Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm KIAA0040 9674 hgsc.bcm.edu hg19 1 175129922 175129922 + Missense_Mutation SNP A A C novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . KIAA0040 NM_001162895 exon3 c.T228G p.D76E TTCTTCATCCTTC . 75.0 4.0 71.0 0.0 . 2 . . Atlas-SNP KIAA0040 9674 hgsc.bcm.edu hg19 1 175129924 175129924 + Missense_Mutation SNP C C T novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . KIAA0040 NM_001162895 exon3 c.G226A p.D76N CTTCATCCTTCTT . 76.0 6.0 71.0 0.0 . 2 . . Atlas-SNP SP110 3431 hgsc.bcm.edu hg19 2 231067440 231067440 + Silent SNP T T G novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . SP110 NM_001185015 exon10 c.A921C p.T307T TGAGGCTGTCCCT . 157.0 20.0 142.0 0.0 . 105 . . Atlas-SNP HTRA3 94031 hgsc.bcm.edu hg19 4 8304197 8304197 + Silent SNP G G A novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . HTRA3 NM_053044 exon7 c.G1059A p.K353K CTGGAAGAAGCGC . 76.0 28.0 46.0 0.0 . 39 . . Atlas-SNP TBC1D9 23158 hgsc.bcm.edu hg19 4 141543809 141543809 + Missense_Mutation SNP G G A rs199802386 TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 TBC1D9_ENST00000442267,NS,carcinoma,0,2 TBC1D9 NM_015130 exon21 c.C3341T p.P1114L CTGGCCGGCAGGG . 49.0 21.0 34.0 0.0 . 198 . G|0.998;A|0.002 Atlas-SNP FNIP2 57600 hgsc.bcm.edu hg19 4 159790466 159790466 + Missense_Mutation SNP C C T novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . FNIP2 NM_020840 exon13 c.C2678T p.S893L AAAGCTCAGATAG . 51.0 22.0 35.0 0.0 . 90 . . Atlas-SNP ZNF366 167465 hgsc.bcm.edu hg19 5 71757293 71757293 + Missense_Mutation SNP C C T novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . ZNF366 NM_152625 exon2 c.G31A p.E11K CATCCTCGTCTTT . 75.0 27.0 58.0 0.0 . 108 . . Atlas-SNP PCDHB16 57717 hgsc.bcm.edu hg19 5 140563725 140563725 + Missense_Mutation SNP G G A novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . PCDHB16 NM_020957 exon1 c.G1591A p.V531M TTCCGCGTGAGCG . 35.0 5.0 27.0 0.0 . 159 . . Atlas-SNP RNF14 9604 hgsc.bcm.edu hg19 5 141358344 141358344 + Silent SNP A A G novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . RNF14 NM_001201365 exon5 c.A783G p.Q261Q GGTTCAATGCCTC . 49.0 8.0 33.0 0.0 . 30 . . Atlas-SNP GRIA1 2890 hgsc.bcm.edu hg19 5 153149816 153149816 + Missense_Mutation SNP T T C novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . GRIA1 NM_001258021 exon13 c.T2141C p.M714T AGGGGATGATTCG . 104.0 39.0 68.0 0.0 . 321 . . Atlas-SNP CUL9 23113 hgsc.bcm.edu hg19 6 43172740 43172740 + Missense_Mutation SNP C C G novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . CUL9 NM_015089 exon23 c.C4519G p.H1507D TATGAGCACTTGC . 51.0 19.0 36.0 0.0 . 248 . . Atlas-SNP RADIL 55698 hgsc.bcm.edu hg19 7 4917455 4917455 + Missense_Mutation SNP G G T novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . RADIL NM_018059 exon2 c.C316A p.Q106K CGGCCTGCCTGGG . 37.0 9.0 23.0 0.0 . 110 . . Atlas-SNP KCNS2 3788 hgsc.bcm.edu hg19 8 99440423 99440423 + Missense_Mutation SNP C C A novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . KCNS2 NM_020697 exon2 c.C216A p.D72E CTTCGACCGCAAC . 48.0 15.0 38.0 0.0 . 93 . . Atlas-SNP APBA1 320 hgsc.bcm.edu hg19 9 72071267 72071267 + Missense_Mutation SNP G G A novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . APBA1 NM_001163 exon8 c.C1684T p.R562W GCATCCGCCGGCG . 63.0 21.0 47.0 0.0 . 96 . . Atlas-SNP TSC1 7248 hgsc.bcm.edu hg19 9 135797282 135797282 + Missense_Mutation SNP G G A novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . TSC1 NM_000368 exon7 c.C587T p.P196L TTGCAAGGGTACA . 46.0 30.0 60.0 0.0 . 167 . . Atlas-SNP OR51V1 283111 hgsc.bcm.edu hg19 11 5221116 5221116 + Missense_Mutation SNP C C T novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . OR51V1 NM_001004760 exon1 c.G815A p.R272H CCAAAACGGTGCA . 76.0 31.0 34.0 0.0 . 77 . . Atlas-SNP DRAP1 10589 hgsc.bcm.edu hg19 11 65687843 65687843 + Missense_Mutation SNP T T G novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . DRAP1 NM_006442 exon4 c.T239G p.F80C AGCAGTTTGACTT . 42.0 9.0 35.0 0.0 . 18 . . Atlas-SNP ERBB3 2065 hgsc.bcm.edu hg19 12 56495713 56495713 + Missense_Mutation SNP G G T novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . ERBB3 NM_001982 exon28 c.G3903T p.Q1301H ACATCAGGCCCCC . 55.0 25.0 39.0 0.0 . 350 . . Atlas-SNP SRGAP1 57522 hgsc.bcm.edu hg19 12 64437335 64437335 + Missense_Mutation SNP G G A novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . SRGAP1 NM_020762 exon6 c.G781A p.D261N ATTCATGATCTTT . 223.0 44.0 106.0 0.0 . 146 . . Atlas-SNP SUPT20H 55578 hgsc.bcm.edu hg19 13 37583904 37583904 + Missense_Mutation SNP C C T novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . . NM_001014286 exon26 c.G2245A p.A749T GTGCTGCTGCTGC . 233.0 10.0 201.0 0.0 . . . . Atlas-SNP NIN 51199 hgsc.bcm.edu hg19 14 51196346 51196346 + Missense_Mutation SNP C C A novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . NIN NM_020921 exon29 c.G5973T p.R1991S CTGCTCCCTGGGC . 105.0 56.0 115.0 0.0 . 475 . . Atlas-SNP PRIMA1 145270 hgsc.bcm.edu hg19 14 94245606 94245606 + Nonsense_Mutation SNP G G A novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . PRIMA1 NM_178013 exon3 c.C145T p.R49X CGTGTCGGCAGCT . 28.0 16.0 22.0 0.0 . 21 . . Atlas-SNP JAG2 3714 hgsc.bcm.edu hg19 14 105612177 105612177 + Missense_Mutation SNP T T C novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . JAG2 NM_002226 exon23 c.A2843G p.E948G CCGCACTCCCCCC . 119.0 5.0 115.0 0.0 . 69 . . Atlas-SNP AKAP13 11214 hgsc.bcm.edu hg19 15 86124170 86124170 + Silent SNP A A T novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . AKAP13 NM_007200 exon7 c.A2871T p.G957G TCCTGGACAAGAT . 56.0 17.0 59.0 0.0 . 394 . . Atlas-SNP AKAP13 11214 hgsc.bcm.edu hg19 15 86124171 86124171 + Nonsense_Mutation SNP C C T novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . AKAP13 NM_007200 exon7 c.C2872T p.Q958X CCTGGACAAGATA . 56.0 16.0 61.0 0.0 . 394 . . Atlas-SNP FAM92B 339145 hgsc.bcm.edu hg19 16 85133752 85133752 + Missense_Mutation SNP G G A novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . FAM92B NM_198491 exon7 c.C746T p.A249V TGGCTGGCGAGAG . 37.0 11.0 28.0 0.0 . 29 . . Atlas-SNP P2RX1 5023 hgsc.bcm.edu hg19 17 3806509 3806509 + Missense_Mutation SNP G G T novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . P2RX1 NM_002558 exon7 c.C734A p.T245N GCCAGGGTGCTGA . 25.0 12.0 36.0 0.0 . 38 . . Atlas-SNP CTIF 9811 hgsc.bcm.edu hg19 18 46163025 46163025 + Missense_Mutation SNP C C G rs141933283 alternate_allele TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . CTIF NM_014772 exon3 c.C221G p.S74C GCTGTTCCTTCTC . 85.0 35.0 88.0 0.0 . 102 . C|1.000;T|0.000 Atlas-SNP CTIF 9811 hgsc.bcm.edu hg19 18 46163026 46163026 + Silent SNP C C A novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . CTIF NM_014772 exon3 c.C222A p.S74S CTGTTCCTTCTCC . 85.0 35.0 86.0 0.0 . 102 . . Atlas-SNP MCM8 84515 hgsc.bcm.edu hg19 20 5935894 5935894 + Missense_Mutation SNP T T A novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . MCM8 NM_032485 exon5 c.T483A p.H161Q AATACATCAGGTA . 50.0 39.0 77.0 0.0 . 125 . . Atlas-SNP ND5 0 hgsc.bcm.edu hg19 MT 13543 13543 + Missense_Mutation SNP T T C novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . . ENST00000361567 exon1 c.T1207C p.Y403H ATATCATACACAA . 15.0 15.0 17.0 0.0 . . . . Atlas-SNP BAP1 8314 hgsc.bcm.edu hg19 3 52436639 52436640 + Frame_Shift_Ins INS - - A novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 .,1 BAP1 NM_004656 exon16 c.2035_2036insT p.I679fs . . 67.0 35.0 84.0 0.0 . 371 . . Atlas-Indel,Pindel CREG2 200407 hgsc.bcm.edu hg19 2 101971822 101971823 + Frame_Shift_Ins INS - - T novel TCGA-ED-A7PX-01A-51D-A34Z-10 TCGA-ED-A7PX-10A-01D-A34Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 282d9c17-9d34-43d9-952e-bf14edf7bc65 4fd69f63-3ae5-4678-8647-a7e5eabd7486 . CREG2 NM_153836 exon3 c.618_619insA p.N206fs . . 186.0 64.0 117.0 0.0 . 21 . . Atlas-Indel,Pindel