Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm MTOR 2475 hgsc.bcm.edu hg19 1 11316988 11316988 + Splice_Site SNP A A T novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . MTOR NM_004958 exon5 c.504+2T>A . ACACTCACAGCTG . 28.0 19.0 79.0 0.0 . 327 . . Atlas-SNP RNF220 55182 hgsc.bcm.edu hg19 1 45111114 45111114 + Nonsense_Mutation SNP A A T novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . RNF220 NM_018150 exon12 c.A1399T p.K467X AGCAGCAAGCAGG . 29.0 14.0 148.0 0.0 . 56 . . Atlas-SNP DOCK7 85440 hgsc.bcm.edu hg19 1 62971484 62971484 + Missense_Mutation SNP C C T novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . DOCK7 NM_001271999 exon36 c.G4453A p.V1485I CAGAAACGGTCTG . 20.0 6.0 69.0 0.0 . 184 . . Atlas-SNP DNAJB4 11080 hgsc.bcm.edu hg19 1 78481825 78481825 + Missense_Mutation SNP A A G novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . DNAJB4 NM_007034 exon3 c.A908G p.N303S CAAAAAATCCTGA . 42.0 12.0 94.0 0.0 . 30 . . Atlas-SNP CD5L 922 hgsc.bcm.edu hg19 1 157805798 157805798 + Missense_Mutation SNP C C A novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . CD5L NM_005894 exon3 c.G203T p.G68V GCAGCTCCACAGC . 82.0 49.0 244.0 1.0 . 112 . . Atlas-SNP AXDND1 126859 hgsc.bcm.edu hg19 1 179339142 179339142 + Missense_Mutation SNP G G T novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . AXDND1 NM_144696 exon4 c.G303T p.W101C TGTCTGGCATCAC . 69.0 50.0 129.0 0.0 . 142 . . Atlas-SNP KIDINS220 57498 hgsc.bcm.edu hg19 2 8934018 8934018 + Missense_Mutation SNP G G A novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . KIDINS220 NM_020738 exon12 c.C1198T p.P400S TGTTGGGCCTATA . 24.0 12.0 62.0 0.0 . 136 . . Atlas-SNP BIRC6 57448 hgsc.bcm.edu hg19 2 32724674 32724674 + Silent SNP T T A novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . BIRC6 NM_016252 exon46 c.T8529A p.T2843T ATTCACTCTGGAG . 26.0 9.0 87.0 0.0 . 838 . . Atlas-SNP BIRC6 57448 hgsc.bcm.edu hg19 2 32724675 32724675 + Silent SNP C C T novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 BIRC6_ENST00000421745,NS,carcinoma,0,2 BIRC6 NM_016252 exon46 c.C8530T p.L2844L TTCACTCTGGAGC . 25.0 8.0 87.0 0.0 . 838 . . Atlas-SNP KCNK12 56660 hgsc.bcm.edu hg19 2 47748598 47748598 + Silent SNP G G C novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . KCNK12 NM_022055 exon2 c.C741G p.L247L GAAGTAGAGCGAG . 31.0 11.0 110.0 0.0 . 11 . . Atlas-SNP LRP2 4036 hgsc.bcm.edu hg19 2 170147487 170147487 + Missense_Mutation SNP G G A novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . LRP2 NM_004525 exon8 c.C790T p.H264Y ATTTATGAACATC . 51.0 14.0 186.0 0.0 . 751 . . Atlas-SNP SPHKAP 80309 hgsc.bcm.edu hg19 2 228883534 228883534 + Missense_Mutation SNP G G A novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . SPHKAP NM_030623 exon7 c.C2036T p.S679F TCAATGGAATGCC . 63.0 22.0 194.0 0.0 . 750 . . Atlas-SNP TRIP12 9320 hgsc.bcm.edu hg19 2 230723949 230723949 + Missense_Mutation SNP T T A novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . TRIP12 NM_004238 exon3 c.A440T p.Q147L CTTTTCTGACTCC . 50.0 21.0 101.0 0.0 . 207 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266098 41266098 + Missense_Mutation SNP A A G rs121913396 bycluster TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 CTNNB1,gallbladder,other,+1,128 CTNNB1 NM_001098209 exon3 c.A95G p.D32G ACCTGGACTCTGG . 117.0 18.0 347.0 2.0 . 4904 . . Atlas-SNP DNAH1 25981 hgsc.bcm.edu hg19 3 52428551 52428551 + Missense_Mutation SNP T T C novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . DNAH1 NM_015512 exon67 c.T10697C p.L3566P ACTGGCTGTCAGA . 86.0 28.0 228.0 0.0 . 534 . . Atlas-SNP EPHB3 2049 hgsc.bcm.edu hg19 3 184290761 184290761 + Missense_Mutation SNP G G T novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . EPHB3 NM_004443 exon3 c.G653T p.G218V CCGCAGGCTTCGC . 34.0 16.0 93.0 0.0 . 114 . . Atlas-SNP BCL6 604 hgsc.bcm.edu hg19 3 187447378 187447378 + Missense_Mutation SNP T T A novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . BCL6 NM_001134738 exon4 c.A815T p.D272V TGCATATCACTTC . 37.0 10.0 121.0 0.0 . 107 . . Atlas-SNP BCL6 604 hgsc.bcm.edu hg19 3 187447392 187447392 + Silent SNP T T C novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . BCL6 NM_001134738 exon4 c.A801G p.E267E TGCCTCTTCTGGG . 41.0 11.0 121.0 0.0 . 107 . . Atlas-SNP ATP13A4 84239 hgsc.bcm.edu hg19 3 193174846 193174846 + Missense_Mutation SNP G G T novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . ATP13A4 NM_032279 exon16 c.C1858A p.L620M ATGCCAGTCGGTC . 62.0 22.0 168.0 0.0 . 154 . . Atlas-SNP WNT8A 7478 hgsc.bcm.edu hg19 5 137426639 137426639 + Silent SNP C C T novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . WNT8A NM_058244 exon6 c.C933T p.S311S AAGCAGCTGTAAC . 49.0 25.0 121.0 0.0 . 36 . . Atlas-SNP PCDHA7 56141 hgsc.bcm.edu hg19 5 140215321 140215321 + Silent SNP C C T novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . PCDHA7 NM_031852 exon1 c.C1353T p.N451N CGACAACGCCCCG . 113.0 55.0 379.0 0.0 . 367 . . Atlas-SNP TAP1 6890 hgsc.bcm.edu hg19 6 32816536 32816536 + Missense_Mutation SNP G G A novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . TAP1 NM_000593 exon7 c.C1639T p.R547C GGCAGCGAGGGGT . 37.0 8.0 94.0 0.0 . 39 . . Atlas-SNP ECT2L 345930 hgsc.bcm.edu hg19 6 139202242 139202242 + Missense_Mutation SNP C C T rs368116476 alternate_allele TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . ECT2L NM_001195037 exon14 c.C1814T p.A605V ACAGAGCGATTCT . 62.0 17.0 106.0 0.0 . 75 . . Atlas-SNP NOX3 50508 hgsc.bcm.edu hg19 6 155776225 155776225 + Missense_Mutation SNP G G T novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . NOX3 NM_015718 exon2 c.C87A p.D29E GAACGTGTCAATA . 101.0 52.0 199.0 0.0 . 93 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82581541 82581541 + Missense_Mutation SNP C C T novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 Q9Y6V0-3,NS,carcinoma,0,3 PCLO NM_014510 exon5 c.G8728A p.V2910I TTGTTACGACTGT . 37.0 24.0 81.0 0.0 . 1506 . . Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82784846 82784846 + Missense_Mutation SNP G G T novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . PCLO NM_014510 exon2 c.C1111A p.P371T CTGGAGGCTTAGC . 117.0 16.0 251.0 0.0 . 1506 . . Atlas-SNP ZNF804B 219578 hgsc.bcm.edu hg19 7 88964537 88964537 + Silent SNP C C T novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . ZNF804B NM_181646 exon4 c.C2241T p.H747H AGAACACCACTCA . 58.0 6.0 131.0 0.0 . 322 . . Atlas-SNP ATP5J2-PTCD1 100526740 hgsc.bcm.edu hg19 7 99021404 99021404 + Silent SNP A A G novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . . NM_001198879 exon8 c.T2061C p.F687F CCGGTCAAAGGTG . 66.0 25.0 132.0 0.0 . . . . Atlas-SNP NAPEPLD 222236 hgsc.bcm.edu hg19 7 102760530 102760530 + Silent SNP G G A novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . NAPEPLD NM_001122838 exon3 c.C435T p.L145L ATCCGTGAGAAAT . 56.0 35.0 169.0 0.0 . 49 . . Atlas-SNP PPP1R3A 5506 hgsc.bcm.edu hg19 7 113519408 113519408 + Missense_Mutation SNP T T C novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 PPP1R3A,colon,carcinoma,+1,2 PPP1R3A NM_002711 exon4 c.A1739G p.D580G GACACATCTGCTG . 83.0 48.0 228.0 0.0 . 317 . . Atlas-SNP ZNF398 57541 hgsc.bcm.edu hg19 7 148863347 148863347 + Missense_Mutation SNP A A G novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . ZNF398 NM_170686 exon3 c.A518G p.K173R TCATGAAGGGCAA . 62.0 25.0 145.0 0.0 . 54 . . Atlas-SNP KCNB2 9312 hgsc.bcm.edu hg19 8 73480262 73480262 + Missense_Mutation SNP C C A novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . KCNB2 NM_004770 exon2 c.C293A p.S98Y TCACTTCCATTTT . 63.0 8.0 114.0 0.0 . 228 . . Atlas-SNP TMEM67 91147 hgsc.bcm.edu hg19 8 94800156 94800156 + Silent SNP T T C novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . TMEM67 NM_153704 exon14 c.T1497C p.D499D CAAAGATGCCAAC . 95.0 31.0 147.0 0.0 . 187 . . Atlas-SNP PRPF4 9128 hgsc.bcm.edu hg19 9 116049016 116049016 + Silent SNP C C T novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . PRPF4 NM_004697 exon9 c.C843T p.F281F TGTATTCCATCCC . 37.0 10.0 145.0 0.0 . 56 . . Atlas-SNP NRG3 10718 hgsc.bcm.edu hg19 10 84498384 84498384 + Silent SNP T T C novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 NRG3_ENST00000372142,NS,carcinoma,0,2 NRG3 NM_001165972 exon3 c.T1005C p.T335T GAAAACTGATTCC . 68.0 21.0 158.0 0.0 . 301 . . Atlas-SNP FRA10AC1 118924 hgsc.bcm.edu hg19 10 95436450 95436450 + Splice_Site SNP T T C novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . FRA10AC1 NM_145246 exon13 c.788-2A>G . ATGTCCTGAAAAG . 87.0 45.0 237.0 1.0 . 68 . . Atlas-SNP CYP2C8 1558 hgsc.bcm.edu hg19 10 96802834 96802834 + Missense_Mutation SNP G G C novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 CYP2C8,NS,carcinoma,0,1 CYP2C8 NM_000770 exon7 c.C962G p.A321G ACTTTAGCTGACA . 38.0 14.0 163.0 0.0 . 73 . . Atlas-SNP OAT 4942 hgsc.bcm.edu hg19 10 126092375 126092375 + Missense_Mutation SNP T T A novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . OAT NM_000274 exon6 c.A763T p.R255W GGTGCCTGGTGCA . 41.0 12.0 152.0 0.0 . 25 . . Atlas-SNP BRSK2 9024 hgsc.bcm.edu hg19 11 1466531 1466531 + Missense_Mutation SNP A A G novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . BRSK2 NM_001256630 exon10 c.A958G p.K320E GGGGGCAAGAATG . 33.0 19.0 137.0 0.0 . 97 . . Atlas-SNP ACCSL 390110 hgsc.bcm.edu hg19 11 44072129 44072129 + Nonsense_Mutation SNP G G T novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . ACCSL NM_001031854 exon3 c.G592T p.E198X TGCATTGAGGACA . 63.0 27.0 217.0 0.0 . 57 . . Atlas-SNP TCN1 6947 hgsc.bcm.edu hg19 11 59620709 59620709 + Nonsense_Mutation SNP C C A novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . TCN1 NM_001062 exon8 c.G1207T p.E403X GAAGTTCCCAGTA . 70.0 8.0 198.0 0.0 . 64 . . Atlas-SNP NXF1 10482 hgsc.bcm.edu hg19 11 62560160 62560160 + Missense_Mutation SNP T T A novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . NXF1 NM_006362 exon20 c.A1774T p.N592Y AGTTGTTGTCCTG . 53.0 16.0 177.0 0.0 . 67 . . Atlas-SNP OR8D2 283160 hgsc.bcm.edu hg19 11 124189177 124189177 + Missense_Mutation SNP C C A novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 OR8D2,NS,carcinoma,+1,2 OR8D2 NM_001002918 exon1 c.G917T p.R306M CTTCCCCTAGTCA . 34.0 9.0 70.0 0.0 . 65 . . Atlas-SNP FKBP11 51303 hgsc.bcm.edu hg19 12 49317594 49317594 + Missense_Mutation SNP C C T novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . FKBP11 NM_016594 exon5 c.G359A p.G120E CGTTTTCCATAGG . 65.0 13.0 196.0 0.0 . 12 . . Atlas-SNP TPH2 121278 hgsc.bcm.edu hg19 12 72388234 72388234 + Silent SNP A A G novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . TPH2 NM_173353 exon8 c.A957G p.E319E CCATGAACTCTTG . 41.0 13.0 142.0 0.0 . 81 . . Atlas-SNP FBN1 2200 hgsc.bcm.edu hg19 15 48802359 48802359 + Missense_Mutation SNP A A C novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . FBN1 NM_000138 exon14 c.T1596G p.D532E ACACTCATCAATG . 52.0 21.0 167.0 0.0 . 310 . . Atlas-SNP RPS2 6187 hgsc.bcm.edu hg19 16 2013233 2013233 + Silent SNP G G A rs377086871 TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . RPS2 NM_002952 exon4 c.C292T p.L98L CCCCCAGGAAGAA . 34.0 14.0 129.0 0.0 . 18 . . Atlas-SNP SPAG5 10615 hgsc.bcm.edu hg19 17 26912926 26912926 + Nonsense_Mutation SNP C C A novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . SPAG5 NM_006461 exon7 c.G1696T p.E566X TTGCCTCCTCCCT . 71.0 19.0 206.0 0.0 . 92 . . Atlas-SNP EVI2B 2124 hgsc.bcm.edu hg19 17 29632211 29632211 + Silent SNP T T C novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . EVI2B NM_006495 exon2 c.A417G p.P139P TGACTTTGGTGGT . 292.0 23.0 617.0 0.0 . 33 . . Atlas-SNP KRTAP29-1 100533177 hgsc.bcm.edu hg19 17 39458417 39458417 + Silent SNP C C T rs201973633 TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . KRTAP29-1 NM_001257309 exon1 c.G687A p.S229S ACAAGTCGATGGC . 44.0 12.0 130.0 0.0 . 2 . C|0.998;T|0.002 Atlas-SNP GOSR2 9570 hgsc.bcm.edu hg19 17 45000561 45000561 + Missense_Mutation SNP G G A novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . GOSR2 NM_001012511 exon1 c.G3A p.M1I CGACATGGATCCC . 64.0 19.0 210.0 0.0 . 38 . . Atlas-SNP AANAT 15 hgsc.bcm.edu hg19 17 74465363 74465363 + Missense_Mutation SNP T T A novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . AANAT NM_001166579 exon6 c.T407A p.V136E GCCTTGTGGCCTT . 50.0 19.0 133.0 0.0 . 7 . . Atlas-SNP RNF213 57674 hgsc.bcm.edu hg19 17 78328357 78328357 + Missense_Mutation SNP C C A novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . RNF213 NM_001256071 exon36 c.C10843A p.Q3615K GCTCTCCAGGAGG . 41.0 9.0 73.0 0.0 . 766 . . Atlas-SNP LAMA1 284217 hgsc.bcm.edu hg19 18 7017348 7017348 + Missense_Mutation SNP C C A novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . LAMA1 NM_005559 exon20 c.G2737T p.V913L GGCACACGGCAGA . 21.0 11.0 91.0 0.0 . 458 . . Atlas-SNP PSG1 5669 hgsc.bcm.edu hg19 19 43382065 43382065 + Silent SNP G G A novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . PSG1 NM_001184826 exon2 c.C430T p.L144L ACTTACGGTGTAA . 46.0 10.0 182.0 0.0 . 196 . . Atlas-SNP ZNF667 63934 hgsc.bcm.edu hg19 19 56952618 56952618 + Silent SNP G G A novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . ZNF667 NM_022103 exon5 c.C1746T p.P582P TTCATAGGGTTTC . 29.0 11.0 95.0 0.0 . 95 . . Atlas-SNP PCED1A 64773 hgsc.bcm.edu hg19 20 2819099 2819099 + Missense_Mutation SNP C C A novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . . NM_022760 exon6 c.G620T p.R207L TCCCGCCGCAGGG . 23.0 11.0 78.0 0.0 . . . . Atlas-SNP PAK7 57144 hgsc.bcm.edu hg19 20 9546904 9546904 + Missense_Mutation SNP T T A novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . PAK7 NM_177990 exon5 c.A1118T p.Y373F GACGGGTACTGGT . 20.0 9.0 52.0 0.0 . 194 . . Atlas-SNP SLC2A10 81031 hgsc.bcm.edu hg19 20 45354541 45354541 + Missense_Mutation SNP G G A novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . SLC2A10 NM_030777 exon2 c.G866A p.G289E CCATGGGGCTGGT . 25.0 12.0 118.0 0.0 . 75 . . Atlas-SNP ZNF70 7621 hgsc.bcm.edu hg19 22 24086004 24086004 + Missense_Mutation SNP A A T novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . ZNF70 NM_021916 exon2 c.T1324A p.S442T CCCCAGAATGAAT . 40.0 23.0 166.0 0.0 . 49 . . Atlas-SNP MID1IP1 58526 hgsc.bcm.edu hg19 X 38664209 38664209 + Missense_Mutation SNP A A G novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . MID1IP1 NM_021242 exon2 c.A10G p.I4V ATGCAAATCTGCG . 49.0 39.0 183.0 0.0 . 12 . . Atlas-SNP RGAG1 57529 hgsc.bcm.edu hg19 X 109695030 109695030 + Silent SNP T T A novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . RGAG1 NM_020769 exon3 c.T1185A p.S395S AGCCTCTGGGGTG . 17.0 12.0 57.0 0.0 . 168 . . Atlas-SNP ZNF185 7739 hgsc.bcm.edu hg19 X 152106689 152106689 + Missense_Mutation SNP C C T novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . ZNF185 NM_001178106 exon16 c.C1286T p.A429V AGGATGCAAAGGC . 33.0 26.0 102.0 0.0 . 92 . . Atlas-SNP ALPP 250 hgsc.bcm.edu hg19 2 233245689 233245690 + Frame_Shift_Ins INS - - T novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . ALPP NM_001632 exon9 c.1140_1141insT p.H380fs . . 67.0 14.0 261.0 0.0 . 53 . . Atlas-INDEL YME1L1 10730 hgsc.bcm.edu hg19 10 27436456 27436456 + Frame_Shift_Del DEL G G - novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . YME1L1 NM_139312 exon3 c.311delG p.R104fs . . 90.0 43.0 283.0 0.0 . 71 . . Atlas-Indel,Pindel LOXHD1 125336 hgsc.bcm.edu hg19 18 44089715 44089715 + Frame_Shift_Del DEL C C - novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . LOXHD1 NM_144612 exon34 c.5278delA p.M1760fs . . 46.0 18.0 169.0 0.0 . 367 . . Atlas-Indel,Pindel MFSD6 54842 hgsc.bcm.edu hg19 2 191301480 191301501 + Frame_Shift_Del DEL TGAACTCAAGCACAGCAACCCC TGAACTCAAGCACAGCAACCCC - novel TCGA-EP-A2KC-01A-11D-A20W-10 TCGA-EP-A2KC-10A-01D-A20W-10 TGAACTCAAGCACAGCAACCCC TGAACTCAAGCACAGCAACCCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f0fa04a7-a506-4a22-b41f-ee8b13a9d83c da91c6e7-c91e-4c80-bb15-8e0cd4881866 . MFSD6 NM_017694 exon3 c.724_745del p.242_249del . . 12.0 12.0 0.0 0.0 . 58 . . Pindel