Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PRKCZ	5590	hgsc.bcm.edu	hg19	1	2082320	2082320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	PRKCZ_ENST00000378567,colon,carcinoma,+1,1	PRKCZ	NM_002744	exon9	c.G779A	p.R260H	TCGGGCGCGGGAG	.	63.0	42.0	113.0	0.0	.	84	.	.	Atlas-SNP
CELA2A	63036	hgsc.bcm.edu	hg19	1	15793937	15793937	+	Silent	SNP	C	C	T	rs201638508	bycluster	TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	CELA2A	NM_033440	exon7	c.C696T	p.H232H	GGTGCACGGCATC	.	65.0	40.0	79.0	0.0	.	32	.	C|0.999;T|0.001	Atlas-SNP
DENND2D	79961	hgsc.bcm.edu	hg19	1	111730233	111730233	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	DENND2D	NM_024901	exon12	c.G1410A	p.V470V	TTATTTCACAGTT	.	151.0	72.0	81.0	0.0	.	50	.	.	Atlas-SNP
ADORA3	140	hgsc.bcm.edu	hg19	1	112042811	112042811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	ADORA3,colon,carcinoma,0,1	ADORA3	NM_000677	exon2	c.G718A	p.A240T	ACAGAGCAAACAA	.	238.0	105.0	197.0	0.0	.	104	.	.	Atlas-SNP
SWT1	54823	hgsc.bcm.edu	hg19	1	185259914	185259914	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	SWT1	NM_017673	exon19	c.C2682T	p.D894D	TGAAGACATGCTC	.	183.0	32.0	97.0	0.0	.	88	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	185892673	185892673	+	Silent	SNP	T	T	A	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	HMCN1	NM_031935	exon8	c.T1173A	p.I391I	GAATATTTCTGAC	.	166.0	28.0	102.0	0.0	.	797	.	.	Atlas-SNP
DDX59	83479	hgsc.bcm.edu	hg19	1	200635154	200635154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	DDX59	NM_001031725	exon2	c.C715A	p.L239M	TTCCCAGAAGTCC	.	389.0	90.0	243.0	0.0	.	117	.	.	Atlas-SNP
FMN2	56776	hgsc.bcm.edu	hg19	1	240371876	240371876	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	FMN2	NM_020066	exon5	c.C3764G	p.P1255R	CTTTACCAACCCC	.	287.0	49.0	137.0	0.0	.	451	.	.	Atlas-SNP
ZNF638	27332	hgsc.bcm.edu	hg19	2	71577248	71577248	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	ZNF638	NM_014497	exon2	c.G1164A	p.V388V	TATTGTGAAAGCA	.	55.0	21.0	68.0	0.0	.	179	.	.	Atlas-SNP
VWA3B	200403	hgsc.bcm.edu	hg19	2	98887262	98887262	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	VWA3B	NM_144992	exon22	c.C2961A	p.I987I	TGAAATCCTAGCT	.	407.0	151.0	378.0	1.0	.	138	.	.	Atlas-SNP
RAB3GAP1	22930	hgsc.bcm.edu	hg19	2	135809890	135809890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	RAB3GAP1	NM_001172435	exon1	c.A13G	p.S5G	GCCGACAGTGAGG	.	86.0	30.0	104.0	0.0	.	87	.	.	Atlas-SNP
FN1	2335	hgsc.bcm.edu	hg19	2	216241231	216241231	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	FN1_ENST00000354785,NS,carcinoma,0,2	FN1	NM_212482	exon36	c.C5877T	p.Y1959Y	GATGGTGTAGCTT	.	92.0	42.0	86.0	0.0	.	521	.	.	Atlas-SNP
ABCB6	10058	hgsc.bcm.edu	hg19	2	220080755	220080755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	ABCB6	NM_005689	exon5	c.C1118T	p.A373V	CGATCCGCGATCC	.	96.0	24.0	103.0	0.0	.	76	.	.	Atlas-SNP
ANKMY1	51281	hgsc.bcm.edu	hg19	2	241494429	241494429	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	ANKMY1	NM_017844	exon3	c.G190T	p.G64C	GCGGGCCCTCAGC	.	100.0	5.0	109.0	0.0	.	112	.	.	Atlas-SNP
SCN10A	6336	hgsc.bcm.edu	hg19	3	38739634	38739634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	SCN10A	NM_006514	exon27	c.G5077A	p.G1693R	GGCTCCCACAGTC	.	140.0	61.0	119.0	0.0	.	359	.	.	Atlas-SNP
ITGB5	3693	hgsc.bcm.edu	hg19	3	124560396	124560396	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	ITGB5	NM_002213	exon5	c.A614C	p.Y205S	AACTTGTAACTAG	.	66.0	28.0	73.0	0.0	.	66	.	.	Atlas-SNP
FOXL2	668	hgsc.bcm.edu	hg19	3	138664931	138664931	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	FOXL2	NM_023067	exon1	c.C634G	p.P212A	GCATGGGTGAGGG	.	435.0	25.0	508.0	0.0	.	408	.	.	Atlas-SNP
ELF2	1998	hgsc.bcm.edu	hg19	4	139994674	139994674	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	ELF2	NM_201999	exon4	c.C286G	p.H96D	CTTCAATTGTCTT	.	219.0	77.0	236.0	0.0	.	43	.	.	Atlas-SNP
LRRC70	100130733	hgsc.bcm.edu	hg19	5	61877102	61877102	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	LRRC70	NM_181506	exon2	c.C1837T	p.Q613X	GAGGCACAGGTCA	.	277.0	90.0	255.0	0.0	.	19	.	.	Atlas-SNP
ERBB2IP	55914	hgsc.bcm.edu	hg19	5	65309395	65309395	+	Silent	SNP	T	T	C	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	ERBB2IP	NM_001253701	exon6	c.T405C	p.S135S	ATTTTCTCAGCTG	.	108.0	11.0	102.0	0.0	.	120	.	.	Atlas-SNP
SLC12A2	6558	hgsc.bcm.edu	hg19	5	127483354	127483354	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	SLC12A2	NM_001046	exon11	c.C1814G	p.A605G	TTTCTGCAGGTAT	.	103.0	32.0	161.0	0.0	.	119	.	.	Atlas-SNP
PCDHB5	26167	hgsc.bcm.edu	hg19	5	140516627	140516627	+	Silent	SNP	C	C	T	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	PCDHB5	NM_015669	exon1	c.C1611T	p.S537S	CGGCTCCCCGGCG	.	182.0	77.0	126.0	0.0	.	184	.	.	Atlas-SNP
BAI3	577	hgsc.bcm.edu	hg19	6	70037730	70037730	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	BAI3,colon,carcinoma,0,3	BAI3	NM_001704	exon22	c.T2984G	p.V995G	TAGTAGTGGCCAC	.	117.0	55.0	101.0	0.0	.	451	.	.	Atlas-SNP
KIAA1324L	222223	hgsc.bcm.edu	hg19	7	86554856	86554856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	KIAA1324L	NM_001142749	exon10	c.G1387A	p.D463N	TTCCATCGCACTT	.	107.0	38.0	115.0	0.0	.	225	.	.	Atlas-SNP
CHRNB3	1142	hgsc.bcm.edu	hg19	8	42586871	42586871	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	CHRNB3	NM_000749	exon5	c.G421C	p.V141L	GGAACTGTTGTCT	.	286.0	190.0	165.0	1.0	.	74	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113293433	113293433	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	CSMD3	NM_198123	exon59	c.A9478G	p.T3160A	ACCATGTTCCATT	.	171.0	22.0	155.0	0.0	.	2325	.	.	Atlas-SNP
SNAPC4	6621	hgsc.bcm.edu	hg19	9	139272186	139272186	+	Missense_Mutation	SNP	G	G	A	rs372472067		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	SNAPC4	NM_003086	exon21	c.C4093T	p.R1365W	GCGCCCGCAACAG	.	133.0	47.0	112.0	0.0	.	82	.	.	Atlas-SNP
GPR158	57512	hgsc.bcm.edu	hg19	10	25464914	25464914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	GPR158	NM_020752	exon1	c.C565A	p.Q189K	GCCCCACAGGTCT	.	86.0	33.0	63.0	0.0	.	255	.	.	Atlas-SNP
ZNF248	57209	hgsc.bcm.edu	hg19	10	38121102	38121102	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	ZNF248	NM_001267597	exon6	c.A1181G	p.N394S	GTGAGGTTTGACT	.	99.0	37.0	114.0	0.0	.	61	.	.	Atlas-SNP
LOXL4	84171	hgsc.bcm.edu	hg19	10	100017527	100017527	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	LOXL4	NM_032211	exon8	c.C1140T	p.C380C	TCCCCTGCAGCGC	.	85.0	36.0	69.0	0.0	.	60	.	.	Atlas-SNP
OR8H1	219469	hgsc.bcm.edu	hg19	11	56057636	56057636	+	Silent	SNP	A	A	G	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	OR8H1	NM_001005199	exon1	c.T903C	p.I301I	GACTCTAATGAGA	.	170.0	65.0	192.0	0.0	.	89	.	.	Atlas-SNP
C2CD3	26005	hgsc.bcm.edu	hg19	11	73849880	73849880	+	Missense_Mutation	SNP	C	C	A	rs139995248	bycluster;by1000genomes;alternate_allele	TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	C2CD3_ENST00000334126,NS,carcinoma,0,2	C2CD3	NM_015531	exon5	c.G840T	p.Q280H	GGACATCTGCTTC	.	104.0	37.0	89.0	0.0	.	288	.	C|1.000;T|0.000	Atlas-SNP
TROAP	10024	hgsc.bcm.edu	hg19	12	49719613	49719613	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	TROAP	NM_005480	exon5	c.G579A	p.L193L	TAGGCTGGAGGGA	.	54.0	21.0	59.0	0.0	.	80	.	.	Atlas-SNP
CERS5	91012	hgsc.bcm.edu	hg19	12	50537811	50537811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	.	NM_147190	exon2	c.T227C	p.I76T	ATGCCAATACAGA	.	72.0	4.0	67.0	0.0	.	.	.	.	Atlas-SNP
BEST3	144453	hgsc.bcm.edu	hg19	12	70088201	70088201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	BEST3	NM_032735	exon3	c.T196C	p.S66P	AAATTGATAATTT	.	138.0	46.0	120.0	0.0	.	129	.	.	Atlas-SNP
TMEM132C	92293	hgsc.bcm.edu	hg19	12	129190519	129190519	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	TMEM132C	NM_001136103	exon9	c.G3006A	p.P1002P	CGGACCGGGGGCC	.	117.0	46.0	120.0	0.0	.	142	.	.	Atlas-SNP
ASB2	51676	hgsc.bcm.edu	hg19	14	94420805	94420805	+	Silent	SNP	G	G	A	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	ASB2	NM_001202429	exon4	c.C336T	p.A112A	CTTGATGGCCTTT	.	71.0	29.0	55.0	0.0	.	71	.	.	Atlas-SNP
EIF5	1983	hgsc.bcm.edu	hg19	14	103806063	103806063	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	EIF5	NM_001969	exon10	c.A994T	p.K332X	ATCTCCAAGATTC	.	101.0	41.0	96.0	0.0	.	40	.	.	Atlas-SNP
PDCD7	10081	hgsc.bcm.edu	hg19	15	65412278	65412278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	PDCD7	NM_005707	exon3	c.G1024A	p.A342T	CTGAGGCTGGAGG	.	97.0	41.0	132.0	0.0	.	22	.	.	Atlas-SNP
BRCA1	672	hgsc.bcm.edu	hg19	17	41245576	41245576	+	Missense_Mutation	SNP	T	T	C	rs55932871		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	BRCA1	NM_007300	exon10	c.A1972G	p.M658V	CTGGCATTTGGTT	.	87.0	30.0	105.0	0.0	.	304	.	.	Atlas-SNP
LONP1	9361	hgsc.bcm.edu	hg19	19	5719971	5719971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	LONP1	NM_004793	exon1	c.G173A	p.G58D	GCCGGGCCTCGGC	.	183.0	9.0	163.0	0.0	.	66	.	.	Atlas-SNP
ZNF581	51545	hgsc.bcm.edu	hg19	19	56156193	56156193	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	ZNF581	NM_016535	exon2	c.T256C	p.C86R	AAAAAGTGCTACA	.	116.0	42.0	135.0	0.0	.	13	.	.	Atlas-SNP
BRWD1	54014	hgsc.bcm.edu	hg19	21	40558988	40558988	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	BRWD1	NM_018963	exon42	c.A6927C	p.L2309F	CCCCCTTAAAAAA	.	214.0	86.0	238.0	0.0	.	325	.	.	Atlas-SNP
FAM47C	442444	hgsc.bcm.edu	hg19	X	37027755	37027755	+	Silent	SNP	C	C	G	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	FAM47C	NM_001013736	exon1	c.C1272G	p.S424S	AGTGTCCCATCTC	.	54.0	41.0	66.0	0.0	.	267	.	.	Atlas-SNP
IGBP1	3476	hgsc.bcm.edu	hg19	X	69353836	69353836	+	Silent	SNP	C	C	A	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	IGBP1	NM_001551	exon2	c.C39A	p.P13P	GCTCCCCGAGCTG	.	71.0	51.0	80.0	0.0	.	33	.	.	Atlas-SNP
ARR3	407	hgsc.bcm.edu	hg19	X	69498423	69498423	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	ARR3	NM_004312	exon12	c.C837A	p.C279X	CAGCTGCCAGAAA	.	210.0	159.0	216.0	1.0	.	41	.	.	Atlas-SNP
SPRY3	10251	hgsc.bcm.edu	hg19	X	155004171	155004171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	SPRY3	NM_005840	exon2	c.G638A	p.C213Y	GCTCTTGTGGGCC	.	111.0	13.0	135.0	0.0	.	52	.	.	Atlas-SNP
UTY	7404	hgsc.bcm.edu	hg19	Y	15447912	15447912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	UTY	NM_001258249	exon18	c.G2365A	p.D789N	TGACATCAGCACA	.	91.0	70.0	80.0	0.0	.	45	.	.	Atlas-SNP
AXIN1	8312	hgsc.bcm.edu	hg19	16	347839	347843	+	Frame_Shift_Del	DEL	CGGGT	CGGGT	-	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	CGGGT	CGGGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	AXIN1	NM_003502	exon6	c.1664_1668del	p.555_556del	.	.	26.0	14.0	55.0	0.0	.	290	.	.	Atlas-INDEL
KIF14	9928	hgsc.bcm.edu	hg19	1	200522763	200522764	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	KIF14	NM_014875	exon30	c.4700_4701del	p.1567_1567del	.	.	318.0	195.0	213.0	0.0	.	156	.	.	Atlas-INDEL
NFIA	4774	hgsc.bcm.edu	hg19	1	61743211	61743212	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	NFIA	NM_001145512	exon4	c.714_715insC	p.S238fs	.	.	143.0	85.0	218.0	0.0	.	76	.	.	Atlas-INDEL
GXYLT1	283464	hgsc.bcm.edu	hg19	12	42503406	42503407	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	GXYLT1	NM_173601	exon4	c.574_575insA	p.L192fs	.	.	315.0	101.0	357.0	0.0	.	47	.	.	Atlas-INDEL
OTOGL	283310	hgsc.bcm.edu	hg19	12	80732976	80732977	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DD-AAVZ-01A-11D-A40R-10	TCGA-DD-AAVZ-10A-01D-A40U-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	468bffe1-0c0a-44f6-bc8d-3f1961116b91	77a16e4e-a1bc-4dc1-ae4a-88342f6c99c4	.	OTOGL	NM_173591	exon42	c.4955_4956insC	p.L1652fs	.	.	109.0	47.0	115.0	0.0	.	235	.	.	Atlas-INDEL