.A175V GCGGGGGCGGGGC . 43.0 15.0 53.0 0.0 . 106 . . Atlas-SNP SLC34A2 10568 hgsc.bcm.edu hg19 4 25676185 25676185 + Silent SNP C C G novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . SLC34A2 NM_006424 exon12 c.C1392G p.G464G CATCGGCACCACC . 116.0 47.0 161.0 0.0 . 93 . . Atlas-SNP GYPA 2993 hgsc.bcm.edu hg19 4 145035877 145035877 + Missense_Mutation SNP T T A novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . GYPA NM_002099 exon6 c.A401T p.D134V GGCACGTCTGTGT . 64.0 27.0 104.0 0.0 . 27 . . Atlas-SNP RXFP1 59350 hgsc.bcm.edu hg19 4 159568206 159568206 + Missense_Mutation SNP A A G novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . RXFP1 NM_001253727 exon16 c.A1690G p.I564V ATTTGGATTACTG . 71.0 33.0 79.0 0.0 . 98 . . Atlas-SNP ZNF608 57507 hgsc.bcm.edu hg19 5 123980027 123980027 + Missense_Mutation SNP A A T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . ZNF608 NM_020747 exon5 c.T4033A p.Y1345N GCAAGTACTGTAT . 106.0 24.0 108.0 0.0 . 117 . . Atlas-SNP ZNF608 57507 hgsc.bcm.edu hg19 5 123980028 123980028 + Missense_Mutation SNP C C A novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . ZNF608 NM_020747 exon5 c.G4032T p.Q1344H CAAGTACTGTATG . 108.0 24.0 108.0 0.0 . 117 . . Atlas-SNP PCDHGB3 56102 hgsc.bcm.edu hg19 5 140750610 140750610 + Missense_Mutation SNP G G A novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . PCDHGB3 NM_018924 exon1 c.G649A p.G217R GTGGATGGGGGCG . 94.0 21.0 92.0 0.0 . 168 . . Atlas-SNP GPLD1 2822 hgsc.bcm.edu hg19 6 24429303 24429303 + Missense_Mutation SNP C C T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . GPLD1 NM_001503 exon25 c.G2480A p.R827Q GAGAGTCGGGCTC . 59.0 11.0 65.0 0.0 . 91 . . Atlas-SNP HIST1H2AG 8969 hgsc.bcm.edu hg19 6 27101233 27101233 + Missense_Mutation SNP A A T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . HIST1H2AG NM_021064 exon1 c.A383T p.K128M AGGCGAAGGGCAA . 133.0 43.0 203.0 0.0 . 37 . . Atlas-SNP NRM 11270 hgsc.bcm.edu hg19 6 30656498 30656498 + Silent SNP C C A novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . NRM NM_001270707 exon4 c.G747T p.R249R CTGGGCCCGGAGG . 85.0 21.0 109.0 0.0 . 7 . . Atlas-SNP TNXB 7148 hgsc.bcm.edu hg19 6 32036842 32036842 + Silent SNP A A G novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . TNXB NM_019105 exon16 c.T5659C p.L1887L CTGTCAACTCCCC . 63.0 22.0 71.0 0.0 . 553 . . Atlas-SNP PXT1 222659 hgsc.bcm.edu hg19 6 36359627 36359627 + Missense_Mutation SNP C C T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . PXT1 NM_152990 exon5 c.G325A p.A109T CTAGTGCATCTCT . 80.0 17.0 84.0 0.0 . 6 . . Atlas-SNP CRISP1 167 hgsc.bcm.edu hg19 6 49814359 49814359 + Missense_Mutation SNP C C T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . CRISP1 NM_001205220 exon5 c.G309A p.M103I CATATGCATATTT . 73.0 27.0 72.0 0.0 . 45 . . Atlas-SNP VGLL2 245806 hgsc.bcm.edu hg19 6 117589350 117589350 + Silent SNP A A C novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . VGLL2 NM_182645 exon2 c.A87C p.L29L GAAACTAGCCTAT . 159.0 56.0 193.0 0.0 . 18 . . Atlas-SNP HSF2 3298 hgsc.bcm.edu hg19 6 122749064 122749064 + Missense_Mutation SNP T T C novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . HSF2 NM_004506 exon11 c.T1193C p.V398A GTTCTGTGCAGAT . 156.0 55.0 216.0 0.0 . 43 . . Atlas-SNP IGFBP1 3484 hgsc.bcm.edu hg19 7 45931536 45931536 + Silent SNP C C G novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc IGFBP1,NS,carcinoma,0,1 IGFBP1 NM_000596 exon3 c.C525G p.P175P GGAGCCCTGCCGA . 48.0 19.0 72.0 0.0 . 19 . . Atlas-SNP TRIM56 81844 hgsc.bcm.edu hg19 7 100731596 100731596 + Silent SNP C C T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . TRIM56 NM_030961 exon3 c.C1003T p.L335L AGGCAGCTGCAGG . 48.0 11.0 26.0 0.0 . 123 . . Atlas-SNP PDP1 54704 hgsc.bcm.edu hg19 8 94935709 94935709 + Silent SNP G G A novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . PDP1 NM_001161780 exon3 c.G1497A p.E499E ATTTGAGGATCAG . 122.0 72.0 71.0 0.0 . 97 . . Atlas-SNP TONSL 4796 hgsc.bcm.edu hg19 8 145666384 145666384 + Missense_Mutation SNP C C G novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . TONSL NM_013432 exon8 c.G976C p.D326H GAAAGTCTCCTGC . 110.0 49.0 74.0 0.0 . 128 . . Atlas-SNP IZUMO3 100129669 hgsc.bcm.edu hg19 9 24545239 24545239 + Missense_Mutation SNP A A T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . . NM_001271706 exon2 c.T272A p.F91Y TTATAAAATTCAT . 98.0 34.0 113.0 0.0 . . . . Atlas-SNP ACO1 48 hgsc.bcm.edu hg19 9 32431729 32431729 + Missense_Mutation SNP A A G novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . ACO1 NM_002197 exon15 c.A1739G p.K580R ATGCAAAGGGACA . 78.0 37.0 102.0 0.0 . 149 . . Atlas-SNP NOTCH1 4851 hgsc.bcm.edu hg19 9 139395113 139395113 + Missense_Mutation SNP T T A novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . NOTCH1 NM_017617 exon31 c.A5825T p.D1942V GCGGCATCAGAGC . 46.0 10.0 55.0 0.0 . 1980 . . Atlas-SNP MASTL 84930 hgsc.bcm.edu hg19 10 27454042 27454042 + Silent SNP A A G novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . MASTL NM_032844 exon5 c.A603G p.R201R ACCTAGACAAGAT . 124.0 34.0 173.0 0.0 . 81 . . Atlas-SNP NRG3 10718 hgsc.bcm.edu hg19 10 84745207 84745207 + Missense_Mutation SNP G G T rs150401464 byfrequency;alternate_allele TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . NRG3 NM_001010848 exon9 c.G1937T p.R646L CCAGACGGTCAGA . 67.0 26.0 105.0 0.0 . 301 . G|1.000;A|0.000 Atlas-SNP TBC1D12 23232 hgsc.bcm.edu hg19 10 96162647 96162647 + Missense_Mutation SNP G G A novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . TBC1D12 NM_015188 exon1 c.G277A p.G93S CCCGCTGGCCAGG . 30.0 11.0 34.0 0.0 . 51 . . Atlas-SNP CYP2C8 1558 hgsc.bcm.edu hg19 10 96826978 96826978 + Missense_Mutation SNP C C G novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . CYP2C8 NM_000770 exon3 c.G468C p.L156F TTTTCTCAACTCC . 106.0 25.0 117.0 0.0 . 73 . . Atlas-SNP ZFYVE27 118813 hgsc.bcm.edu hg19 10 99509255 99509255 + Silent SNP A A T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . ZFYVE27 NM_001002261 exon5 c.A576T p.T192T GGGCACAGTCTGC . 51.0 21.0 58.0 0.0 . 31 . . Atlas-SNP MKI67 4288 hgsc.bcm.edu hg19 10 129903317 129903317 + Missense_Mutation SNP C C A novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . MKI67 NM_002417 exon13 c.G6787T p.G2263W CTTTCCCTACTGA . 68.0 22.0 82.0 0.0 . 363 . . Atlas-SNP POU2AF1 5450 hgsc.bcm.edu hg19 11 111228301 111228301 + Missense_Mutation SNP C C T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . POU2AF1 NM_006235 exon4 c.G325A p.V109M GGGGCACATACTC . 130.0 45.0 178.0 0.0 . 23 . . Atlas-SNP AMICA1 120425 hgsc.bcm.edu hg19 11 118067460 118067460 + Missense_Mutation SNP T T C novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . AMICA1 NM_001098526 exon9 c.A1082G p.Y361C GTCATGTAGGTGG . 52.0 15.0 68.0 0.0 . 49 . . Atlas-SNP PANX3 116337 hgsc.bcm.edu hg19 11 124489377 124489377 + Missense_Mutation SNP G G A novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . PANX3 NM_052959 exon4 c.G725A p.C242Y TCAGCTGCTCCAT . 85.0 26.0 104.0 0.0 . 52 . . Atlas-SNP DENND5B 160518 hgsc.bcm.edu hg19 12 31586180 31586180 + Missense_Mutation SNP C C T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . DENND5B NM_144973 exon8 c.G2015A p.R672H ACCCAGCGACTGA . 49.0 13.0 77.0 0.0 . 114 . . Atlas-SNP KRT81 3887 hgsc.bcm.edu hg19 12 52681031 52681031 + Silent SNP G G A novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc KRT81,NS,carcinoma,0,1 KRT81 NM_002281 exon7 c.C1102T p.L368L CGGCCAGCTTGCA . 68.0 29.0 95.0 0.0 . 46 . . Atlas-SNP ZNF140 7699 hgsc.bcm.edu hg19 12 133682814 133682814 + Silent SNP T T G novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . ZNF140 NM_003440 exon5 c.T951G p.T317T CCTTACTCGACAT . 98.0 31.0 91.0 0.0 . 18 . . Atlas-SNP ZC3H13 23091 hgsc.bcm.edu hg19 13 46541986 46541986 + Missense_Mutation SNP C C A novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . ZC3H13 NM_015070 exon15 c.G3974T p.R1325L GCATCTCGGTCCC . 62.0 27.0 52.0 0.0 . 197 . . Atlas-SNP VIPAS39 63894 hgsc.bcm.edu hg19 14 77900204 77900204 + Missense_Mutation SNP T T C novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . . NM_001193314 exon16 c.A1160G p.D387G AGGGCATCTACAT . 174.0 51.0 198.0 0.0 . . . . Atlas-SNP VIPAS39 63894 hgsc.bcm.edu hg19 14 77900210 77900210 + Missense_Mutation SNP T T G novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . . NM_001193314 exon16 c.A1154C p.D385A TCTACATCATTCC . 172.0 52.0 202.0 0.0 . . . . Atlas-SNP PPP2R5C 5527 hgsc.bcm.edu hg19 14 102285330 102285330 + Missense_Mutation SNP G G A novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . PPP2R5C NM_001161725 exon3 c.G95A p.G32E TCTAGGGAACAAG . 68.0 16.0 77.0 0.0 . 74 . . Atlas-SNP CEP170B 283638 hgsc.bcm.edu hg19 14 105359964 105359964 + Silent SNP C C T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . . NM_001112726 exon15 c.C4143T p.D1381D TGAGGACGCCCTG . 125.0 11.0 118.0 0.0 . . . . Atlas-SNP SLC24A5 283652 hgsc.bcm.edu hg19 15 48431227 48431227 + Silent SNP C C T rs112771038 TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . SLC24A5 NM_205850 exon7 c.C933T p.S311S ATTATCCCTTCCT . 172.0 53.0 229.0 0.0 . 64 . T|1.000;|0.000 Atlas-SNP UNC13C 440279 hgsc.bcm.edu hg19 15 54542554 54542554 + Silent SNP C C T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . UNC13C NM_001080534 exon6 c.C3360T p.G1120G GTGGGGCATTGCA . 77.0 21.0 76.0 0.0 . 674 . . Atlas-SNP ZNF768 79724 hgsc.bcm.edu hg19 16 30536644 30536644 + Missense_Mutation SNP C C T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . ZNF768 NM_024671 exon2 c.G817A p.G273S TGGAGCCCCGCCC . 42.0 19.0 40.0 0.0 . 28 . . Atlas-SNP SPG7 6687 hgsc.bcm.edu hg19 16 89620237 89620237 + Missense_Mutation SNP G G T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . SPG7 NM_003119 exon15 c.G1972T p.A658S CGCATCGCCTACT . 68.0 4.0 102.0 0.0 . 75 . . Atlas-SNP ZZEF1 23140 hgsc.bcm.edu hg19 17 4016072 4016072 + Silent SNP C C T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . ZZEF1 NM_015113 exon5 c.G897A p.R299R CAGGTGCCTAAGC . 41.0 13.0 60.0 0.0 . 195 . . Atlas-SNP GID4 79018 hgsc.bcm.edu hg19 17 17962265 17962265 + Silent SNP C C T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc C17orf39,NS,carcinoma,0,1 . NM_024052 exon4 c.C690T p.Y230Y AGACTACGTCTTC . 82.0 4.0 87.0 0.0 . . . . Atlas-SNP AANAT 15 hgsc.bcm.edu hg19 17 74465835 74465835 + Missense_Mutation SNP G G A novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . AANAT NM_001166579 exon7 c.G542A p.G181D GCAGGGGCCCCAT . 46.0 13.0 63.0 0.0 . 7 . . Atlas-SNP TMC6 11322 hgsc.bcm.edu hg19 17 76120700 76120700 + Missense_Mutation SNP G G C novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . TMC6 NM_001127198 exon8 c.C796G p.L266V CCACCAGCAGCAG . 74.0 4.0 73.0 0.0 . 42 . . Atlas-SNP PRODH2 58510 hgsc.bcm.edu hg19 19 36291013 36291013 + Missense_Mutation SNP C C T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . PRODH2 NM_021232 exon11 c.G1538A p.R513H TCCCTGCGGGCAC . 50.0 4.0 72.0 0.0 . 68 . . Atlas-SNP SIGLEC9 27180 hgsc.bcm.edu hg19 19 51630327 51630327 + Silent SNP A A G novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . SIGLEC9 NM_001198558 exon4 c.A789G p.P263P ACTCCCAGAGGGC . 46.0 16.0 64.0 0.0 . 85 . . Atlas-SNP ZNF808 388558 hgsc.bcm.edu hg19 19 53058362 53058362 + Silent SNP T T A novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . ZNF808 NM_001039886 exon5 c.T2193A p.G731G TAGTGGTGAGAAA . 95.0 27.0 134.0 0.0 . 81 . . Atlas-SNP SLC2A10 81031 hgsc.bcm.edu hg19 20 45354676 45354676 + Missense_Mutation SNP A A G novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . SLC2A10 NM_030777 exon2 c.A1001G p.N334S TGCCCAATGCCAC . 35.0 11.0 34.0 0.0 . 75 . . Atlas-SNP NCOA3 8202 hgsc.bcm.edu hg19 20 46265302 46265302 + Missense_Mutation SNP G G T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . NCOA3 NM_001174088 exon12 c.G2202T p.Q734H CAAGCAGGAGCAG . 130.0 39.0 140.0 0.0 . 156 . . Atlas-SNP NCOA3 8202 hgsc.bcm.edu hg19 20 46265303 46265303 + Nonsense_Mutation SNP G G T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . NCOA3 NM_001174088 exon12 c.G2203T p.E735X AAGCAGGAGCAGC . 129.0 38.0 143.0 0.0 . 156 . . Atlas-SNP SEPT5 5413 hgsc.bcm.edu hg19 22 19707954 19707954 + Silent SNP C C T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . SEPT5 NM_001009939 exon5 c.C501T p.Y167Y CCTATACTTCATC . 79.0 24.0 99.0 0.0 . 32 . . Atlas-SNP ZNF280B 140883 hgsc.bcm.edu hg19 22 22842882 22842882 + Missense_Mutation SNP G G A novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . ZNF280B NM_080764 exon4 c.C842T p.P281L ACAATGGGATTTT . 71.0 35.0 96.0 0.0 . 67 . . Atlas-SNP MPPED1 758 hgsc.bcm.edu hg19 22 43870642 43870642 + Missense_Mutation SNP G G C novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . MPPED1 NM_001044370 exon4 c.G433C p.V145L AAGATCGTGATCG . 50.0 23.0 54.0 0.0 . 59 . . Atlas-SNP WNK3 65267 hgsc.bcm.edu hg19 X 54321102 54321102 + Missense_Mutation SNP A A G novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . WNK3 NM_001002838 exon8 c.T1577C p.L526S AGGGGTAAAGTTG . 43.0 27.0 42.0 0.0 . 218 . . Atlas-SNP AVPR2 554 hgsc.bcm.edu hg19 X 153171432 153171432 + Missense_Mutation SNP C C T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . AVPR2 NM_001146151 exon2 c.C472T p.R158W TGGAACCGGCCGG . 16.0 12.0 18.0 0.0 . 43 . . Atlas-SNP PLXNA3 55558 hgsc.bcm.edu hg19 X 153691734 153691734 + Missense_Mutation SNP G G T novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . PLXNA3 NM_017514 exon5 c.G1318T p.V440L GCTCAGGTGCGGG . 33.0 21.0 36.0 0.0 . 156 . . Atlas-SNP ND5 0 hgsc.bcm.edu hg19 MT 13707 13707 + Silent SNP G G A novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . . ENST00000361567 exon1 c.G1371A p.L457L ACGCCTGGCAGCC . 38.0 7.0 22.0 0.0 . . . . Atlas-SNP ARID1A 8289 hgsc.bcm.edu hg19 1 27106484 27106484 + Frame_Shift_Del DEL A A - novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc ARID1A,NS,carcinoma,0,1 ARID1A NM_006015 exon20 c.6094delG p.E2032fs . . 103.0 69.0 130.0 0.0 . 842 . . Atlas-INDEL YLPM1 56252 hgsc.bcm.edu hg19 14 75248349 75248357 + In_Frame_Del DEL CCTCCAGTG CCTCCAGTG - novel TCGA-DD-AAVX-01A-11D-A40R-10 TCGA-DD-AAVX-10A-01D-A40U-10 CCTCCAGTG CCTCCAGTG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq e8170e1d-9a50-4822-84ec-8750c4a174cb 65b44904-6523-4508-b745-d3af723355fc . YLPM1 NM_019589 exon4 c.1602_1610del p.534_537del . . 59.0 16.0 63.0 0.0 . 298 . . Atlas-INDEL