Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
TNN	63923	hgsc.bcm.edu	hg19	1	175048581	175048581	+	Silent	SNP	G	G	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	TNN	NM_022093	exon3	c.G522A	p.A174A	CGGGGCGTGCAGC	.	44.0	18.0	38.0	0.0	.	297	.	.	Atlas-SNP
SPTBN1	6711	hgsc.bcm.edu	hg19	2	54857137	54857137	+	Silent	SNP	C	C	T	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	SPTBN1	NM_003128	exon15	c.C2778T	p.I926I	GGAAATCAAAGCC	.	25.0	15.0	25.0	0.0	.	378	.	.	Atlas-SNP
STXBP5L	9515	hgsc.bcm.edu	hg19	3	120941851	120941851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	STXBP5L	NM_014980	exon11	c.G958A	p.E320K	TGTAGCGAACCAT	.	131.0	53.0	141.0	0.0	.	159	.	.	Atlas-SNP
ZBBX	79740	hgsc.bcm.edu	hg19	3	166960379	166960379	+	Silent	SNP	G	G	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	ZBBX	NM_001199201	exon21	c.C2307T	p.S769S	TTGGCTGCTGAAA	.	76.0	32.0	86.0	0.0	.	299	.	.	Atlas-SNP
PCDH12	51294	hgsc.bcm.edu	hg19	5	141336991	141336991	+	Silent	SNP	C	C	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	PCDH12	NM_016580	exon1	c.G426T	p.L142L	GATTTCCAGCTCC	.	86.0	46.0	128.0	0.0	.	133	.	.	Atlas-SNP
ZNF311	282890	hgsc.bcm.edu	hg19	6	28963999	28963999	+	Silent	SNP	T	T	G	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	ZNF311	NM_001010877	exon7	c.A780C	p.S260S	TAGATCTGAGTGC	.	158.0	48.0	129.0	0.0	.	59	.	.	Atlas-SNP
FOXP2	93986	hgsc.bcm.edu	hg19	7	114269944	114269944	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	FOXP2	NM_001172767	exon5	c.C556A	p.Q186K	CAGCAGCAACAAC	.	23.0	5.0	36.0	0.0	.	133	.	.	Atlas-SNP
PTPRN2	5799	hgsc.bcm.edu	hg19	7	157931034	157931034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	PTPRN2	NM_130843	exon7	c.G1084A	p.E362K	CCTGTTCTCCAGA	.	59.0	25.0	67.0	0.0	.	243	.	.	Atlas-SNP
PAPPA	5069	hgsc.bcm.edu	hg19	9	119109470	119109470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	PAPPA	NM_002581	exon15	c.C3946T	p.H1316Y	TGCCGTCACCCTG	.	130.0	53.0	113.0	0.0	.	243	.	.	Atlas-SNP
MORN5	254956	hgsc.bcm.edu	hg19	9	124936889	124936889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	MORN5,NS,carcinoma,0,1	MORN5	NM_198469	exon4	c.G422A	p.R141H	GGAACCGCTTTCT	.	70.0	15.0	76.0	0.0	.	19	.	.	Atlas-SNP
INCENP	3619	hgsc.bcm.edu	hg19	11	61906404	61906404	+	Silent	SNP	G	G	T	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	INCENP_ENST00000394818,colon,carcinoma,0,2	INCENP	NM_001040694	exon7	c.G1218T	p.T406T	TGACACGGAGATT	.	45.0	3.0	44.0	0.0	.	122	.	.	Atlas-SNP
SART1	9092	hgsc.bcm.edu	hg19	11	65743929	65743929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	SART1	NM_005146	exon13	c.G1636A	p.E546K	GATCCCGAGCGGA	.	23.0	13.0	35.0	0.0	.	41	.	.	Atlas-SNP
ADIPOR2	79602	hgsc.bcm.edu	hg19	12	1893123	1893123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	ADIPOR2,colon,carcinoma,0,1	ADIPOR2	NM_024551	exon7	c.G916A	p.A306T	AAGGCCGCCACCA	.	110.0	67.0	147.0	0.0	.	30	.	.	Atlas-SNP
ATF7	11016	hgsc.bcm.edu	hg19	12	53928285	53928285	+	Splice_Site	SNP	C	C	G	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	ATF7	NM_006856	exon7	c.560+1G>C	.	TACTTACCCCATT	.	111.0	6.0	106.0	0.0	.	51	.	.	Atlas-SNP
SLITRK5	26050	hgsc.bcm.edu	hg19	13	88329198	88329198	+	Missense_Mutation	SNP	G	G	A	rs372673658		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	SLITRK5	NM_015567	exon2	c.G1555A	p.A519T	CTGCAGGCCATGC	.	48.0	33.0	89.0	0.0	.	192	.	.	Atlas-SNP
METTL17	64745	hgsc.bcm.edu	hg19	14	21464877	21464877	+	Silent	SNP	G	G	T	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	METTL17	NM_001029991	exon13	c.G1272T	p.G424G	GTATGGGGGGTGT	.	48.0	13.0	65.0	0.0	.	46	.	.	Atlas-SNP
SPPL2A	84888	hgsc.bcm.edu	hg19	15	51039809	51039809	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	SPPL2A	NM_032802	exon5	c.T467G	p.I156S	ACAGTAATGTTAT	.	162.0	94.0	207.0	0.0	.	26	.	.	Atlas-SNP
IDH2	3418	hgsc.bcm.edu	hg19	15	90631838	90631838	+	Missense_Mutation	SNP	C	C	T	rs121913503		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	IDH2,NS,haematopoietic_neoplasm,0,179	IDH2	NM_002168	exon4	c.G515A	p.R172K	GCGTGCCTGCCAA	.	100.0	49.0	151.0	0.0	.	1372	.	.	Atlas-SNP
XYLT1	64131	hgsc.bcm.edu	hg19	16	17353089	17353089	+	Silent	SNP	G	G	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	XYLT1,NS,carcinoma,0,1	XYLT1	NM_022166	exon3	c.C669T	p.A223A	GGCTGCGGCTCTG	.	153.0	69.0	148.0	0.0	.	147	.	.	Atlas-SNP
TBC1D26	353149	hgsc.bcm.edu	hg19	17	15644532	15644532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	TBC1D26	NM_178571	exon10	c.G643A	p.A215T	TTGCTCGCTGGTG	.	22.0	14.0	37.0	0.0	.	16	.	.	Atlas-SNP
RCN3	57333	hgsc.bcm.edu	hg19	19	50031779	50031779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	RCN3	NM_020650	exon2	c.G50A	p.G17E	GGCACGGGGCCCA	.	78.0	28.0	82.0	0.0	.	28	.	.	Atlas-SNP
POLD1	5424	hgsc.bcm.edu	hg19	19	50917028	50917028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	POLD1	NM_002691	exon19	c.G2280T	p.M760I	CGTCATGTGCCGA	.	56.0	7.0	51.0	0.0	.	174	.	.	Atlas-SNP
FPR1	2357	hgsc.bcm.edu	hg19	19	52249927	52249927	+	Silent	SNP	G	G	T	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	FPR1,NS,carcinoma,0,1	FPR1	NM_001193306	exon3	c.C321A	p.I107I	CAAGTTGATGTCC	.	102.0	40.0	75.0	0.0	.	64	.	.	Atlas-SNP
SSC5D	284297	hgsc.bcm.edu	hg19	19	56011599	56011599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	SSC5D,NS,carcinoma,0,2	SSC5D	NM_001195267	exon10	c.C2122T	p.R708W	CGAGAACGGACCA	.	36.0	10.0	36.0	0.0	.	65	.	.	Atlas-SNP
ADRM1	11047	hgsc.bcm.edu	hg19	20	60882773	60882773	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	ADRM1	NM_175573	exon7	c.G745C	p.G249R	AGTTCCGGGAATG	.	69.0	27.0	51.0	0.0	.	28	.	.	Atlas-SNP
ITGB2	3689	hgsc.bcm.edu	hg19	21	46309959	46309959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	ITGB2	NM_000211	exon12	c.G1591A	p.G531R	ACTGCCCGTATAT	.	82.0	38.0	99.0	0.0	.	107	.	.	Atlas-SNP
PMM1	5372	hgsc.bcm.edu	hg19	22	41980580	41980580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	PMM1	NM_002676	exon3	c.C233T	p.A78V	TTCTCGGCAAACA	.	35.0	4.0	58.0	0.0	.	21	.	.	Atlas-SNP
ND2	0	hgsc.bcm.edu	hg19	MT	4975	4975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	.	ENST00000361453	exon1	c.G506A	p.G169E	GAGGTGGATTAAA	.	28.0	11.0	15.0	0.0	.	.	.	.	Atlas-SNP
ND4	0	hgsc.bcm.edu	hg19	MT	10927	10927	+	Silent	SNP	T	T	C	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	.	ENST00000361381	exon1	c.T168C	p.F56F	AACCTTTTCCTCC	.	23.0	23.0	12.0	0.0	.	.	.	.	Atlas-SNP
KCNN3	3782	hgsc.bcm.edu	hg19	1	154842230	154842231	+	In_Frame_Ins	INS	-	-	CTGCTGCTGCTG	rs3831942	alternate_allele	TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	KCNN3	NM_001204087	exon1	c.211_212insCAGCAGCAGCAG	p.Q71delinsQQQQQ	.	.	66.0	18.0	78.0	0.0	.	141	.	.	Atlas-INDEL
CD81	975	hgsc.bcm.edu	hg19	11	2416714	2416715	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	CD81	NM_004356	exon5	c.423_424insAA	p.N141fs	.	.	57.0	30.0	82.0	0.0	.	11	.	.	Atlas-Indel,Pindel
MED29	55588	hgsc.bcm.edu	hg19	19	39883132	39883133	+	Frame_Shift_Ins	INS	-	-	GATTCAGAAC	novel		TCGA-ED-A82E-01A-11D-A34Z-10	TCGA-ED-A82E-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	64aa69e5-4ab1-45b5-aca6-c2584ac511a3	6a4d2501-89d2-42d5-9182-f5eb7a368506	.	MED29	NM_017592	exon2	c.308_309insGATTCAGAAC	p.L103fs	.	.	52.0	13.0	86.0	0.0	.	13	.	.	Pindel