Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ERRFI1	54206	hgsc.bcm.edu	hg19	1	8073831	8073831	+	Silent	SNP	G	G	A	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	ERRFI1	NM_018948	exon4	c.C828T	p.S276S	TTCATCGGAGTTA	.	68.0	44.0	161.0	0.0	.	42	.	.	Atlas-SNP
CDC42	998	hgsc.bcm.edu	hg19	1	22405002	22405002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	CDC42	NM_001039802	exon3	c.G31A	p.D11N	GTGGGCGATGGTG	.	42.0	27.0	103.0	0.0	.	26	.	.	Atlas-SNP
SNIP1	79753	hgsc.bcm.edu	hg19	1	38006245	38006245	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	SNIP1	NM_024700	exon3	c.T439G	p.S147A	GGTGGGAATGGCC	.	48.0	20.0	83.0	0.0	.	44	.	.	Atlas-SNP
MACF1	23499	hgsc.bcm.edu	hg19	1	39789908	39789908	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	MACF1	NM_012090	exon35	c.A4295G	p.K1432R	AGGTTAAAGAACT	.	200.0	31.0	331.0	0.0	.	909	.	.	Atlas-SNP
CTH	1491	hgsc.bcm.edu	hg19	1	70899550	70899550	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	CTH	NM_001902	exon9	c.A917T	p.Q306L	AGCGTCAGTGTAC	.	50.0	8.0	82.0	0.0	.	48	.	.	Atlas-SNP
CLCA2	9635	hgsc.bcm.edu	hg19	1	86916392	86916392	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	CLCA2	NM_006536	exon12	c.T2131A	p.Y711N	GCTATGTATGTAC	.	67.0	40.0	99.0	0.0	.	102	.	.	Atlas-SNP
DENND2C	163259	hgsc.bcm.edu	hg19	1	115144131	115144131	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	DENND2C	NM_001256404	exon13	c.A1813T	p.K605X	TCACCTTTGAAAA	.	263.0	121.0	451.0	0.0	.	105	.	.	Atlas-SNP
KCNN3	3782	hgsc.bcm.edu	hg19	1	154842253	154842253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	KCNN3	NM_001204087	exon1	c.C188A	p.P63H	TGCGGAGGCTGAG	.	75.0	7.0	57.0	0.0	.	141	.	.	Atlas-SNP
BCAN	63827	hgsc.bcm.edu	hg19	1	156616637	156616637	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	BCAN	NM_198427	exon3	c.C136A	p.Q46K	CCACTGCAGGGCG	.	159.0	107.0	156.0	0.0	.	174	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	185972870	185972870	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	HMCN1	NM_031935	exon29	c.A4369G	p.T1457A	ATAGGTACCAACT	.	104.0	38.0	137.0	0.0	.	797	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	185988695	185988695	+	Silent	SNP	A	A	G	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	HMCN1	NM_031935	exon35	c.A5493G	p.S1831S	GTCCTCAGGCCTT	.	92.0	23.0	107.0	0.0	.	797	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186157140	186157140	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	HMCN1	NM_031935	exon106	c.G16540C	p.G5514R	GTTTCAGGGTATG	.	99.0	17.0	99.0	0.0	.	797	.	.	Atlas-SNP
LAMB3	3914	hgsc.bcm.edu	hg19	1	209796353	209796353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	LAMB3	NM_000228	exon17	c.G2530A	p.A844T	GCTGGGCATTGAA	.	131.0	46.0	137.0	0.0	.	136	.	.	Atlas-SNP
SIX3	6496	hgsc.bcm.edu	hg19	2	45171797	45171797	+	Silent	SNP	G	G	A	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	SIX3	NM_005413	exon2	c.G897A	p.T299T	GTCCACGGCGGCC	.	205.0	43.0	322.0	0.0	.	24	.	.	Atlas-SNP
FN1	2335	hgsc.bcm.edu	hg19	2	216273051	216273051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	FN1	NM_212476	exon16	c.A2398G	p.S800G	TCAAACTCTGCTC	.	197.0	72.0	270.0	0.0	.	521	.	.	Atlas-SNP
ANKMY1	51281	hgsc.bcm.edu	hg19	2	241463326	241463326	+	Missense_Mutation	SNP	C	C	T	rs373595407		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	ANKMY1	NM_016552	exon7	c.G1541A	p.R514Q	ATCCTCCGCATGG	.	41.0	19.0	52.0	0.0	.	112	.	.	Atlas-SNP
CXXC11	285093	hgsc.bcm.edu	hg19	2	242815105	242815105	+	Silent	SNP	G	G	A	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	C2orf85,NS,carcinoma,0,1	.	NM_173821	exon2	c.G1398A	p.T466T	CATCACGGTTAGT	.	53.0	19.0	82.0	0.0	.	.	.	.	Atlas-SNP
FYCO1	79443	hgsc.bcm.edu	hg19	3	45977942	45977942	+	Silent	SNP	C	C	A	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	FYCO1	NM_024513	exon15	c.G4038T	p.L1346L	TTACATCAGTTCT	.	58.0	32.0	99.0	0.0	.	115	.	.	Atlas-SNP
HGD	3081	hgsc.bcm.edu	hg19	3	120369681	120369681	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	HGD	NM_000187	exon6	c.T374A	p.I125K	GACTTTATGTCTC	.	84.0	21.0	114.0	0.0	.	65	.	.	Atlas-SNP
CCDC37	348807	hgsc.bcm.edu	hg19	3	126153141	126153141	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	CCDC37	NM_182628	exon15	c.T1545G	p.D515E	GCTGGATGAGCTG	.	178.0	53.0	278.0	0.0	.	69	.	.	Atlas-SNP
MCF2L2	23101	hgsc.bcm.edu	hg19	3	183017980	183017980	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	MCF2L2	NM_015078	exon11	c.C1118G	p.P373R	TCCAGGGGCTCCT	.	42.0	13.0	50.0	0.0	.	164	.	.	Atlas-SNP
DDX46	9879	hgsc.bcm.edu	hg19	5	134147507	134147507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	DDX46	NM_014829	exon18	c.A2408G	p.D803G	TACAAGATTCAGA	.	86.0	20.0	179.0	0.0	.	77	.	.	Atlas-SNP
PCDHGB1	56104	hgsc.bcm.edu	hg19	5	140730929	140730929	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	PCDHGB1_ENST00000523390,NS,carcinoma,-1,4	PCDHGB1	NM_018922	exon1	c.C1102T	p.R368X	AAAGTGCGAGACA	.	48.0	28.0	81.0	0.0	.	198	.	.	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	hg19	5	169412861	169412861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	DOCK2	NM_004946	exon29	c.C2928A	p.F976L	CATGTTCAAGGAC	.	54.0	11.0	93.0	0.0	.	389	.	.	Atlas-SNP
SLC44A4	80736	hgsc.bcm.edu	hg19	6	31842544	31842544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	SLC44A4	NM_025257	exon6	c.A422G	p.Y141C	TTTGTATAGAAGA	.	104.0	53.0	157.0	0.0	.	67	.	.	Atlas-SNP
BMP5	653	hgsc.bcm.edu	hg19	6	55623820	55623820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	BMP5	NM_021073	exon6	c.G1198A	p.A400T	CTATAGCGTGGTT	.	85.0	40.0	108.0	0.0	.	94	.	.	Atlas-SNP
HTR1E	3354	hgsc.bcm.edu	hg19	6	87725376	87725376	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	HTR1E	NM_000865	exon2	c.C324A	p.C108X	CACCTGCTCCATC	.	67.0	22.0	119.0	0.0	.	89	.	.	Atlas-SNP
NR2E1	7101	hgsc.bcm.edu	hg19	6	108492696	108492696	+	Silent	SNP	C	C	T	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	NR2E1	NM_003269	exon2	c.C60T	p.G20G	GTGTGGCGACCGC	.	54.0	17.0	101.0	0.0	.	57	.	.	Atlas-SNP
TTLL2	83887	hgsc.bcm.edu	hg19	6	167754181	167754181	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	TTLL2	NM_031949	exon3	c.T793A	p.F265I	ACTGGCTTTAAGC	.	40.0	10.0	91.0	0.0	.	82	.	.	Atlas-SNP
MLLT4	4301	hgsc.bcm.edu	hg19	6	168352526	168352526	+	Nonsense_Mutation	SNP	G	G	T	rs371470293	alternate_allele	TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	MLLT4	NM_001040000	exon29	c.G4471T	p.E1491X	ACGATCGAGCGCA	.	175.0	117.0	292.0	1.0	.	351	.	.	Atlas-SNP
WBSCR17	64409	hgsc.bcm.edu	hg19	7	71175897	71175897	+	Missense_Mutation	SNP	G	G	A	rs370276097		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	WBSCR17	NM_022479	exon10	c.G1652A	p.R551H	ACAAGCGCTGGAA	.	40.0	6.0	58.0	0.0	.	208	.	.	Atlas-SNP
MRPL15	29088	hgsc.bcm.edu	hg19	8	55047918	55047918	+	Silent	SNP	C	C	T	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	MRPL15	NM_014175	exon1	c.C75T	p.A25A	CCTGGCCAACTTA	.	435.0	126.0	508.0	0.0	.	26	.	.	Atlas-SNP
NCOA2	10499	hgsc.bcm.edu	hg19	8	71128948	71128948	+	Silent	SNP	G	G	A	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	NCOA2	NM_006540	exon3	c.C33T	p.P11P	CCTGGAGGGGTCA	.	197.0	29.0	117.0	0.0	.	147	.	.	Atlas-SNP
MMP16	4325	hgsc.bcm.edu	hg19	8	89209504	89209504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	MMP16	NM_005941	exon2	c.C164T	p.P55L	TCAGTCGGTGGAA	.	210.0	29.0	147.0	0.0	.	176	.	.	Atlas-SNP
VPS13B	157680	hgsc.bcm.edu	hg19	8	100443809	100443809	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	VPS13B	NM_152564	exon22	c.T3127C	p.S1043P	AATATATCTGAAA	.	172.0	8.0	117.0	0.0	.	811	.	.	Atlas-SNP
ANGPT1	284	hgsc.bcm.edu	hg19	8	108297043	108297043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	ANGPT1	NM_001146	exon7	c.G1072T	p.G358W	CATTCCCCAGCCA	.	237.0	41.0	165.0	0.0	.	111	.	.	Atlas-SNP
PLEC	5339	hgsc.bcm.edu	hg19	8	144994165	144994165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	PLEC	NM_201380	exon32	c.G10235A	p.R3412H	CCCGTGCGGAACT	.	147.0	12.0	70.0	0.0	.	1144	.	.	Atlas-SNP
ZNF483	158399	hgsc.bcm.edu	hg19	9	114304927	114304927	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	ZNF483	NM_133464	exon6	c.G1712C	p.R571T	ATCAGAGAATTCA	.	80.0	40.0	110.0	0.0	.	78	.	.	Atlas-SNP
RASSF4	83937	hgsc.bcm.edu	hg19	10	45486499	45486499	+	Silent	SNP	C	C	T	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	RASSF4	NM_032023	exon9	c.C789T	p.G263G	CTTGGGCGTGGAA	.	22.0	12.0	40.0	0.0	.	33	.	.	Atlas-SNP
NCOA4	8031	hgsc.bcm.edu	hg19	10	51584844	51584844	+	Missense_Mutation	SNP	C	C	T	rs148951318		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	NCOA4	NM_001145261	exon9	c.C991T	p.R331W	AAGCTGCGGAAGC	.	37.0	20.0	52.0	0.0	.	58	.	C|1.000;T|0.000	Atlas-SNP
ANXA11	311	hgsc.bcm.edu	hg19	10	81926706	81926706	+	Silent	SNP	C	C	G	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	ANXA11	NM_145868	exon7	c.G684C	p.G228G	GCGACTCCCCAGG	.	21.0	9.0	41.0	0.0	.	32	.	.	Atlas-SNP
TIAL1	7073	hgsc.bcm.edu	hg19	10	121338278	121338278	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	TIAL1	NM_001033925	exon7	c.G567A	p.W189X	AGTGGCCCAATTG	.	103.0	20.0	162.0	0.0	.	47	.	.	Atlas-SNP
C10orf90	118611	hgsc.bcm.edu	hg19	10	128147623	128147623	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	C10orf90	NM_001004298	exon6	c.C1883A	p.P628H	GGATGGGGAATCG	.	42.0	25.0	64.0	0.0	.	121	.	.	Atlas-SNP
MRGPRD	116512	hgsc.bcm.edu	hg19	11	68747517	68747517	+	Silent	SNP	G	G	A	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	MRGPRD	NM_198923	exon1	c.C939T	p.T313T	GCCCACGGTGGGC	.	38.0	31.0	65.0	0.0	.	53	.	.	Atlas-SNP
DDX47	51202	hgsc.bcm.edu	hg19	12	12974235	12974235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	DDX47	NM_201224	exon3	c.G275A	p.R92H	CGCAGCGTTTGTT	.	86.0	31.0	135.0	0.0	.	37	.	.	Atlas-SNP
OR6C74	254783	hgsc.bcm.edu	hg19	12	55641389	55641389	+	Silent	SNP	G	G	T	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	OR6C74	NM_001005490	exon1	c.G318T	p.G106G	CTTGGGGGCAACT	.	57.0	22.0	80.0	0.0	.	52	.	.	Atlas-SNP
TSFM	10102	hgsc.bcm.edu	hg19	12	58186770	58186770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	TSFM	NM_001172696	exon6	c.G548T	p.G183V	CTTAGGGTTTCTT	.	64.0	21.0	109.0	0.0	.	26	.	.	Atlas-SNP
BBS10	79738	hgsc.bcm.edu	hg19	12	76741192	76741192	+	Silent	SNP	T	T	G	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	BBS10	NM_024685	exon2	c.A573C	p.S191S	CAACTGTGAAATA	.	109.0	33.0	182.0	0.0	.	46	.	.	Atlas-SNP
PRDM4	11108	hgsc.bcm.edu	hg19	12	108136024	108136024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	PRDM4	NM_012406	exon9	c.A1583G	p.Y528C	CGGCTATAATAAA	.	69.0	24.0	119.0	0.0	.	64	.	.	Atlas-SNP
SDSL	113675	hgsc.bcm.edu	hg19	12	113874658	113874658	+	Silent	SNP	G	G	C	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	SDSL,NS,carcinoma,0,1	SDSL	NM_138432	exon8	c.G774C	p.V258V	GGCTGTGAGCGCT	.	17.0	7.0	47.0	0.0	.	36	.	.	Atlas-SNP
PDS5B	23047	hgsc.bcm.edu	hg19	13	33232401	33232401	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	PDS5B	NM_015032	exon4	c.A338T	p.Q113L	CAAGACAGTTGAA	.	240.0	108.0	363.0	0.0	.	141	.	.	Atlas-SNP
NPAS3	64067	hgsc.bcm.edu	hg19	14	34029335	34029335	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	NPAS3	NM_001164749	exon5	c.T477A	p.D159E	CCTGGATGGCTTT	.	175.0	33.0	262.0	0.0	.	266	.	.	Atlas-SNP
OTX2	5015	hgsc.bcm.edu	hg19	14	57270981	57270981	+	Silent	SNP	G	G	T	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	OTX2	NM_001270525	exon2	c.C198A	p.A66A	GGTCTTGGCAAAC	.	62.0	16.0	126.0	0.0	.	47	.	.	Atlas-SNP
ITPK1	3705	hgsc.bcm.edu	hg19	14	93407963	93407963	+	Silent	SNP	C	C	G	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	ITPK1	NM_001142593	exon11	c.G1188C	p.S396S	GCTGGGCGACACG	.	42.0	22.0	59.0	0.0	.	53	.	.	Atlas-SNP
USP50	373509	hgsc.bcm.edu	hg19	15	50822035	50822035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	USP50	NM_203494	exon6	c.A895G	p.I299V	GGAAAATTGAGCA	.	100.0	34.0	181.0	0.0	.	24	.	.	Atlas-SNP
CCDC102A	92922	hgsc.bcm.edu	hg19	16	57555012	57555012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	CCDC102A	NM_033212	exon4	c.C889A	p.L297M	TGCTCAGCTCCTC	.	22.0	16.0	38.0	0.0	.	22	.	.	Atlas-SNP
NTN1	9423	hgsc.bcm.edu	hg19	17	8926432	8926432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	NTN1	NM_004822	exon2	c.C742T	p.R248C	GACATCCGCGTGG	.	48.0	34.0	81.0	0.0	.	31	.	.	Atlas-SNP
HAP1	9001	hgsc.bcm.edu	hg19	17	39888530	39888530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	HAP1	NM_001079870	exon3	c.G690A	p.M230I	CTCCTCCATCAAA	.	79.0	20.0	123.0	0.0	.	48	.	.	Atlas-SNP
GHDC	84514	hgsc.bcm.edu	hg19	17	40344403	40344403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	GHDC	NM_001142623	exon5	c.C745T	p.R249W	GTCCCCGTGGCCC	.	39.0	9.0	74.0	0.0	.	63	.	.	Atlas-SNP
CHAF1A	10036	hgsc.bcm.edu	hg19	19	4433231	4433231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	CHAF1A	NM_005483	exon13	c.G2368T	p.A790S	GAGGATGCCGCCA	.	48.0	12.0	114.0	0.0	.	69	.	.	Atlas-SNP
UNC13A	23025	hgsc.bcm.edu	hg19	19	17752293	17752293	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	UNC13A	NM_001080421	exon20	c.G2545T	p.A849S	TCCAGGCATCGTC	.	74.0	14.0	135.0	0.0	.	299	.	.	Atlas-SNP
GDF15	9518	hgsc.bcm.edu	hg19	19	18499391	18499391	+	Silent	SNP	G	G	A	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	GDF15	NM_004864	exon2	c.G573A	p.G191G	CAGGGGGCGCCGC	.	51.0	11.0	84.0	0.0	.	31	.	.	Atlas-SNP
SHANK1	50944	hgsc.bcm.edu	hg19	19	51171702	51171702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	SHANK1	NM_016148	exon22	c.G3515T	p.S1172I	CCCTGGCTGCTGC	.	24.0	13.0	51.0	0.0	.	210	.	.	Atlas-SNP
NRSN2	80023	hgsc.bcm.edu	hg19	20	330326	330326	+	Silent	SNP	C	C	T	rs368963058		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	NRSN2	NM_024958	exon3	c.C39T	p.R13R	CAGCCGCGGCCCC	.	59.0	14.0	32.0	0.0	.	20	.	.	Atlas-SNP
ANKEF1	63926	hgsc.bcm.edu	hg19	20	10035112	10035112	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	.	NM_198798	exon9	c.A2037C	p.E679D	CCAGGAACTGCTG	.	253.0	148.0	271.0	1.0	.	.	.	.	Atlas-SNP
HUNK	30811	hgsc.bcm.edu	hg19	21	33368209	33368209	+	Silent	SNP	C	C	T	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	HUNK	NM_014586	exon10	c.C1434T	p.T478T	GAACACCAAAGCC	.	212.0	39.0	295.0	0.0	.	74	.	.	Atlas-SNP
C22orf42	150297	hgsc.bcm.edu	hg19	22	32555161	32555161	+	Silent	SNP	G	G	C	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	C22orf42	NM_001010859	exon1	c.C42G	p.G14G	GTTGAGGCCCCCG	.	28.0	12.0	68.0	0.0	.	37	.	.	Atlas-SNP
SBF1	6305	hgsc.bcm.edu	hg19	22	50903443	50903443	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	SBF1	NM_002972	exon12	c.A1319G	p.D440G	AACAGGTCCGTAG	.	67.0	20.0	106.0	0.0	.	211	.	.	Atlas-SNP
CYLC1	1538	hgsc.bcm.edu	hg19	X	83128066	83128066	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	CYLC1	NM_021118	exon4	c.A350G	p.K117R	ATAAAAAGTCCAA	.	274.0	84.0	649.0	0.0	.	272	.	.	Atlas-SNP
TRIP11	9321	hgsc.bcm.edu	hg19	14	92472196	92472197	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.,1	TRIP11	NM_004239	exon11	c.2124_2125insA	p.N708fs	.	.	60.0	30.0	117.0	0.0	.	184	.	.	Atlas-INDEL
SNRNP200	23020	hgsc.bcm.edu	hg19	2	96943407	96943412	+	In_Frame_Del	DEL	CCATTG	CCATTG	-	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	CCATTG	CCATTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	SNRNP200	NM_014014	exon41	c.5797_5802del	p.1933_1934del	.	.	33.0	11.0	44.0	0.0	.	195	.	.	Atlas-INDEL
C10orf137	26098	hgsc.bcm.edu	hg19	10	127412384	127412385	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	C10orf137	NM_015608	exon4	c.389_390insA	p.I130fs	.	.	264.0	120.0	450.0	0.0	.	153	.	.	Atlas-INDEL
UGT2B7	7364	hgsc.bcm.edu	hg19	4	69962520	69962521	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-ED-A8O6-01A-11D-A35Z-10	TCGA-ED-A8O6-10A-01D-A35Z-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	221a49cd-a340-42e9-bd68-d2d4ccbc5de7	e2037316-e8bd-4188-93cb-eb040674c788	.	UGT2B7	NM_001074	exon1	c.281_282del	p.94_94del	.	.	128.0	46.0	181.0	0.0	.	79	.	.	Atlas-INDEL