Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
KLHL17	339451	hgsc.bcm.edu	hg19	1	899359	899359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KLHL17	NM_198317	exon9	c.G1415T	p.R472L	GCACCCGGAGGCG	.	36.0	4.0	109.0	0.0	.	31	.	.	Atlas-SNP
TAS1R1	80835	hgsc.bcm.edu	hg19	1	6630972	6630972	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TAS1R1	NM_177540	exon2	c.T195C	p.S65S	CAGGTCTTGTAGC	.	66.0	4.0	85.0	0.0	.	76	.	.	Atlas-SNP
THAP3	90326	hgsc.bcm.edu	hg19	1	6692465	6692465	+	Silent	SNP	G	G	T	rs146637042	byfrequency;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	THAP3	NM_138350	exon4	c.G369T	p.A123A	TGAGGCGGGGGCC	.	95.0	4.0	122.0	0.0	.	43	.	G|1.000;A|0.000	Atlas-SNP
NMNAT1	64802	hgsc.bcm.edu	hg19	1	10042608	10042608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NMNAT1	NM_022787	exon5	c.T689C	p.L230P	GAGCCCTCAGAAG	.	97.0	4.0	159.0	0.0	.	18	.	.	Atlas-SNP
UBE4B	10277	hgsc.bcm.edu	hg19	1	10205093	10205093	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UBE4B	NM_001105562	exon18	c.T2459A	p.L820H	CTCAGCTTAAGGT	.	93.0	4.0	150.0	0.0	.	233	.	.	Atlas-SNP
KAZN	23254	hgsc.bcm.edu	hg19	1	15430640	15430640	+	Missense_Mutation	SNP	G	G	A	rs147449416		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KAZN	NM_201628	exon13	c.G2003A	p.R668Q	TCCTCCGGAGACA	.	73.0	4.0	118.0	0.0	.	57	.	G|1.000;A|0.000	Atlas-SNP
SPEN	23013	hgsc.bcm.edu	hg19	1	16261624	16261624	+	Silent	SNP	C	C	A	rs151181793	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	SPEN,caecum,carcinoma,0,1	SPEN	NM_015001	exon11	c.C8889A	p.P2963P	TGACCCCGTCACC	.	80.0	4.0	196.0	0.0	.	374	.	C|0.998;T|0.002	Atlas-SNP
CLCNKA	1187	hgsc.bcm.edu	hg19	1	16351303	16351303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CLCNKA	NM_004070	exon4	c.G275T	p.R92L	TGCTCCGGTATCT	.	124.0	6.0	241.0	0.0	.	56	.	.	Atlas-SNP
ACTL8	81569	hgsc.bcm.edu	hg19	1	18152877	18152877	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ACTL8	NM_030812	exon3	c.T964C	p.S322P	GTCTCCTCCACCA	.	100.0	4.0	199.0	0.0	.	58	.	.	Atlas-SNP
VWA5B1	127731	hgsc.bcm.edu	hg19	1	20657405	20657405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VWA5B1	NM_001039500	exon11	c.G1501A	p.V501M	AGACTGGTGAAAG	.	110.0	5.0	251.0	0.0	.	44	.	.	Atlas-SNP
ZNF436	80818	hgsc.bcm.edu	hg19	1	23688528	23688528	+	Silent	SNP	G	G	T	rs144729139	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF436	NM_001077195	exon4	c.C1347A	p.T449T	ACATTCGGTACAT	.	88.0	4.0	173.0	0.0	.	49	.	G|1.000;A|0.000	Atlas-SNP
ASAP3	55616	hgsc.bcm.edu	hg19	1	23762411	23762411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ASAP3	NM_017707	exon17	c.T1682C	p.L561P	ACCGACAGGAGGT	.	79.0	4.0	159.0	0.0	.	65	.	.	Atlas-SNP
RPL11	6135	hgsc.bcm.edu	hg19	1	24022327	24022327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	RPL11,NS,carcinoma,-1,1	RPL11	NM_000975	exon5	c.C436T	p.R146C	AAGAAGCGCAGGA	.	73.0	3.0	121.0	0.0	.	21	.	.	Atlas-SNP
PDIK1L	149420	hgsc.bcm.edu	hg19	1	26448825	26448825	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PDIK1L	NM_001243532	exon3	c.A783G	p.T261T	AGAGACAAAGAAG	.	92.0	4.0	168.0	0.0	.	19	.	.	Atlas-SNP
GPATCH3	63906	hgsc.bcm.edu	hg19	1	27219162	27219162	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GPATCH3	NM_022078	exon5	c.A1232G	p.K411R	CTCACCTTGGTGT	.	94.0	4.0	163.0	0.0	.	30	.	.	Atlas-SNP
GPATCH3	63906	hgsc.bcm.edu	hg19	1	27226824	27226824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GPATCH3	NM_022078	exon1	c.G110T	p.R37L	TCTTCTCGGAACT	.	46.0	4.0	129.0	0.0	.	30	.	.	Atlas-SNP
PTPRU	10076	hgsc.bcm.edu	hg19	1	29638034	29638034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PTPRU	NM_005704	exon21	c.T2954C	p.V985A	GCATCGTCATGAT	.	89.0	4.0	178.0	0.0	.	374	.	.	Atlas-SNP
IQCC	55721	hgsc.bcm.edu	hg19	1	32672950	32672950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IQCC	NM_001160042	exon5	c.A908G	p.Q303R	AGTCACAACCAAG	.	110.0	5.0	185.0	0.0	.	46	.	.	Atlas-SNP
BSDC1	55108	hgsc.bcm.edu	hg19	1	32834115	32834115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BSDC1	NM_001143888	exon10	c.A1244G	p.D415G	TCAAAGTCTTTCT	.	94.0	4.0	151.0	0.0	.	52	.	.	Atlas-SNP
KIAA1522	57648	hgsc.bcm.edu	hg19	1	33238480	33238480	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA1522	NM_020888	exon7	c.C3277T	p.L1093L	AAAGAGCTGGCCT	.	82.0	4.0	152.0	0.0	.	68	.	.	Atlas-SNP
ZMYM1	79830	hgsc.bcm.edu	hg19	1	35579987	35579987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZMYM1	NM_024772	exon10	c.G2556T	p.L852F	GACATTGGTTTCC	.	119.0	5.0	173.0	0.0	.	86	.	.	Atlas-SNP
GNL2	29889	hgsc.bcm.edu	hg19	1	38048471	38048471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GNL2	NM_013285	exon7	c.C703A	p.P235T	TGTGAGGGGAACG	.	85.0	5.0	122.0	0.0	.	58	.	.	Atlas-SNP
MACF1	23499	hgsc.bcm.edu	hg19	1	39816575	39816575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MACF1	NM_012090	exon39	c.G4898T	p.R1633L	CTCTTCGGGAAAA	.	51.0	5.0	90.0	0.0	.	909	.	.	Atlas-SNP
PPIE	10450	hgsc.bcm.edu	hg19	1	40218983	40218983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PPIE	NM_006112	exon10	c.C862T	p.P288S	GGGAAGCCAAAGC	.	43.0	4.0	128.0	0.0	.	33	.	.	Atlas-SNP
RLF	6018	hgsc.bcm.edu	hg19	1	40703878	40703878	+	Silent	SNP	G	G	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RLF	NM_012421	exon8	c.G3504C	p.R1168R	ACATCGGTATTCC	.	68.0	4.0	94.0	0.0	.	152	.	.	Atlas-SNP
SMAP2	64744	hgsc.bcm.edu	hg19	1	40881972	40881972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMAP2	NM_022733	exon8	c.T806C	p.L269P	CCATTCTTTCACT	.	65.0	4.0	106.0	0.0	.	48	.	.	Atlas-SNP
WDR65	149465	hgsc.bcm.edu	hg19	1	43664184	43664184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WDR65	NM_152498	exon8	c.A1295G	p.E432G	AAGAAGAGGCATA	.	73.0	4.0	93.0	0.0	.	76	.	.	Atlas-SNP
ARTN	9048	hgsc.bcm.edu	hg19	1	44401362	44401362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ARTN	NM_001136215	exon2	c.T34C	p.S12P	ACGCTGTCCCACT	.	103.0	5.0	192.0	0.0	.	6	.	.	Atlas-SNP
SLC6A9	6536	hgsc.bcm.edu	hg19	1	44468248	44468248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC6A9	NM_201649	exon7	c.A1013G	p.E338G	GCTCCCTCCAGGG	.	73.0	4.0	140.0	0.0	.	109	.	.	Atlas-SNP
PLK3	1263	hgsc.bcm.edu	hg19	1	45266606	45266606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLK3	NM_004073	exon2	c.A305G	p.H102R	AGCCGCATCAGCG	.	74.0	4.0	155.0	0.0	.	41	.	.	Atlas-SNP
ZSWIM5	57643	hgsc.bcm.edu	hg19	1	45484490	45484490	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZSWIM5	NM_020883	exon14	c.T3194C	p.V1065A	CTCTTCACCACCA	.	121.0	6.0	195.0	0.0	.	72	.	.	Atlas-SNP
MUTYH	4595	hgsc.bcm.edu	hg19	1	45799158	45799158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MUTYH	NM_001128425	exon3	c.A275G	p.E92G	GTGACTTCAGCTA	.	92.0	4.0	160.0	0.0	.	38	.	.	Atlas-SNP
ELAVL4	1996	hgsc.bcm.edu	hg19	1	50610679	50610679	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ELAVL4	NM_001144775	exon2	c.A111G	p.T37T	CAATACAAGCAAT	.	79.0	5.0	132.0	0.0	.	124	.	.	Atlas-SNP
LDLRAD1	388633	hgsc.bcm.edu	hg19	1	54474774	54474774	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LDLRAD1	NM_001010978	exon6	c.T499C	p.W167R	GCCACCACCCAGG	.	95.0	5.0	206.0	0.0	.	22	.	.	Atlas-SNP
CDCP2	200008	hgsc.bcm.edu	hg19	1	54618517	54618517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CDCP2	NM_201546	exon1	c.G79A	p.G27S	GCCTACCTTCCAT	.	125.0	26.0	216.0	0.0	.	52	.	.	Atlas-SNP
USP24	23358	hgsc.bcm.edu	hg19	1	55537593	55537593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	USP24	NM_015306	exon67	c.C7694A	p.T2565K	GCTAACGTGTCCT	.	66.0	4.0	137.0	0.0	.	323	.	.	Atlas-SNP
FGGY	55277	hgsc.bcm.edu	hg19	1	60019838	60019838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FGGY	NM_001113411	exon8	c.A842G	p.E281G	TCTGTGAGGGGCA	.	93.0	5.0	153.0	0.0	.	99	.	.	Atlas-SNP
INADL	10207	hgsc.bcm.edu	hg19	1	62330060	62330060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	INADL	NM_176877	exon20	c.A2590G	p.M864V	CAGGAAATGGATG	.	100.0	4.0	170.0	0.0	.	179	.	.	Atlas-SNP
INADL	10207	hgsc.bcm.edu	hg19	1	62582321	62582321	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	INADL	NM_176877	exon36	c.C4773A	p.A1591A	AAATGCCTCACAG	.	51.0	4.0	95.0	0.0	.	179	.	.	Atlas-SNP
DOCK7	85440	hgsc.bcm.edu	hg19	1	63099217	63099217	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DOCK7	NM_001271999	exon10	c.A1068G	p.G356G	ACACTCTCCAATG	.	95.0	4.0	161.0	0.0	.	184	.	.	Atlas-SNP
DNAJC6	9829	hgsc.bcm.edu	hg19	1	65867511	65867511	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DNAJC6	NM_001256864	exon15	c.C2175A	p.T725T	TCCCACCCATCAA	.	73.0	4.0	110.0	0.0	.	104	.	.	Atlas-SNP
WLS	79971	hgsc.bcm.edu	hg19	1	68611689	68611689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WLS	NM_024911	exon9	c.T1141C	p.F381L	TGATGAAGGCCAT	.	59.0	4.0	100.0	0.0	.	97	.	.	Atlas-SNP
RABGGTB	5876	hgsc.bcm.edu	hg19	1	76253187	76253187	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RABGGTB	NM_004582	exon2	c.T9C	p.T3T	GGGCACTCCACAG	.	122.0	6.0	218.0	0.0	.	37	.	.	Atlas-SNP
LPHN2	23266	hgsc.bcm.edu	hg19	1	82409131	82409131	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LPHN2	NM_012302	exon5	c.T876C	p.N292N	GCTGAATCCATAC	.	99.0	4.0	143.0	0.0	.	464	.	.	Atlas-SNP
EPHX4	253152	hgsc.bcm.edu	hg19	1	92528663	92528663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EPHX4	NM_173567	exon7	c.G909T	p.W303C	ACTGTGGGGAGAG	.	94.0	4.0	207.0	0.0	.	46	.	.	Atlas-SNP
EPHX4	253152	hgsc.bcm.edu	hg19	1	92528734	92528734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EPHX4	NM_173567	exon7	c.G980T	p.R327M	ATTTCAGGCTAAC	.	80.0	4.0	93.0	0.0	.	46	.	.	Atlas-SNP
GLMN	11146	hgsc.bcm.edu	hg19	1	92713534	92713534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	GLMN,NS,carcinoma,+2,1	GLMN	NM_053274	exon17	c.A1486G	p.T496A	GTTCTGTCCATAA	.	86.0	4.0	158.0	0.0	.	37	.	.	Atlas-SNP
DPYD	1806	hgsc.bcm.edu	hg19	1	97770913	97770913	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DPYD	NM_000110	exon18	c.C2201A	p.A734D	TTGGTGGCTGTAA	.	97.0	5.0	156.0	0.0	.	219	.	.	Atlas-SNP
DBT	1629	hgsc.bcm.edu	hg19	1	100672056	100672056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DBT	NM_001918	exon9	c.A1154G	p.Q385R	CTGAGCTGACTCA	.	92.0	4.0	140.0	0.0	.	39	.	.	Atlas-SNP
COL11A1	1301	hgsc.bcm.edu	hg19	1	103491374	103491374	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COL11A1	NM_080629	exon6	c.A915G	p.K305K	TTTGGCTTTTGCT	.	138.0	6.0	214.0	0.0	.	972	.	.	Atlas-SNP
KIAA1324	57535	hgsc.bcm.edu	hg19	1	109715162	109715162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA1324	NM_020775	exon5	c.C668A	p.T223N	TGAAGACCACAGA	.	153.0	63.0	236.0	0.0	.	77	.	.	Atlas-SNP
ATXN7L2	127002	hgsc.bcm.edu	hg19	1	110031709	110031709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ATXN7L2	NM_153340	exon7	c.T1024C	p.C342R	CCATACTGTGCAC	.	91.0	4.0	128.0	0.0	.	60	.	.	Atlas-SNP
EPS8L3	79574	hgsc.bcm.edu	hg19	1	110294654	110294654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EPS8L3	NM_139053	exon15	c.C1400T	p.P467L	TCCCGTGGGTTCC	.	186.0	75.0	236.0	0.0	.	73	.	.	Atlas-SNP
CHIA	27159	hgsc.bcm.edu	hg19	1	111862847	111862847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CHIA	NM_201653	exon12	c.C1190T	p.P397L	CGGCTCCAGCTCA	.	82.0	4.0	104.0	0.0	.	115	.	.	Atlas-SNP
ATP5F1	515	hgsc.bcm.edu	hg19	1	111998810	111998810	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ATP5F1	NM_001688	exon4	c.T326C	p.M109T	GTGTAATGGTCTA	.	90.0	4.0	113.0	0.0	.	20	.	.	Atlas-SNP
TTF2	8458	hgsc.bcm.edu	hg19	1	117641477	117641477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TTF2	NM_003594	exon22	c.G3292T	p.A1098S	GATCAAGCTTGTG	.	81.0	4.0	124.0	0.0	.	92	.	.	Atlas-SNP
POLR3C	10623	hgsc.bcm.edu	hg19	1	145598543	145598543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	POLR3C	NM_006468	exon8	c.A950G	p.D317G	GGATCATCTGCCA	.	69.0	4.0	90.0	0.0	.	41	.	.	Atlas-SNP
ILF2	3608	hgsc.bcm.edu	hg19	1	153635509	153635509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ILF2	NM_004515	exon12	c.A907G	p.T303A	CTAGGGTCATGAC	.	122.0	5.0	162.0	0.0	.	25	.	.	Atlas-SNP
DENND4B	9909	hgsc.bcm.edu	hg19	1	153903522	153903522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DENND4B	NM_014856	exon25	c.A4015G	p.T1339A	CAGGGGTTAGCCA	.	70.0	4.0	110.0	0.0	.	210	.	.	Atlas-SNP
SLC39A1	27173	hgsc.bcm.edu	hg19	1	153935029	153935029	+	Missense_Mutation	SNP	G	G	A	rs3211049	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC39A1	NM_001271957	exon2	c.C163T	p.P55S	CTCCTGGCCGGCG	.	118.0	5.0	179.0	0.0	.	24	.	.	Atlas-SNP
CREB3L4	148327	hgsc.bcm.edu	hg19	1	153945673	153945673	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CREB3L4	NM_001255978	exon7	c.T746C	p.V249A	CTAGGGTGGCAGC	.	100.0	4.0	124.0	0.0	.	36	.	.	Atlas-SNP
UBAP2L	9898	hgsc.bcm.edu	hg19	1	154218760	154218760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UBAP2L	NM_001127320	exon11	c.C923A	p.P308H	AGGCTCCTTCTCT	.	78.0	4.0	114.0	0.0	.	197	.	.	Atlas-SNP
ATP8B2	57198	hgsc.bcm.edu	hg19	1	154317184	154317184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ATP8B2	NM_020452	exon21	c.C2308A	p.L770I	GACAAGCTTTCTT	.	76.0	4.0	100.0	0.0	.	158	.	.	Atlas-SNP
IL6R	3570	hgsc.bcm.edu	hg19	1	154437808	154437808	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IL6R	NM_000565	exon10	c.A1359G	p.P453P	GGACCCACGGAGC	.	105.0	5.0	197.0	0.0	.	47	.	.	Atlas-SNP
TDRD10	126668	hgsc.bcm.edu	hg19	1	154515291	154515291	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TDRD10	NM_182499	exon8	c.A497G	p.E166G	CGTTGGAAATGAG	.	93.0	4.0	166.0	0.0	.	48	.	.	Atlas-SNP
DCST2	127579	hgsc.bcm.edu	hg19	1	155005955	155005955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DCST2	NM_144622	exon1	c.C223A	p.Q75K	GGACCTGGCGAGA	.	88.0	5.0	173.0	0.0	.	80	.	.	Atlas-SNP
ARHGEF2	9181	hgsc.bcm.edu	hg19	1	155927648	155927648	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ARHGEF2	NM_001162383	exon13	c.A1571G	p.Q524R	AGATTCTGCAGCG	.	101.0	5.0	131.0	0.0	.	81	.	.	Atlas-SNP
INSRR	3645	hgsc.bcm.edu	hg19	1	156813015	156813015	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	INSRR	NM_014215	exon17	c.T2907C	p.P969P	TTCATCAGGGACA	.	75.0	4.0	131.0	0.0	.	309	.	.	Atlas-SNP
PEAR1	375033	hgsc.bcm.edu	hg19	1	156879570	156879570	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PEAR1	NM_001080471	exon12	c.C1439G	p.P480R	CTGTGCCCTGCCC	.	82.0	4.0	105.0	0.0	.	118	.	.	Atlas-SNP
OR6K2	81448	hgsc.bcm.edu	hg19	1	158670333	158670333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OR6K2	NM_001005279	exon1	c.T110C	p.F37S	ACAATGAAAGCAT	.	87.0	5.0	132.0	0.0	.	104	.	.	Atlas-SNP
ITLN2	142683	hgsc.bcm.edu	hg19	1	160919847	160919847	+	Missense_Mutation	SNP	G	G	T	rs201391588	bycluster;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ITLN2	NM_080878	exon6	c.C710A	p.P237Q	CCATACGGTGAGT	.	93.0	4.0	129.0	0.0	.	35	.	.	Atlas-SNP
C1orf111	284680	hgsc.bcm.edu	hg19	1	162344320	162344320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C1orf111	NM_182581	exon3	c.T304C	p.F102L	ACACGAAGTAGCT	.	83.0	4.0	142.0	0.0	.	26	.	.	Atlas-SNP
RXRG	6258	hgsc.bcm.edu	hg19	1	165398198	165398198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	RXRG,NS,carcinoma,0,1	RXRG	NM_006917	exon2	c.C55T	p.P19S	GGCCAGGGGAGCC	.	93.0	4.0	140.0	0.0	.	91	.	.	Atlas-SNP
TIPRL	261726	hgsc.bcm.edu	hg19	1	168169255	168169255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TIPRL	NM_152902	exon7	c.G790T	p.D264Y	CCAGCAGACTCAC	.	91.0	4.0	101.0	0.0	.	16	.	.	Atlas-SNP
C1orf114	57821	hgsc.bcm.edu	hg19	1	169388397	169388397	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C1orf114	NM_021179	exon4	c.G1069T	p.E357X	GCTCTTCCTAGTA	.	59.0	4.0	91.0	0.0	.	67	.	.	Atlas-SNP
F5	2153	hgsc.bcm.edu	hg19	1	169512354	169512354	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	F5	NM_000130	exon14	c.1976-2A>G	.	AGTTCCTACAGAA	.	73.0	23.0	103.0	0.0	.	301	.	.	Atlas-SNP
DNM3	26052	hgsc.bcm.edu	hg19	1	171958288	171958288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DNM3	NM_001136127	exon4	c.G589T	p.G197C	CCTCAAGGTGAGT	.	76.0	4.0	131.0	0.0	.	85	.	.	Atlas-SNP
PAPPA2	60676	hgsc.bcm.edu	hg19	1	176564279	176564279	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	PAPPA2_ENST00000367661,NS,carcinoma,0,2	PAPPA2	NM_021936	exon3	c.C1539T	p.Y513Y	CCAGTACAATGGA	.	61.0	3.0	68.0	1.0	.	665	.	.	Atlas-SNP
ZNF648	127665	hgsc.bcm.edu	hg19	1	182026597	182026597	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF648	NM_001009992	exon2	c.C549A	p.S183S	CCCTGCGGACGTG	.	96.0	6.0	152.0	0.0	.	111	.	.	Atlas-SNP
LAMC1	3915	hgsc.bcm.edu	hg19	1	183111868	183111868	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LAMC1	NM_002293	exon28	c.C4773T	p.D1591D	GGAGGACATCAGG	.	95.0	4.0	113.0	0.0	.	176	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186031705	186031705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HMCN1	NM_031935	exon48	c.A7486G	p.S2496G	AAACAGAGTGTTA	.	86.0	5.0	123.0	0.0	.	797	.	.	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	hg19	1	186157064	186157064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HMCN1	NM_031935	exon106	c.G16464A	p.M5488I	TCGCATGTGCTTC	.	119.0	6.0	186.0	0.0	.	797	.	.	Atlas-SNP
IGFN1	91156	hgsc.bcm.edu	hg19	1	201186487	201186487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IGFN1	NM_001164586	exon17	c.C9668T	p.A3223V	GGACAGCACCTCG	.	182.0	23.0	235.0	0.0	.	220	.	.	Atlas-SNP
LGR6	59352	hgsc.bcm.edu	hg19	1	202287998	202287998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LGR6	NM_001017403	exon18	c.C2567T	p.A856V	CTGCGGCCGGGGA	.	94.0	4.0	167.0	0.0	.	102	.	.	Atlas-SNP
LAX1	54900	hgsc.bcm.edu	hg19	1	203741220	203741220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LAX1	NM_017773	exon4	c.G335T	p.R112L	GTATGCGCATTTT	.	67.0	4.0	107.0	0.0	.	48	.	.	Atlas-SNP
SOX13	9580	hgsc.bcm.edu	hg19	1	204083543	204083543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SOX13	NM_005686	exon3	c.A314G	p.N105S	ACTTCAACCGAAA	.	92.0	4.0	166.0	0.0	.	38	.	.	Atlas-SNP
PIK3C2B	5287	hgsc.bcm.edu	hg19	1	204403607	204403607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PIK3C2B	NM_002646	exon25	c.C3646A	p.R1216S	GGAAGCGGCCAAA	.	99.0	4.0	135.0	0.0	.	142	.	.	Atlas-SNP
NFASC	23114	hgsc.bcm.edu	hg19	1	204938107	204938107	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NFASC	NM_015090	exon10	c.A1033G	p.K345E	AGAGTAAAGGGTA	.	89.0	4.0	188.0	0.0	.	396	.	.	Atlas-SNP
NUAK2	81788	hgsc.bcm.edu	hg19	1	205273191	205273191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NUAK2	NM_030952	exon7	c.A1274G	p.D425G	GGAGGGTCCTCCT	.	81.0	4.0	115.0	0.0	.	107	.	.	Atlas-SNP
INTS7	25896	hgsc.bcm.edu	hg19	1	212139822	212139822	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	INTS7	NM_015434	exon16	c.A2133T	p.L711F	TATCAGTAAACAG	.	90.0	39.0	111.0	0.0	.	68	.	.	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	hg19	1	215963585	215963585	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	USH2A	NM_206933	exon51	c.A9998G	p.D3333G	ATGGTATCTGACA	.	122.0	5.0	156.0	0.0	.	1168	.	.	Atlas-SNP
EPRS	2058	hgsc.bcm.edu	hg19	1	220203778	220203778	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EPRS	NM_004446	exon6	c.A573G	p.P191P	CGCACCTGGAAGC	.	62.0	4.0	92.0	0.0	.	140	.	.	Atlas-SNP
TLR5	7100	hgsc.bcm.edu	hg19	1	223286028	223286028	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TLR5	NM_003268	exon6	c.C346T	p.Q116X	GTCCCTGAAAAGC	.	121.0	5.0	156.0	0.0	.	86	.	.	Atlas-SNP
TLR5	7100	hgsc.bcm.edu	hg19	1	223286221	223286221	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TLR5	NM_003268	exon6	c.C153A	p.L51L	CAGCAGGAGCCTC	.	123.0	5.0	122.0	0.0	.	86	.	.	Atlas-SNP
CDC42BPA	8476	hgsc.bcm.edu	hg19	1	227216408	227216408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CDC42BPA	NM_003607	exon29	c.G4277A	p.R1426Q	GATCTTCGGCCCT	.	85.0	4.0	166.0	0.0	.	528	.	.	Atlas-SNP
PGBD5	79605	hgsc.bcm.edu	hg19	1	230486728	230486728	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PGBD5	NM_001258311	exon3	c.T870C	p.C290C	GGAAGAACATTGT	.	93.0	4.0	123.0	0.0	.	73	.	.	Atlas-SNP
NID1	4811	hgsc.bcm.edu	hg19	1	236157008	236157008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NID1	NM_002508	exon13	c.T2692C	p.C898R	CCACGCACCAGCA	.	77.0	4.0	161.0	0.0	.	196	.	.	Atlas-SNP
EDARADD	128178	hgsc.bcm.edu	hg19	1	236645629	236645629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	EDARADD,NS,carcinoma,0,1	EDARADD	NM_145861	exon6	c.C328T	p.P110S	CGGGCCCCCACCA	.	73.0	4.0	143.0	0.0	.	31	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237947885	237947885	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RYR2	NM_001035	exon90	c.C12873T	p.F4291F	TATTTTCATGACC	.	42.0	4.0	69.0	0.0	.	1273	.	.	Atlas-SNP
KMO	8564	hgsc.bcm.edu	hg19	1	241718930	241718930	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KMO	NM_003679	exon5	c.A331G	p.R111G	GTAAGCAGAGAAA	.	84.0	4.0	94.0	0.0	.	69	.	.	Atlas-SNP
WDR64	128025	hgsc.bcm.edu	hg19	1	241886642	241886642	+	Silent	SNP	C	C	A	rs145843472	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WDR64	NM_144625	exon9	c.C1068A	p.T356T	CAGCACCAAGCCA	.	76.0	4.0	110.0	0.0	.	234	.	C|1.000;T|0.000	Atlas-SNP
CNST	163882	hgsc.bcm.edu	hg19	1	246810803	246810803	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CNST	NM_152609	exon9	c.T1300C	p.L434L	GAGCCGTTGATTT	.	94.0	4.0	121.0	0.0	.	73	.	.	Atlas-SNP
SNTG2	54221	hgsc.bcm.edu	hg19	2	1168816	1168816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SNTG2	NM_018968	exon8	c.T538C	p.S180P	GGGGCCTCCTCTC	.	121.0	5.0	128.0	0.0	.	125	.	.	Atlas-SNP
GREB1	9687	hgsc.bcm.edu	hg19	2	11778934	11778934	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GREB1	NM_014668	exon32	c.A5685G	p.K1895K	TCTGAAAGGTAAC	.	141.0	6.0	178.0	0.0	.	308	.	.	Atlas-SNP
NBAS	51594	hgsc.bcm.edu	hg19	2	15694236	15694236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NBAS	NM_015909	exon4	c.G236T	p.G79V	ACCAGTCCATCAG	.	124.0	5.0	124.0	0.0	.	246	.	.	Atlas-SNP
UBXN2A	165324	hgsc.bcm.edu	hg19	2	24199877	24199877	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	UBXN2A,colon,carcinoma,0,1	UBXN2A	NM_181713	exon4	c.C219A	p.T73T	ATTCACCGTCAAC	.	52.0	3.0	82.0	0.0	.	20	.	.	Atlas-SNP
HADHB	3032	hgsc.bcm.edu	hg19	2	26502146	26502146	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HADHB	NM_000183	exon9	c.A774G	p.E258E	GGATGAAGGACTC	.	83.0	4.0	131.0	0.0	.	50	.	.	Atlas-SNP
OTOF	9381	hgsc.bcm.edu	hg19	2	26699053	26699053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OTOF	NM_194248	exon23	c.A2809G	p.K937E	CTGCCTTGACCTC	.	51.0	4.0	56.0	0.0	.	524	.	.	Atlas-SNP
DPYSL5	56896	hgsc.bcm.edu	hg19	2	27147810	27147810	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DPYSL5	NM_001253724	exon3	c.A317G	p.E106G	ACAAGGAGACCTC	.	81.0	4.0	101.0	0.0	.	69	.	.	Atlas-SNP
MAPRE3	22924	hgsc.bcm.edu	hg19	2	27248785	27248785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MAPRE3	NM_012326	exon6	c.A662G	p.K221R	TGGAGAAGGAACG	.	86.0	4.0	96.0	0.0	.	40	.	.	Atlas-SNP
TMEM214	54867	hgsc.bcm.edu	hg19	2	27258486	27258486	+	Missense_Mutation	SNP	G	G	A	rs375315795		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TMEM214	NM_017727	exon4	c.G527A	p.R176Q	TGAGCCGGGAGCT	.	59.0	15.0	88.0	0.0	.	41	.	.	Atlas-SNP
YPEL5	51646	hgsc.bcm.edu	hg19	2	30381672	30381672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	YPEL5	NM_001127400	exon4	c.A329G	p.E110G	AGAGTGAGGGCTT	.	76.0	4.0	84.0	0.0	.	16	.	.	Atlas-SNP
HEATR5B	54497	hgsc.bcm.edu	hg19	2	37246965	37246965	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	HEATR5B,NS,carcinoma,0,1	HEATR5B	NM_019024	exon26	c.C4091A	p.A1364E	GCTTTCGCTATTA	.	39.0	2.0	51.0	0.0	.	185	.	.	Atlas-SNP
FBXO11	80204	hgsc.bcm.edu	hg19	2	48132835	48132835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FBXO11	NM_001190274	exon1	c.C25T	p.R9W	GTCTCCGGTTGGC	.	86.0	4.0	111.0	0.0	.	127	.	.	Atlas-SNP
CLHC1	130162	hgsc.bcm.edu	hg19	2	55433452	55433452	+	Silent	SNP	A	A	G	rs151168260		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_152385	exon9	c.T960C	p.S320S	TCTAGGACTGTTT	.	97.0	4.0	97.0	0.0	.	.	.	A|1.000;G|0.000	Atlas-SNP
ARHGAP25	9938	hgsc.bcm.edu	hg19	2	69043419	69043419	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ARHGAP25	NM_001166277	exon6	c.688-2A>G	.	CTTCCCAGGCTCA	.	78.0	4.0	88.0	0.0	.	175	.	.	Atlas-SNP
C2orf42	54980	hgsc.bcm.edu	hg19	2	70408789	70408789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C2orf42	NM_017880	exon3	c.T329C	p.L110P	GAGCTCAGCTGAG	.	100.0	4.0	120.0	0.0	.	30	.	.	Atlas-SNP
TIA1	7072	hgsc.bcm.edu	hg19	2	70441567	70441567	+	Silent	SNP	T	T	C	rs373531585		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TIA1	NM_022173	exon12	c.A948G	p.A316A	TTGTTGTGCATTT	.	123.0	5.0	152.0	0.0	.	37	.	.	Atlas-SNP
DYSF	8291	hgsc.bcm.edu	hg19	2	71892352	71892352	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DYSF	NM_001130987	exon47	c.C5235T	p.C1745C	CTTCTGCCAGCAG	.	57.0	4.0	83.0	0.0	.	536	.	.	Atlas-SNP
DCTN1	1639	hgsc.bcm.edu	hg19	2	74590545	74590545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DCTN1	NM_004082	exon28	c.C3221T	p.P1074L	TGCCCAGGGATGG	.	50.0	4.0	64.0	0.0	.	110	.	.	Atlas-SNP
CTNNA2	1496	hgsc.bcm.edu	hg19	2	80101205	80101205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CTNNA2	NM_001164883	exon6	c.C589A	p.L197M	CAGGAGCTGAAGG	.	72.0	4.0	60.0	0.0	.	462	.	.	Atlas-SNP
CAPG	822	hgsc.bcm.edu	hg19	2	85628289	85628289	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CAPG	NM_001256140	exon5	c.A515G	p.Q172R	CCCACCTGGCCCA	.	144.0	6.0	159.0	0.0	.	32	.	.	Atlas-SNP
RPIA	22934	hgsc.bcm.edu	hg19	2	89036184	89036184	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RPIA	NM_144563	exon7	c.C729T	p.V243V	GGCTGTCAACAAG	.	70.0	4.0	94.0	0.0	.	35	.	.	Atlas-SNP
ZNF514	84874	hgsc.bcm.edu	hg19	2	95815310	95815310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF514	NM_032788	exon5	c.A920G	p.Q307R	GTCCTCTGATGCT	.	119.0	5.0	142.0	0.0	.	34	.	.	Atlas-SNP
FAM178B	51252	hgsc.bcm.edu	hg19	2	97586981	97586981	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FAM178B	NM_001122646	exon12	c.A1483G	p.T495A	TCAGGGTGCAGCA	.	59.0	4.0	94.0	0.0	.	35	.	.	Atlas-SNP
MAP4K4	9448	hgsc.bcm.edu	hg19	2	102490567	102490567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MAP4K4	NM_145686	exon24	c.A2761G	p.R921G	GGGATGAGACCAG	.	111.0	6.0	158.0	0.0	.	111	.	.	Atlas-SNP
SH3RF3	344558	hgsc.bcm.edu	hg19	2	110015186	110015186	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	SH3RF3,right_upper_lobe,carcinoma,0,1	SH3RF3	NM_001099289	exon4	c.G1086T	p.A362A	AGGGGCGGTCAGT	.	78.0	4.0	104.0	0.0	.	62	.	.	Atlas-SNP
FBLN7	129804	hgsc.bcm.edu	hg19	2	112933383	112933383	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FBLN7	NM_153214	exon4	c.A499G	p.T167A	GGAAGGACTGGGA	.	72.0	4.0	91.0	0.0	.	49	.	.	Atlas-SNP
AMMECR1L	83607	hgsc.bcm.edu	hg19	2	128628438	128628438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	AMMECR1L,NS,carcinoma,0,1	AMMECR1L	NM_031445	exon5	c.G583A	p.V195I	GGGAGACAGAGCA	.	125.0	70.0	157.0	0.0	.	22	.	.	Atlas-SNP
THSD7B	80731	hgsc.bcm.edu	hg19	2	138400205	138400205	+	Splice_Site	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	THSD7B	NM_001080427	exon20	c.3857+2T>A	.	TGGAGGTAGGTCA	.	52.0	4.0	70.0	0.0	.	506	.	.	Atlas-SNP
UPP2	151531	hgsc.bcm.edu	hg19	2	158971674	158971674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UPP2	NM_001135098	exon5	c.A413G	p.E138G	ACAAGGAGCTCGG	.	133.0	6.0	125.0	0.0	.	60	.	.	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	hg19	2	170058302	170058302	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LRP2	NM_004525	exon44	c.A8288G	p.Y2763C	TCATTGTAGTAAT	.	70.0	4.0	81.0	0.0	.	751	.	.	Atlas-SNP
PDK1	5163	hgsc.bcm.edu	hg19	2	173423557	173423557	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PDK1	NM_002610	exon2	c.C318T	p.S106S	ACCATCCGTTCAA	.	99.0	5.0	138.0	0.0	.	39	.	.	Atlas-SNP
HNRNPA3	220988	hgsc.bcm.edu	hg19	2	178083814	178083814	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HNRNPA3	NM_194247	exon9	c.A1011G	p.G337G	TAGTGGACAACAG	.	87.0	4.0	116.0	0.0	.	42	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179413062	179413062	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TTN	NM_001267550	exon339	c.T93291C	p.G31097G	ACCAACACCATAC	.	56.0	4.0	86.0	0.0	.	18412	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179419855	179419855	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TTN	NM_001267550	exon331	c.T88331C	p.L29444P	TATTCTAGAGGCA	.	98.0	4.0	98.0	0.0	.	18412	.	.	Atlas-SNP
CCDC141	285025	hgsc.bcm.edu	hg19	2	179742806	179742806	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CCDC141	NM_173648	exon12	c.A1784G	p.D595G	GCATCATCCTGCT	.	75.0	4.0	95.0	0.0	.	362	.	.	Atlas-SNP
ZSWIM2	151112	hgsc.bcm.edu	hg19	2	187698746	187698746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZSWIM2	NM_182521	exon6	c.G755A	p.C252Y	TCTATGCATTCGG	.	96.0	4.0	122.0	0.0	.	119	.	.	Atlas-SNP
ANKRD44	91526	hgsc.bcm.edu	hg19	2	197954757	197954757	+	Splice_Site	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ANKRD44	NM_001195144	exon12	c.1101-1G>T	.	CCACACCTGAGGA	.	105.0	5.0	95.0	0.0	.	281	.	.	Atlas-SNP
ALS2	57679	hgsc.bcm.edu	hg19	2	202568849	202568849	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ALS2	NM_020919	exon33	c.T4931C	p.L1644S	ACCTTCAAGGTGG	.	112.0	6.0	122.0	0.0	.	172	.	.	Atlas-SNP
BMPR2	659	hgsc.bcm.edu	hg19	2	203420956	203420956	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BMPR2	NM_001204	exon12	c.C2568A	p.T856T	GGACACCCGGCTG	.	90.0	5.0	85.0	0.0	.	142	.	.	Atlas-SNP
ZDBF2	57683	hgsc.bcm.edu	hg19	2	207170906	207170906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZDBF2	NM_020923	exon5	c.A1654G	p.R552G	GTTGACAGACCCC	.	63.0	5.0	84.0	0.0	.	531	.	.	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	hg19	2	210843335	210843335	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UNC80	NM_032504	exon58	c.T8823C	p.S2941S	CCGCTCTAACACG	.	85.0	4.0	107.0	0.0	.	280	.	.	Atlas-SNP
GPBAR1	151306	hgsc.bcm.edu	hg19	2	219127947	219127947	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GPBAR1	NM_170699	exon2	c.A500T	p.Y167F	ACCTGTACCTCGA	.	81.0	5.0	110.0	0.0	.	22	.	.	Atlas-SNP
DNPEP	23549	hgsc.bcm.edu	hg19	2	220251502	220251502	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DNPEP	NM_012100	exon5	c.220-2A>G	.	AAGTACTGAGGAG	.	63.0	4.0	68.0	0.0	.	40	.	.	Atlas-SNP
SPEG	10290	hgsc.bcm.edu	hg19	2	220333748	220333748	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	SPEG,NS,carcinoma,0,1	SPEG	NM_005876	exon12	c.C3469A	p.R1157R	GAGCCCCGGACAG	.	47.0	3.0	114.0	0.0	.	272	.	.	Atlas-SNP
WDFY1	57590	hgsc.bcm.edu	hg19	2	224760297	224760297	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	WDFY1,colon,carcinoma,0,1	WDFY1	NM_020830	exon7	c.G649T	p.G217X	ATGCTCCTGAGAA	.	69.0	3.0	100.0	0.0	.	46	.	.	Atlas-SNP
SPHKAP	80309	hgsc.bcm.edu	hg19	2	228881964	228881964	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	SPHKAP_ENST00000392056,NS,carcinoma,0,4	SPHKAP	NM_030623	exon7	c.C3606A	p.I1202I	TCTTTCGATGTCC	.	37.0	2.0	83.0	0.0	.	750	.	.	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	hg19	2	238289710	238289710	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COL6A3	NM_004369	exon5	c.T1745C	p.I582T	TTCCCAATGGCAA	.	66.0	4.0	84.0	0.0	.	608	.	.	Atlas-SNP
KLHL30	377007	hgsc.bcm.edu	hg19	2	239056574	239056574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KLHL30	NM_198582	exon6	c.C1250T	p.A417V	TCTCGGCTGCCGG	.	76.0	4.0	95.0	0.0	.	79	.	.	Atlas-SNP
SNED1	25992	hgsc.bcm.edu	hg19	2	241979607	241979607	+	Splice_Site	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SNED1	NM_001080437	exon7	c.1159+2T>A	.	GATGGGTGAGTGG	.	82.0	5.0	110.0	0.0	.	76	.	.	Atlas-SNP
HDLBP	3069	hgsc.bcm.edu	hg19	2	242186199	242186199	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	HDLBP,NS,carcinoma,0,1	HDLBP	NM_005336	exon16	c.C1918A	p.R640R	TGCTCCGGGCAGC	.	122.0	5.0	121.0	0.0	.	118	.	.	Atlas-SNP
CRBN	51185	hgsc.bcm.edu	hg19	3	3221342	3221342	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CRBN	NM_001173482	exon1	c.T30C	p.A10A	GTGCGCAGCGTCC	.	161.0	8.0	234.0	0.0	.	29	.	.	Atlas-SNP
LRRN1	57633	hgsc.bcm.edu	hg19	3	3887042	3887042	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LRRN1	NM_020873	exon2	c.T717C	p.D239D	TCTGGATAGCCTT	.	66.0	4.0	79.0	0.0	.	82	.	.	Atlas-SNP
RAF1	5894	hgsc.bcm.edu	hg19	3	12653516	12653516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RAF1	NM_002880	exon3	c.G253T	p.A85S	TGAGTGCTTTCAT	.	86.0	4.0	90.0	0.0	.	66	.	.	Atlas-SNP
SATB1	6304	hgsc.bcm.edu	hg19	3	18458441	18458441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SATB1	NM_002971	exon3	c.C341T	p.A114V	AGCAATGCCATTT	.	96.0	4.0	114.0	0.0	.	96	.	.	Atlas-SNP
STT3B	201595	hgsc.bcm.edu	hg19	3	31574743	31574743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STT3B	NM_178862	exon1	c.T253C	p.F85L	GCCGGCTTCAGCT	.	83.0	4.0	114.0	0.0	.	52	.	.	Atlas-SNP
CLASP2	23122	hgsc.bcm.edu	hg19	3	33759302	33759302	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CLASP2	NM_015097	exon1	c.C193A	p.R65R	TTACCCGGTAGTT	.	86.0	5.0	113.0	0.0	.	138	.	.	Atlas-SNP
TRANK1	9881	hgsc.bcm.edu	hg19	3	36880152	36880152	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TRANK1	NM_014831	exon18	c.T5204C	p.L1735P	TGGGCCAGGGCCA	.	136.0	7.0	117.0	0.0	.	398	.	.	Atlas-SNP
VILL	50853	hgsc.bcm.edu	hg19	3	38044780	38044780	+	Missense_Mutation	SNP	G	G	T	rs373953862	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VILL	NM_015873	exon14	c.G1781T	p.R594L	GAGGCCGGGCCCC	.	74.0	4.0	58.0	0.0	.	61	.	.	Atlas-SNP
DLEC1	9940	hgsc.bcm.edu	hg19	3	38080908	38080908	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DLEC1	NM_007337	exon1	c.C192T	p.R64R	GCCCCGCCGCCTC	.	138.0	46.0	176.0	0.0	.	278	.	.	Atlas-SNP
XYLB	9942	hgsc.bcm.edu	hg19	3	38416703	38416703	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	XYLB	NM_005108	exon12	c.C957T	p.H319H	AGGCCACATCTTC	.	88.0	4.0	134.0	0.0	.	50	.	.	Atlas-SNP
ZNF662	389114	hgsc.bcm.edu	hg19	3	42956424	42956424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF662	NM_001134656	exon4	c.C937A	p.Q313K	TTTAGTCAGAACA	.	91.0	4.0	87.0	0.0	.	112	.	.	Atlas-SNP
CDCP1	64866	hgsc.bcm.edu	hg19	3	45135024	45135024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CDCP1	NM_022842	exon6	c.A1372G	p.S458G	CCAGGCTGAGCCT	.	78.0	4.0	84.0	0.0	.	61	.	.	Atlas-SNP
ELP6	54859	hgsc.bcm.edu	hg19	3	47552681	47552681	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001031703	exon2	c.T90C	p.D30D	ACTCCCATCTGTC	.	98.0	4.0	96.0	0.0	.	.	.	.	Atlas-SNP
COL7A1	1294	hgsc.bcm.edu	hg19	3	48609831	48609831	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COL7A1	NM_000094	exon89	c.A6960G	p.G2320G	CAGGTCTCCAGCA	.	153.0	7.0	184.0	0.0	.	320	.	.	Atlas-SNP
P4HTM	54681	hgsc.bcm.edu	hg19	3	49043519	49043519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	P4HTM	NM_177938	exon8	c.A1370G	p.D457G	ACGTGGACCTCCG	.	91.0	4.0	112.0	0.0	.	71	.	.	Atlas-SNP
LAMB2	3913	hgsc.bcm.edu	hg19	3	49159200	49159200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LAMB2	NM_002292	exon30	c.A5017G	p.K1673E	CCCGTTTCAATTT	.	86.0	4.0	88.0	0.0	.	156	.	.	Atlas-SNP
MST1R	4486	hgsc.bcm.edu	hg19	3	49940121	49940121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MST1R	NM_001244937	exon1	c.C922T	p.R308C	CCCGGCGCCTGCG	.	55.0	24.0	72.0	0.0	.	205	.	.	Atlas-SNP
IQCF5	389124	hgsc.bcm.edu	hg19	3	51908112	51908112	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IQCF5	NM_001145059	exon2	c.A84G	p.R28R	TGTGCGTCGCACC	.	91.0	5.0	96.0	0.0	.	5	.	.	Atlas-SNP
STAB1	23166	hgsc.bcm.edu	hg19	3	52556640	52556640	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STAB1	NM_015136	exon61	c.A6680G	p.E2227G	AGGCTGAGGCGGC	.	88.0	4.0	116.0	0.0	.	178	.	.	Atlas-SNP
ADAMTS9	56999	hgsc.bcm.edu	hg19	3	64599079	64599079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADAMTS9	NM_182920	exon22	c.C3296A	p.S1099Y	TGCATAGATGTTG	.	94.0	4.0	111.0	0.0	.	206	.	.	Atlas-SNP
EPHA3	2042	hgsc.bcm.edu	hg19	3	89390186	89390186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	EPHA3_ENST00000452448,colon,carcinoma,+1,4	EPHA3	NM_005233	exon4	c.G935T	p.R312L	ACTTCCGGGCAGA	.	94.0	4.0	74.0	0.0	.	501	.	.	Atlas-SNP
TBC1D23	55773	hgsc.bcm.edu	hg19	3	100002653	100002653	+	Silent	SNP	C	C	T	rs200870879	by1000genomes;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TBC1D23	NM_001199198	exon4	c.C474T	p.P158P	CATTCCCAGGTAA	.	83.0	4.0	108.0	0.0	.	133	.	C|1.000;G|0.000	Atlas-SNP
NXPE3	91775	hgsc.bcm.edu	hg19	3	101520615	101520615	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_145037	exon5	c.C630T	p.F210F	CTATTTCAAGAGT	.	78.0	4.0	87.0	0.0	.	.	.	.	Atlas-SNP
PLCXD2	257068	hgsc.bcm.edu	hg19	3	111432809	111432809	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	PLCXD2,NS,carcinoma,0,1	PLCXD2	NM_001185106	exon3	c.T700C	p.W234R	GCGCCCTGGGCAA	.	53.0	3.0	93.0	1.0	.	36	.	.	Atlas-SNP
PHLDB2	90102	hgsc.bcm.edu	hg19	3	111658351	111658351	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PHLDB2	NM_001134439	exon7	c.A2160G	p.K720K	AAGCAAACACTTT	.	64.0	4.0	85.0	0.0	.	449	.	.	Atlas-SNP
BOC	91653	hgsc.bcm.edu	hg19	3	112989741	112989741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BOC	NM_033254	exon6	c.T617C	p.V206A	ACCCAGTGACCCA	.	89.0	4.0	130.0	0.0	.	139	.	.	Atlas-SNP
WDR52	55779	hgsc.bcm.edu	hg19	3	113119484	113119484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WDR52	NM_001164496	exon12	c.A1382G	p.D461G	TCTGGGTCCTGGG	.	89.0	4.0	129.0	0.0	.	151	.	.	Atlas-SNP
C3orf30	152405	hgsc.bcm.edu	hg19	3	118870130	118870130	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C3orf30	NM_152539	exon3	c.C1602T	p.C534C	GCTGTGCCAGGTA	.	88.0	4.0	100.0	0.0	.	64	.	.	Atlas-SNP
ARHGAP31	57514	hgsc.bcm.edu	hg19	3	119109740	119109740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ARHGAP31	NM_020754	exon7	c.C791T	p.A264V	ATCCTGCTCGCAA	.	94.0	4.0	118.0	0.0	.	175	.	.	Atlas-SNP
GSK3B	2932	hgsc.bcm.edu	hg19	3	119642320	119642320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GSK3B	NM_002093	exon4	c.T377C	p.V126A	AGATAGACCTCAT	.	70.0	4.0	95.0	0.0	.	119	.	.	Atlas-SNP
PARP14	54625	hgsc.bcm.edu	hg19	3	122437412	122437412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PARP14	NM_017554	exon14	c.T4414C	p.Y1472H	AAGGAGTATCAGG	.	86.0	4.0	93.0	0.0	.	242	.	.	Atlas-SNP
PARP14	54625	hgsc.bcm.edu	hg19	3	122439215	122439215	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PARP14	NM_017554	exon15	c.T4921C	p.S1641P	ACCTGCTCACACT	.	95.0	4.0	103.0	0.0	.	242	.	.	Atlas-SNP
KALRN	8997	hgsc.bcm.edu	hg19	3	124385357	124385357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KALRN	NM_001024660	exon46	c.A6404G	p.D2135G	AGCTGGATGCAGG	.	95.0	5.0	121.0	0.0	.	556	.	.	Atlas-SNP
MCM2	4171	hgsc.bcm.edu	hg19	3	127325501	127325501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MCM2	NM_004526	exon6	c.C942A	p.S314R	GACCAGCTGCACT	.	57.0	4.0	84.0	0.0	.	79	.	.	Atlas-SNP
NME9	347736	hgsc.bcm.edu	hg19	3	138023727	138023727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_178130	exon10	c.A596G	p.E199G	GGCTGCTCCCTCC	.	65.0	4.0	91.0	0.0	.	.	.	.	Atlas-SNP
PIK3CB	5291	hgsc.bcm.edu	hg19	3	138376626	138376626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PIK3CB	NM_006219	exon20	c.G2848A	p.G950S	TAATGCCAAACTT	.	97.0	4.0	134.0	0.0	.	103	.	.	Atlas-SNP
ZBTB38	253461	hgsc.bcm.edu	hg19	3	141164366	141164366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZBTB38	NM_001080412	exon8	c.T3136C	p.C1046R	GGACGGTGCTTTT	.	107.0	6.0	103.0	0.0	.	92	.	.	Atlas-SNP
GK5	256356	hgsc.bcm.edu	hg19	3	141884509	141884509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GK5	NM_001039547	exon16	c.G1545T	p.W515C	TTTGGCCCAGTTT	.	514.0	246.0	651.0	1.0	.	45	.	.	Atlas-SNP
MED12L	116931	hgsc.bcm.edu	hg19	3	150911407	150911407	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MED12L	NM_053002	exon14	c.A2099G	p.D700G	ATTATGACCTCCT	.	121.0	5.0	133.0	0.0	.	271	.	.	Atlas-SNP
OTOL1	131149	hgsc.bcm.edu	hg19	3	161221321	161221321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OTOL1	NM_001080440	exon4	c.G1025T	p.R342L	TGCCCCGGTCGGC	.	106.0	5.0	164.0	0.0	.	63	.	.	Atlas-SNP
SLITRK3	22865	hgsc.bcm.edu	hg19	3	164907028	164907028	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	SLITRK3,right_upper_lobe,carcinoma,0,1	SLITRK3	NM_014926	exon2	c.C1591A	p.R531R	TGAGCCGGGCCAG	.	60.0	3.0	88.0	0.0	.	263	.	.	Atlas-SNP
TBL1XR1	79718	hgsc.bcm.edu	hg19	3	176744244	176744244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TBL1XR1	NM_024665	exon15	c.A1435G	p.S479G	TATAGCTGTGAAC	.	99.0	4.0	96.0	0.0	.	87	.	.	Atlas-SNP
ZMAT3	64393	hgsc.bcm.edu	hg19	3	178745434	178745434	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZMAT3	NM_022470	exon4	c.C557A	p.S186X	ACCTACGAGAATG	.	81.0	4.0	104.0	0.0	.	42	.	.	Atlas-SNP
EPHB3	2049	hgsc.bcm.edu	hg19	3	184290572	184290572	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EPHB3	NM_004443	exon3	c.T464C	p.V155A	CCTACGTGAAAGT	.	60.0	4.0	91.0	0.0	.	114	.	.	Atlas-SNP
SLC51A	200931	hgsc.bcm.edu	hg19	3	195955119	195955119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_152672	exon5	c.T496C	p.C166R	TGCCCCTGCTGTC	.	59.0	4.0	82.0	0.0	.	.	.	.	Atlas-SNP
FBXO45	200933	hgsc.bcm.edu	hg19	3	196304623	196304623	+	Silent	SNP	A	A	T	rs374910244	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FBXO45	NM_001105573	exon2	c.A618T	p.L206L	TCTACTACATAAT	.	49.0	4.0	94.0	0.0	.	18	.	.	Atlas-SNP
ZNF141	7700	hgsc.bcm.edu	hg19	4	367349	367349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF141	NM_003441	exon4	c.G1123T	p.A375S	GGCAAAGCCTTTG	.	91.0	4.0	122.0	0.0	.	48	.	.	Atlas-SNP
ZFYVE28	57732	hgsc.bcm.edu	hg19	4	2306996	2306996	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZFYVE28	NM_020972	exon8	c.C1071T	p.S357S	CAAAGAGGACATC	.	94.0	4.0	109.0	0.0	.	79	.	.	Atlas-SNP
ADRA2C	152	hgsc.bcm.edu	hg19	4	3768868	3768868	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADRA2C	NM_000683	exon1	c.T535C	p.S179P	CTCATCTCGGCCG	.	91.0	5.0	157.0	0.0	.	24	.	.	Atlas-SNP
SLC34A2	10568	hgsc.bcm.edu	hg19	4	25678341	25678341	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	SLC34A2,NS,carcinoma,0,2	SLC34A2	NM_006424	exon13	c.G2043T	p.S681S	TGCCTCGGACTCA	.	66.0	3.0	99.0	1.0	.	93	.	.	Atlas-SNP
PGM2	55276	hgsc.bcm.edu	hg19	4	37847313	37847313	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PGM2	NM_018290	exon8	c.G969T	p.P323P	CGACCCGGATGCT	.	98.0	4.0	128.0	0.0	.	45	.	.	Atlas-SNP
TBC1D1	23216	hgsc.bcm.edu	hg19	4	38055861	38055861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TBC1D1	NM_001253912	exon14	c.G2234T	p.G745V	CTGGTGGGACTCC	.	70.0	4.0	92.0	0.0	.	94	.	.	Atlas-SNP
TLR10	81793	hgsc.bcm.edu	hg19	4	38776477	38776477	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TLR10	NM_001017388	exon2	c.G735T	p.S245S	TAGAACCGATGTC	.	109.0	5.0	130.0	0.0	.	87	.	.	Atlas-SNP
UGDH	7358	hgsc.bcm.edu	hg19	4	39511398	39511398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UGDH	NM_003359	exon6	c.T793C	p.F265L	TTAGAAACTTGTT	.	77.0	4.0	90.0	0.0	.	52	.	.	Atlas-SNP
PDS5A	23244	hgsc.bcm.edu	hg19	4	39850470	39850470	+	Splice_Site	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PDS5A	NM_001100399	exon29	c.3339+1G>A	.	AAATTACCTTTTC	.	65.0	4.0	80.0	0.0	.	114	.	.	Atlas-SNP
NSUN7	79730	hgsc.bcm.edu	hg19	4	40800850	40800850	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NSUN7	NM_024677	exon10	c.A1329G	p.P443P	TTTTCCAGAAGAA	.	94.0	4.0	109.0	0.0	.	70	.	.	Atlas-SNP
GABRB1	2560	hgsc.bcm.edu	hg19	4	47427703	47427703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GABRB1	NM_000812	exon9	c.G1093T	p.G365C	GCCCACGGTAACA	.	96.0	4.0	85.0	0.0	.	107	.	.	Atlas-SNP
CORIN	10699	hgsc.bcm.edu	hg19	4	47628491	47628491	+	Missense_Mutation	SNP	C	C	A	rs373955478	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CORIN	NM_006587	exon17	c.G2246T	p.R749L	AGCCACCGCGGCT	.	122.0	5.0	156.0	0.0	.	154	.	.	Atlas-SNP
SGCB	6443	hgsc.bcm.edu	hg19	4	52890227	52890227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SGCB	NM_000232	exon6	c.T853C	p.Y285H	GCTTGTAGCGTAC	.	133.0	17.0	183.0	0.0	.	35	.	.	Atlas-SNP
KIAA1211	57482	hgsc.bcm.edu	hg19	4	57181298	57181298	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA1211	NM_020722	exon8	c.G1630T	p.G544X	TCCTCCGGAGGGA	.	91.0	4.0	152.0	0.0	.	178	.	.	Atlas-SNP
SLC4A4	8671	hgsc.bcm.edu	hg19	4	72412214	72412214	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC4A4	NM_001098484	exon19	c.C2590A	p.P864T	TCTGCACCTGGAG	.	80.0	4.0	67.0	0.0	.	269	.	.	Atlas-SNP
ALB	213	hgsc.bcm.edu	hg19	4	74275126	74275126	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ALB	NM_000477	exon5	c.T537C	p.L179L	ACTCCTTTTCTTT	.	293.0	172.0	388.0	0.0	.	132	.	.	Atlas-SNP
ALB	213	hgsc.bcm.edu	hg19	4	74275205	74275205	+	Splice_Site	SNP	G	G	A	rs75828235	bycluster;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ALB	NM_000477	exon5	c.615+1G>A	.	CCAAAGGTATTAT	.	144.0	41.0	198.0	0.0	.	132	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79418004	79418004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FRAS1	NM_025074	exon60	c.C9004T	p.P3002S	TTTGAGCCAGAGG	.	91.0	4.0	120.0	0.0	.	779	.	.	Atlas-SNP
BMP3	651	hgsc.bcm.edu	hg19	4	81967507	81967507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BMP3	NM_001201	exon2	c.A932G	p.K311R	ATAAAAAGGATGA	.	92.0	4.0	155.0	0.0	.	59	.	.	Atlas-SNP
SCD5	79966	hgsc.bcm.edu	hg19	4	83601881	83601881	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	SCD5_ENST00000273908,NS,malignant_melanoma,-1,2	SCD5	NM_024906	exon3	c.C548A	p.P183H	ACCACAGGATCAG	.	51.0	3.0	70.0	0.0	.	58	.	.	Atlas-SNP
SCD5	79966	hgsc.bcm.edu	hg19	4	83601977	83601977	+	Missense_Mutation	SNP	A	A	G	rs138660783	bycluster;byfrequency;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SCD5	NM_024906	exon3	c.T452C	p.F151S	AAGAAGAAGCCCC	.	81.0	4.0	118.0	0.0	.	58	.	A|0.999;C|0.001	Atlas-SNP
AGPAT9	84803	hgsc.bcm.edu	hg19	4	84519219	84519219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AGPAT9	NM_001256421	exon11	c.G1012T	p.G338C	CAGTTCGGTGATG	.	45.0	4.0	44.0	0.0	.	41	.	.	Atlas-SNP
AFF1	4299	hgsc.bcm.edu	hg19	4	87967360	87967360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AFF1	NM_001166693	exon3	c.G81T	p.K27N	AGAGAAGGAAAGA	.	99.0	4.0	148.0	0.0	.	102	.	.	Atlas-SNP
PDHA2	5161	hgsc.bcm.edu	hg19	4	96762199	96762199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	PDHA2,caecum,carcinoma,0,2	PDHA2	NM_005390	exon1	c.C898A	p.R300S	AGTTATCGTACAC	.	71.0	37.0	110.0	0.0	.	118	.	.	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123265683	123265683	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA1109	NM_015312	exon72	c.A12700T	p.S4234C	TCTGCAAGCAAAA	.	87.0	4.0	157.0	0.0	.	424	.	.	Atlas-SNP
PLK4	10733	hgsc.bcm.edu	hg19	4	128803010	128803010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLK4	NM_001190799	exon2	c.G55T	p.G19C	CTGCTTGGTAAAG	.	98.0	4.0	181.0	0.0	.	65	.	.	Atlas-SNP
TENM3	55714	hgsc.bcm.edu	hg19	4	183676072	183676072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001080477	exon21	c.G4552T	p.D1518Y	CCAACTGATCAAG	.	53.0	4.0	73.0	0.0	.	.	.	.	Atlas-SNP
MLF1IP	79682	hgsc.bcm.edu	hg19	4	185646185	185646185	+	Silent	SNP	A	A	G	rs374160243		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MLF1IP	NM_024629	exon4	c.T246C	p.A82A	TTCATCAGCATAT	.	83.0	5.0	111.0	0.0	.	33	.	.	Atlas-SNP
CCT5	22948	hgsc.bcm.edu	hg19	5	10254914	10254914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	CCT5,NS,carcinoma,0,1	CCT5	NM_012073	exon3	c.G295A	p.D99N	TCTCAGGATGATG	.	94.0	4.0	169.0	1.0	.	49	.	.	Atlas-SNP
RAI14	26064	hgsc.bcm.edu	hg19	5	34796132	34796132	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RAI14	NM_001145525	exon6	c.G265T	p.G89X	ACTACCGGTATGT	.	119.0	5.0	187.0	0.0	.	100	.	.	Atlas-SNP
NADKD1	133686	hgsc.bcm.edu	hg19	5	36226594	36226594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NADKD1	NM_001085411	exon3	c.C461T	p.A154V	ATGACAGCATCTG	.	71.0	4.0	113.0	0.0	.	47	.	.	Atlas-SNP
LIFR	3977	hgsc.bcm.edu	hg19	5	38481738	38481738	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LIFR	NM_002310	exon20	c.T3253C	p.W1085R	AGGACCACCCTCC	.	96.0	4.0	144.0	0.0	.	348	.	.	Atlas-SNP
RICTOR	253260	hgsc.bcm.edu	hg19	5	38952348	38952348	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RICTOR	NM_152756	exon30	c.C3077A	p.S1026X	GACTCCGAGTTCA	.	91.0	4.0	174.0	0.0	.	182	.	.	Atlas-SNP
DAB2	1601	hgsc.bcm.edu	hg19	5	39390554	39390554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	DAB2,NS,carcinoma,0,1	DAB2	NM_001343	exon5	c.G454T	p.G152W	GTTGCCCGGTTTT	.	58.0	4.0	91.0	0.0	.	124	.	.	Atlas-SNP
CARD6	84674	hgsc.bcm.edu	hg19	5	40853234	40853234	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CARD6	NM_032587	exon3	c.G1800A	p.L600L	GATACTGAACTTG	.	93.0	4.0	193.0	0.0	.	141	.	.	Atlas-SNP
C6	729	hgsc.bcm.edu	hg19	5	41186295	41186295	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C6	NM_001115131	exon6	c.A603G	p.A201A	CTCTCCTGCCAGA	.	97.0	4.0	174.0	0.0	.	197	.	.	Atlas-SNP
C5orf34	375444	hgsc.bcm.edu	hg19	5	43490731	43490731	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C5orf34	NM_198566	exon12	c.1679+2T>C	.	AAAAATACCAATT	.	82.0	4.0	128.0	0.0	.	47	.	.	Atlas-SNP
MRPS30	10884	hgsc.bcm.edu	hg19	5	44815068	44815068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	MRPS30_ENST00000507110,NS,carcinoma,0,2	MRPS30	NM_016640	exon5	c.A1084G	p.T362A	GTGATCACAGATG	.	75.0	3.0	144.0	0.0	.	90	.	.	Atlas-SNP
GPX8	493869	hgsc.bcm.edu	hg19	5	54456944	54456944	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GPX8	NM_001008397	exon2	c.T327C	p.N109N	CTGCAATCAGTTT	.	77.0	4.0	143.0	0.0	.	20	.	.	Atlas-SNP
IL6ST	3572	hgsc.bcm.edu	hg19	5	55237449	55237449	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IL6ST	NM_002184	exon17	c.A2218T	p.S740C	AAATGCTTGGCCT	.	97.0	4.0	155.0	0.0	.	75	.	.	Atlas-SNP
PLK2	10769	hgsc.bcm.edu	hg19	5	57753099	57753099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLK2	NM_006622	exon7	c.C917A	p.P306H	TTGGCAGGAGCCA	.	20.0	4.0	46.0	0.0	.	71	.	.	Atlas-SNP
MAP1B	4131	hgsc.bcm.edu	hg19	5	71489755	71489755	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	MAP1B,NS,carcinoma,0,1	MAP1B	NM_005909	exon5	c.T573C	p.P191P	CTGTCCTGAAGAA	.	37.0	2.0	98.0	0.0	.	243	.	.	Atlas-SNP
MAP1B	4131	hgsc.bcm.edu	hg19	5	71493402	71493402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MAP1B	NM_005909	exon5	c.A4220G	p.E1407G	GATCCGAGTCTGC	.	70.0	4.0	121.0	0.0	.	243	.	.	Atlas-SNP
ARHGEF28	64283	hgsc.bcm.edu	hg19	5	73189069	73189069	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001080479	exon28	c.A3614G	p.K1205R	AAGACAAGAGGAA	.	97.0	4.0	152.0	0.0	.	.	.	.	Atlas-SNP
HMGCR	3156	hgsc.bcm.edu	hg19	5	74638583	74638583	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HMGCR	NM_001130996	exon2	c.A153G	p.P51P	ATGTCCAAAGTTT	.	91.0	5.0	159.0	0.0	.	53	.	.	Atlas-SNP
JMY	133746	hgsc.bcm.edu	hg19	5	78587025	78587025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	JMY	NM_152405	exon4	c.T1430C	p.M477T	AACGGATGGAAAA	.	77.0	4.0	119.0	0.0	.	82	.	.	Atlas-SNP
HOMER1	9456	hgsc.bcm.edu	hg19	5	78692728	78692728	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HOMER1	NM_001277077	exon6	c.406-2A>G	.	ATTTCCTAGAAAA	.	123.0	5.0	240.0	0.0	.	37	.	.	Atlas-SNP
SPZ1	84654	hgsc.bcm.edu	hg19	5	79616053	79616053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SPZ1	NM_032567	exon1	c.T19C	p.S7P	GCTAAGTCAGCTG	.	82.0	4.0	144.0	0.0	.	60	.	.	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	89971070	89971070	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GPR98	NM_032119	exon24	c.G5121A	p.Q1707Q	GCTGCAGTTCTCC	.	53.0	41.0	84.0	0.0	.	605	.	.	Atlas-SNP
MCTP1	79772	hgsc.bcm.edu	hg19	5	94245051	94245051	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MCTP1	NM_024717	exon10	c.A1557G	p.E519E	AAATTGTTCCCTC	.	105.0	6.0	175.0	0.0	.	110	.	.	Atlas-SNP
CHD1	1105	hgsc.bcm.edu	hg19	5	98204197	98204197	+	Splice_Site	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CHD1	NM_001270	exon31	c.4248+2T>A	.	AGGCTTACAATGC	.	53.0	4.0	90.0	0.0	.	137	.	.	Atlas-SNP
ST8SIA4	7903	hgsc.bcm.edu	hg19	5	100231449	100231449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ST8SIA4	NM_175052	exon2	c.T154C	p.S52P	TATCAGAGCTATT	.	105.0	5.0	171.0	0.0	.	77	.	.	Atlas-SNP
EFNA5	1946	hgsc.bcm.edu	hg19	5	106723416	106723416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EFNA5	NM_001962	exon3	c.A475G	p.R159G	TTGGTCTCACAAA	.	66.0	4.0	168.0	0.0	.	16	.	.	Atlas-SNP
STARD4	134429	hgsc.bcm.edu	hg19	5	110837775	110837775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STARD4	NM_139164	exon4	c.A167G	p.Q56R	ACACCTTGGGCTT	.	70.0	4.0	99.0	0.0	.	31	.	.	Atlas-SNP
DMXL1	1657	hgsc.bcm.edu	hg19	5	118576151	118576151	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	DMXL1,colon,carcinoma,0,2	DMXL1	NM_005509	exon41	c.A8626G	p.N2876D	CCTGCCAATAGTT	.	40.0	2.0	101.0	0.0	.	268	.	.	Atlas-SNP
HSD17B4	3295	hgsc.bcm.edu	hg19	5	118867101	118867101	+	Splice_Site	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HSD17B4	NM_001199292	exon21	c.1939+2T>A	.	GTGGAGTAAGTTA	.	84.0	4.0	141.0	0.0	.	63	.	.	Atlas-SNP
SNCAIP	9627	hgsc.bcm.edu	hg19	5	121739502	121739502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SNCAIP	NM_001242935	exon3	c.A26G	p.H9R	CACATCACTCAAG	.	95.0	6.0	142.0	0.0	.	308	.	.	Atlas-SNP
GRAMD3	65983	hgsc.bcm.edu	hg19	5	125813387	125813387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GRAMD3	NM_001146319	exon6	c.T535C	p.S179P	CAGATCTCTATTC	.	130.0	6.0	213.0	0.0	.	30	.	.	Atlas-SNP
ISOC1	51015	hgsc.bcm.edu	hg19	5	128442751	128442751	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ISOC1	NM_016048	exon4	c.T746C	p.L249P	TTGCCCTCGAGGT	.	94.0	4.0	150.0	0.0	.	26	.	.	Atlas-SNP
RAD50	10111	hgsc.bcm.edu	hg19	5	131911482	131911482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RAD50	NM_005732	exon3	c.C227T	p.T76I	AAGAAACAGATGT	.	92.0	4.0	151.0	0.0	.	246	.	.	Atlas-SNP
SEC24A	10802	hgsc.bcm.edu	hg19	5	134022523	134022523	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SEC24A	NM_001252231	exon10	c.T1535C	p.V512A	TTGATGTGTCTCA	.	105.0	5.0	202.0	0.0	.	77	.	.	Atlas-SNP
PCDHB16	57717	hgsc.bcm.edu	hg19	5	140563037	140563037	+	Silent	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PCDHB16	NM_020957	exon1	c.T903A	p.V301V	GGAAGTTCGACTG	.	39.0	27.0	72.0	0.0	.	159	.	.	Atlas-SNP
PCDHGA8	9708	hgsc.bcm.edu	hg19	5	140774716	140774716	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PCDHGA8	NM_014004	exon1	c.T2336C	p.L779P	ACATGCTCATCAG	.	163.0	7.0	255.0	0.0	.	146	.	.	Atlas-SNP
PCDHGC5	56097	hgsc.bcm.edu	hg19	5	140884982	140884982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PCDHGC5	NM_018929	exon3	c.G2542T	p.G848C	GACACCGGCACCT	.	99.0	4.0	161.0	0.0	.	199	.	.	Atlas-SNP
PDE6A	5145	hgsc.bcm.edu	hg19	5	149294528	149294528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PDE6A	NM_000440	exon6	c.A976G	p.K326E	CCTCTTTGCCATG	.	86.0	4.0	126.0	0.0	.	98	.	.	Atlas-SNP
SLC36A2	153201	hgsc.bcm.edu	hg19	5	150712834	150712834	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC36A2	NM_181776	exon7	c.A794T	p.Y265F	AGAGGGTAGGTCT	.	123.0	7.0	185.0	0.0	.	71	.	.	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	hg19	5	150905386	150905386	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FAT2	NM_001447	exon17	c.G10449T	p.L3483L	AGTCACCAGCCAT	.	64.0	4.0	87.0	0.0	.	465	.	.	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	hg19	5	150908752	150908752	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FAT2	NM_001447	exon14	c.A10013G	p.D3338G	ATGACGTCACCCA	.	90.0	4.0	134.0	0.0	.	465	.	.	Atlas-SNP
SPARC	6678	hgsc.bcm.edu	hg19	5	151049257	151049257	+	Missense_Mutation	SNP	T	T	C	rs200223394	bycluster	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SPARC	NM_003118	exon6	c.A419G	p.K140R	TGGAGCTTGTGGC	.	123.0	5.0	163.0	0.0	.	38	.	T|0.999;C|0.001	Atlas-SNP
MFAP3	4238	hgsc.bcm.edu	hg19	5	153432861	153432861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MFAP3	NM_005927	exon3	c.T677C	p.M226T	AGACCATGGAGTT	.	100.0	4.0	206.0	0.0	.	20	.	.	Atlas-SNP
TIMD4	91937	hgsc.bcm.edu	hg19	5	156375500	156375500	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TIMD4	NM_138379	exon5	c.T771C	p.V257V	ATCCCAAACTTTG	.	93.0	4.0	154.0	0.0	.	94	.	.	Atlas-SNP
GABRA6	2559	hgsc.bcm.edu	hg19	5	161128527	161128527	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	GABRA6,NS,carcinoma,0,1	GABRA6	NM_000811	exon9	c.G1110A	p.L370L	TCATCTGAAGAAA	.	40.0	2.0	88.0	0.0	.	139	.	.	Atlas-SNP
TENM2	57451	hgsc.bcm.edu	hg19	5	167489119	167489119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	ODZ2,colon,carcinoma,0,1	.	NM_001122679	exon7	c.G1364T	p.R455L	TTGGTCGGCGGGT	.	75.0	3.0	127.0	1.0	.	.	.	.	Atlas-SNP
WWC1	23286	hgsc.bcm.edu	hg19	5	167882362	167882362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WWC1	NM_015238	exon19	c.T2660C	p.V887A	CTCAGGTGGACAA	.	99.0	4.0	199.0	0.0	.	98	.	.	Atlas-SNP
STK10	6793	hgsc.bcm.edu	hg19	5	171520874	171520874	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STK10	NM_005990	exon9	c.C1096T	p.L366L	GTGCCAGCGGGGT	.	95.0	4.0	150.0	0.0	.	100	.	.	Atlas-SNP
TRIM41	90933	hgsc.bcm.edu	hg19	5	180651508	180651508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TRIM41	NM_201627	exon1	c.C509T	p.P170L	TCACCCCACTGCC	.	95.0	4.0	164.0	0.0	.	96	.	.	Atlas-SNP
HIVEP1	3096	hgsc.bcm.edu	hg19	6	12161737	12161737	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HIVEP1	NM_002114	exon8	c.G6553T	p.E2185X	CCAGATGAGGATG	.	99.0	4.0	116.0	0.0	.	242	.	.	Atlas-SNP
GFOD1	54438	hgsc.bcm.edu	hg19	6	13470694	13470694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GFOD1	NM_001242629	exon2	c.A422G	p.K141R	AAGGGCTTGAAAC	.	98.0	4.0	147.0	0.0	.	38	.	.	Atlas-SNP
TDP2	51567	hgsc.bcm.edu	hg19	6	24653322	24653322	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TDP2	NM_016614	exon6	c.G696A	p.G232G	AGCATGCCCTCTG	.	113.0	5.0	138.0	0.0	.	29	.	.	Atlas-SNP
BTN2A1	11120	hgsc.bcm.edu	hg19	6	26463600	26463600	+	Missense_Mutation	SNP	C	C	T	rs368618565		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BTN2A1	NM_001197234	exon4	c.C559T	p.P187S	GTTGCGCCTGCCC	.	67.0	4.0	79.0	0.0	.	118	.	.	Atlas-SNP
ZKSCAN8	7745	hgsc.bcm.edu	hg19	6	28121227	28121227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_006298	exon6	c.A1169G	p.N390S	GTCAGAACACAGG	.	161.0	8.0	181.0	0.0	.	.	.	.	Atlas-SNP
NKAPL	222698	hgsc.bcm.edu	hg19	6	28227461	28227461	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NKAPL	NM_001007531	exon1	c.A312G	p.E104E	AGAAGAACGGCAG	.	92.0	4.0	74.0	0.0	.	72	.	.	Atlas-SNP
ZSCAN31	64288	hgsc.bcm.edu	hg19	6	28297130	28297130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_030899	exon2	c.G331A	p.V111M	CAGCCACAGCCTC	.	99.0	4.0	124.0	0.0	.	.	.	.	Atlas-SNP
ZKSCAN3	80317	hgsc.bcm.edu	hg19	6	28333988	28333988	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZKSCAN3	NM_024493	exon6	c.A1543G	p.K515E	TGTGGAAAAGGCT	.	72.0	4.0	88.0	0.0	.	50	.	.	Atlas-SNP
PPP1R10	5514	hgsc.bcm.edu	hg19	6	30571268	30571268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PPP1R10	NM_002714	exon16	c.A1748G	p.E583G	AGGATCTCTTGGA	.	72.0	4.0	112.0	0.0	.	60	.	.	Atlas-SNP
GTF2H4	2968	hgsc.bcm.edu	hg19	6	30876860	30876860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	GTF2H4_ENST00000259895,colon,carcinoma,0,2	GTF2H4	NM_001517	exon2	c.G47A	p.C16Y	TACAATGCAGGAA	.	27.0	2.0	43.0	0.0	.	38	.	.	Atlas-SNP
CCHCR1	54535	hgsc.bcm.edu	hg19	6	31113070	31113070	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CCHCR1	NM_001105564	exon13	c.A1749G	p.L583L	TGGTGGTAGGGGA	.	66.0	4.0	69.0	0.0	.	68	.	.	Atlas-SNP
TNXB	7148	hgsc.bcm.edu	hg19	6	32020470	32020470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TNXB	NM_019105	exon26	c.C9086T	p.P3029L	GACACTGGGCCCA	.	118.0	5.0	182.0	0.0	.	553	.	.	Atlas-SNP
TNXB	7148	hgsc.bcm.edu	hg19	6	32057134	32057134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TNXB	NM_019105	exon5	c.T2381C	p.F794S	GCTGTGAATGGGG	.	65.0	4.0	58.0	0.0	.	553	.	.	Atlas-SNP
ATF6B	1388	hgsc.bcm.edu	hg19	6	32085736	32085736	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ATF6B	NM_004381	exon12	c.T1324C	p.F442L	CTGAGAACCCCAG	.	91.0	4.0	137.0	0.0	.	40	.	.	Atlas-SNP
TAP1	6890	hgsc.bcm.edu	hg19	6	32816572	32816572	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TAP1	NM_000593	exon7	c.T1603C	p.S535P	TCTCTGAGGAGCC	.	89.0	4.0	99.0	0.0	.	39	.	.	Atlas-SNP
TAP1	6890	hgsc.bcm.edu	hg19	6	32820940	32820940	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TAP1	NM_000593	exon1	c.G654T	p.G218G	GAGGCTCCCGAGT	.	103.0	32.0	129.0	0.0	.	39	.	.	Atlas-SNP
ZBTB9	221504	hgsc.bcm.edu	hg19	6	33423704	33423704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZBTB9	NM_152735	exon2	c.C827T	p.P276L	CCCCTCCTGCACT	.	96.0	5.0	91.0	0.0	.	23	.	.	Atlas-SNP
BRPF3	27154	hgsc.bcm.edu	hg19	6	36175193	36175193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BRPF3	NM_015695	exon4	c.G1709T	p.R570L	TGATTCGGAAGAG	.	136.0	7.0	181.0	0.0	.	93	.	.	Atlas-SNP
PPIL1	51645	hgsc.bcm.edu	hg19	6	36842499	36842499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PPIL1	NM_016059	exon1	c.A50G	p.E17G	CTGGTCTCCAAGT	.	120.0	5.0	158.0	0.0	.	6	.	.	Atlas-SNP
KIF6	221458	hgsc.bcm.edu	hg19	6	39552745	39552745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIF6	NM_145027	exon9	c.T1006C	p.C336R	ATCTGCAGGTTGA	.	77.0	4.0	97.0	0.0	.	233	.	.	Atlas-SNP
GLTSCR1L	23506	hgsc.bcm.edu	hg19	6	42819934	42819934	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_015349	exon6	c.A1944G	p.P648P	ACTGCCAGGTCAG	.	123.0	5.0	115.0	0.0	.	.	.	.	Atlas-SNP
ZNF318	24149	hgsc.bcm.edu	hg19	6	43308192	43308192	+	Missense_Mutation	SNP	G	G	T	rs377285454	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF318	NM_014345	exon10	c.C3544A	p.R1182S	CTTGGCGGTCCAG	.	59.0	4.0	89.0	0.0	.	175	.	.	Atlas-SNP
CDC5L	988	hgsc.bcm.edu	hg19	6	44371614	44371614	+	Missense_Mutation	SNP	A	A	G	rs370695015		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CDC5L	NM_001253	exon6	c.A608G	p.K203R	AAAGAAAAAGGAA	.	99.0	4.0	118.0	0.0	.	86	.	.	Atlas-SNP
TNFRSF21	27242	hgsc.bcm.edu	hg19	6	47202533	47202533	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TNFRSF21	NM_014452	exon5	c.G1611A	p.T537T	CTCCACCGTCAGG	.	48.0	4.0	78.0	0.0	.	61	.	.	Atlas-SNP
OPN5	221391	hgsc.bcm.edu	hg19	6	47763294	47763294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OPN5	NM_181744	exon4	c.A751G	p.T251A	AAACTGACAAAGG	.	92.0	4.0	89.0	0.0	.	58	.	.	Atlas-SNP
EFHC1	114327	hgsc.bcm.edu	hg19	6	52329890	52329890	+	Silent	SNP	C	C	A	rs371151471	bycluster;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EFHC1	NM_018100	exon6	c.C1114A	p.R372R	AGCAAGCGGGAAC	.	99.0	4.0	121.0	0.0	.	68	.	.	Atlas-SNP
GFRAL	389400	hgsc.bcm.edu	hg19	6	55223877	55223877	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GFRAL	NM_207410	exon6	c.A893C	p.Q298P	TTACACAAAGTGA	.	120.0	63.0	134.0	0.0	.	91	.	.	Atlas-SNP
KIAA1586	57691	hgsc.bcm.edu	hg19	6	56917492	56917492	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA1586	NM_020931	exon4	c.T195C	p.F65F	TCTGTTTCCTAAA	.	81.0	4.0	96.0	0.0	.	59	.	.	Atlas-SNP
C6orf165	154313	hgsc.bcm.edu	hg19	6	88128042	88128042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C6orf165	NM_001031743	exon7	c.G748A	p.D250N	GCCAACGACCCAC	.	81.0	4.0	140.0	0.0	.	116	.	.	Atlas-SNP
RARS2	57038	hgsc.bcm.edu	hg19	6	88229903	88229903	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RARS2	NM_020320	exon13	c.A1107G	p.A369A	CCTTTCTGCCCAG	.	85.0	4.0	179.0	0.0	.	61	.	.	Atlas-SNP
MDN1	23195	hgsc.bcm.edu	hg19	6	90393616	90393616	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MDN1	NM_014611	exon72	c.T11837C	p.V3946A	ATCTTAACAAATT	.	93.0	4.0	157.0	0.0	.	478	.	.	Atlas-SNP
GJA10	84694	hgsc.bcm.edu	hg19	6	90605295	90605295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GJA10	NM_032602	exon1	c.G1108T	p.G370C	TGGCTAGGTACAA	.	71.0	4.0	88.0	0.0	.	83	.	.	Atlas-SNP
EPHA7	2045	hgsc.bcm.edu	hg19	6	93967190	93967190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EPHA7	NM_004440	exon12	c.C2162T	p.A721V	AGAAATGCATCTA	.	100.0	4.0	173.0	0.0	.	251	.	.	Atlas-SNP
MMS22L	253714	hgsc.bcm.edu	hg19	6	97613138	97613138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MMS22L	NM_198468	exon21	c.A3205G	p.I1069V	GCACAATGCATTT	.	73.0	4.0	104.0	0.0	.	102	.	.	Atlas-SNP
PNISR	25957	hgsc.bcm.edu	hg19	6	99856127	99856127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PNISR	NM_015491	exon6	c.C694A	p.L232I	CGGGAAGAGTCCT	.	121.0	5.0	173.0	0.0	.	74	.	.	Atlas-SNP
HACE1	57531	hgsc.bcm.edu	hg19	6	105259252	105259252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HACE1	NM_020771	exon7	c.T551C	p.L184P	CTGTCTAGCAAGC	.	67.0	4.0	117.0	0.0	.	96	.	.	Atlas-SNP
AIM1	202	hgsc.bcm.edu	hg19	6	106999726	106999726	+	Splice_Site	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AIM1	NM_001624	exon12	c.4089-1G>T	.	TTCTTAGATGGGT	.	98.0	4.0	161.0	0.0	.	161	.	.	Atlas-SNP
REV3L	5980	hgsc.bcm.edu	hg19	6	111686477	111686477	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	REV3L	NM_002912	exon15	c.A6744G	p.T2248T	TGCTTGTGTTAAC	.	89.0	4.0	162.0	0.0	.	386	.	.	Atlas-SNP
LAMA4	3910	hgsc.bcm.edu	hg19	6	112466014	112466014	+	Silent	SNP	G	G	T	rs189313630	bycluster;by1000genomes;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	LAMA4,right_upper_lobe,carcinoma,0,1	LAMA4	NM_001105206	exon19	c.C2475A	p.T825T	ACTTCTGGTCTGA	.	39.0	2.0	45.0	0.0	.	227	.	G|1.000;A|0.000	Atlas-SNP
RSPH4A	345895	hgsc.bcm.edu	hg19	6	116943931	116943931	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RSPH4A	NM_001161664	exon2	c.A687G	p.L229L	GGATAGATATGAT	.	97.0	4.0	113.0	0.0	.	54	.	.	Atlas-SNP
SOGA3	387104	hgsc.bcm.edu	hg19	6	127837004	127837004	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001012279	exon2	c.A756G	p.E252E	ACATCCTTCTTTC	.	82.0	4.0	139.0	0.0	.	.	.	.	Atlas-SNP
C6orf58	352999	hgsc.bcm.edu	hg19	6	127902353	127902353	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C6orf58	NM_001010905	exon4	c.T600C	p.F200F	TAAGTTTGATGAT	.	89.0	4.0	128.0	0.0	.	35	.	.	Atlas-SNP
PTPRK	5796	hgsc.bcm.edu	hg19	6	128643368	128643368	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PTPRK	NM_001135648	exon3	c.A311T	p.H104L	ATGCAGTGAGTGT	.	95.0	4.0	134.0	0.0	.	330	.	.	Atlas-SNP
ARHGAP18	93663	hgsc.bcm.edu	hg19	6	129950526	129950526	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ARHGAP18	NM_033515	exon5	c.A758G	p.K253R	TTGCTCTTCTGGA	.	89.0	4.0	158.0	0.0	.	52	.	.	Atlas-SNP
L3MBTL3	84456	hgsc.bcm.edu	hg19	6	130407320	130407320	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	L3MBTL3	NM_032438	exon16	c.T1443C	p.L481L	GAAGCTTGAGGTT	.	98.0	4.0	159.0	0.0	.	99	.	.	Atlas-SNP
TMEM200A	114801	hgsc.bcm.edu	hg19	6	130762130	130762130	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TMEM200A	NM_001258277	exon3	c.T563A	p.L188X	CTGGTTTGATGGG	.	80.0	4.0	194.0	0.0	.	108	.	.	Atlas-SNP
TBPL1	9519	hgsc.bcm.edu	hg19	6	134304019	134304019	+	Splice_Site	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TBPL1	NM_001253676	exon4	c.282+1G>A	.	TTTCAGGTAACGT	.	121.0	5.0	195.0	0.0	.	20	.	.	Atlas-SNP
HBS1L	10767	hgsc.bcm.edu	hg19	6	135358603	135358603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HBS1L	NM_001145207	exon5	c.A992G	p.E331G	ATATTTTCCAACG	.	122.0	5.0	214.0	0.0	.	75	.	.	Atlas-SNP
MAP3K5	4217	hgsc.bcm.edu	hg19	6	136882716	136882716	+	Silent	SNP	G	G	T	rs371929460	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MAP3K5	NM_005923	exon28	c.C3942A	p.T1314T	CCAGTCGGTAAGT	.	128.0	9.0	218.0	0.0	.	136	.	.	Atlas-SNP
HECA	51696	hgsc.bcm.edu	hg19	6	139487731	139487731	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HECA	NM_016217	exon2	c.G582T	p.V194V	TCAGGTGAAGCGG	.	65.0	4.0	162.0	0.0	.	45	.	.	Atlas-SNP
ADAT2	134637	hgsc.bcm.edu	hg19	6	143755117	143755117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADAT2	NM_182503	exon3	c.C203T	p.A68V	CGAGTAGCCTGAA	.	25.0	17.0	37.0	0.0	.	18	.	.	Atlas-SNP
SHPRH	257218	hgsc.bcm.edu	hg19	6	146243830	146243830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SHPRH	NM_173082	exon19	c.C3700A	p.H1234N	GGAGGTGACAGAC	.	82.0	4.0	94.0	0.0	.	169	.	.	Atlas-SNP
NUP43	348995	hgsc.bcm.edu	hg19	6	150067096	150067096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	NUP43,NS,carcinoma,0,1	NUP43	NM_198887	exon2	c.G223A	p.G75S	CATCACCATGGTG	.	44.0	2.0	80.0	0.0	.	32	.	.	Atlas-SNP
LRP11	84918	hgsc.bcm.edu	hg19	6	150147437	150147437	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LRP11	NM_032832	exon6	c.T1311C	p.G437G	TCCATCACCCTTT	.	99.0	5.0	168.0	0.0	.	27	.	.	Atlas-SNP
ESR1	2099	hgsc.bcm.edu	hg19	6	152382169	152382169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ESR1	NM_000125	exon6	c.A1279G	p.M427V	TTCGACATGCTGC	.	74.0	4.0	147.0	0.0	.	94	.	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152457873	152457873	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SYNE1	NM_182961	exon141	c.C25539T	p.D8513D	CTTGCTGTCAGCC	.	82.0	5.0	155.0	0.0	.	3227	.	.	Atlas-SNP
SYNE1	23345	hgsc.bcm.edu	hg19	6	152577846	152577846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	SYNE1_ENST00000423061,rectum,carcinoma,0,5	SYNE1	NM_182961	exon102	c.G19027A	p.V6343M	TTGGCACGTCCCC	.	46.0	2.0	92.0	0.0	.	3227	.	.	Atlas-SNP
SYNJ2	8871	hgsc.bcm.edu	hg19	6	158449995	158449995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SYNJ2	NM_003898	exon3	c.A422G	p.D141G	GCTTTGACCTGAC	.	61.0	5.0	114.0	0.0	.	111	.	.	Atlas-SNP
IGF2R	3482	hgsc.bcm.edu	hg19	6	160491044	160491044	+	Missense_Mutation	SNP	G	G	T	rs368697729	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IGF2R	NM_000876	exon31	c.G4397T	p.R1466L	GGATTCGGAAAAA	.	95.0	4.0	175.0	0.0	.	251	.	.	Atlas-SNP
LPA	4018	hgsc.bcm.edu	hg19	6	160978594	160978594	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LPA	NM_005577	exon30	c.C4641A	p.T1547T	GTTCTCGGTCAGG	.	100.0	4.0	173.0	0.0	.	237	.	.	Atlas-SNP
RPS6KA2	6196	hgsc.bcm.edu	hg19	6	166912091	166912091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RPS6KA2	NM_001006932	exon9	c.T676C	p.S226P	AGAAGGAGTACGC	.	85.0	4.0	144.0	0.0	.	212	.	.	Atlas-SNP
C6orf70	55780	hgsc.bcm.edu	hg19	6	170154032	170154032	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C6orf70	NM_018341	exon2	c.C79T	p.Q27X	GGGTTTCAACTCA	.	62.0	4.0	124.0	0.0	.	63	.	.	Atlas-SNP
PRKAR1B	5575	hgsc.bcm.edu	hg19	7	635799	635799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PRKAR1B	NM_001164760	exon7	c.A692G	p.Y231C	CGCCGGTAGCTGT	.	121.0	5.0	176.0	0.0	.	32	.	.	Atlas-SNP
SUN1	23353	hgsc.bcm.edu	hg19	7	881715	881715	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SUN1	NM_001171945	exon5	c.T462C	p.P154P	GCCTCCTGTATTG	.	69.0	4.0	111.0	0.0	.	157	.	.	Atlas-SNP
CHST12	55501	hgsc.bcm.edu	hg19	7	2472863	2472863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CHST12	NM_018641	exon2	c.C589A	p.R197S	CCCTACCGCGACC	.	94.0	4.0	145.0	0.0	.	39	.	.	Atlas-SNP
LFNG	3955	hgsc.bcm.edu	hg19	7	2552813	2552813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LFNG	NM_001166355	exon2	c.A70G	p.S24G	GCATGGAGCAAAT	.	98.0	4.0	140.0	0.0	.	57	.	.	Atlas-SNP
TNRC18	84629	hgsc.bcm.edu	hg19	7	5391469	5391469	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TNRC18	NM_001080495	exon17	c.G5451T	p.S1817S	TTCCTCCGAAGAG	.	99.0	4.0	163.0	0.0	.	311	.	.	Atlas-SNP
TNRC18	84629	hgsc.bcm.edu	hg19	7	5396822	5396822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TNRC18	NM_001080495	exon16	c.A4919G	p.D1640G	AACTTGTCCTGCT	.	199.0	9.0	212.0	0.0	.	311	.	.	Atlas-SNP
EIF2AK1	27102	hgsc.bcm.edu	hg19	7	6078226	6078226	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EIF2AK1	NM_014413	exon10	c.A1196G	p.N399S	CGCTTGTTTCTCT	.	86.0	4.0	84.0	0.0	.	76	.	.	Atlas-SNP
COL28A1	340267	hgsc.bcm.edu	hg19	7	7572478	7572478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COL28A1	NM_001037763	exon2	c.T29C	p.L10P	AGCAGGAGATAGA	.	81.0	4.0	81.0	0.0	.	113	.	.	Atlas-SNP
SCIN	85477	hgsc.bcm.edu	hg19	7	12662452	12662452	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SCIN	NM_001112706	exon5	c.A693G	p.P231P	GCTTCCAGATGGA	.	89.0	4.0	83.0	0.0	.	105	.	.	Atlas-SNP
KLHL7	55975	hgsc.bcm.edu	hg19	7	23180386	23180386	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	KLHL7_ENST00000339077,NS,carcinoma,0,4	KLHL7	NM_001031710	exon5	c.443-2A>G	.	GTGTTTAGGTATA	.	70.0	3.0	77.0	0.0	.	102	.	.	Atlas-SNP
HIBADH	11112	hgsc.bcm.edu	hg19	7	27672052	27672052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HIBADH	NM_152740	exon3	c.C265A	p.P89T	CTGCTGGGGAAGA	.	76.0	4.0	86.0	0.0	.	28	.	.	Atlas-SNP
TAX1BP1	8887	hgsc.bcm.edu	hg19	7	27832797	27832797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TAX1BP1	NM_006024	exon10	c.T1376C	p.L459P	AAAGGCTCCAAAA	.	122.0	5.0	142.0	0.0	.	71	.	.	Atlas-SNP
ADCYAP1R1	117	hgsc.bcm.edu	hg19	7	31125006	31125006	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADCYAP1R1	NM_001118	exon9	c.A618G	p.K206K	CATCAAAGACTGG	.	39.0	4.0	39.0	0.0	.	78	.	.	Atlas-SNP
FKBP9	11328	hgsc.bcm.edu	hg19	7	33028263	33028263	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FKBP9	NM_007270	exon6	c.A1038G	p.R346R	AGGAAGAGGTGAG	.	70.0	4.0	106.0	0.0	.	335	.	.	Atlas-SNP
NT5C3A	0	hgsc.bcm.edu	hg19	7	33057200	33057200	+	Missense_Mutation	SNP	T	T	C	rs186325627	bycluster;by1000genomes;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001002010	exon7	c.A559G	p.N187D	AGAAATTCTCATA	.	99.0	4.0	124.0	0.0	.	.	.	T|0.999;G|0.001	Atlas-SNP
AOAH	313	hgsc.bcm.edu	hg19	7	36763688	36763688	+	Silent	SNP	C	C	A	rs2228411	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	AOAH,NS,carcinoma,0,2	AOAH	NM_001177507	exon1	c.G66T	p.S22S	AGAGGCCGAGGAC	.	70.0	3.0	79.0	0.0	.	79	.	C|0.590;T|0.410	Atlas-SNP
VPS41	27072	hgsc.bcm.edu	hg19	7	38781711	38781711	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VPS41	NM_014396	exon25	c.T2133C	p.T711T	CAAGCCAGTAATA	.	96.0	4.0	135.0	0.0	.	102	.	.	Atlas-SNP
STK17A	9263	hgsc.bcm.edu	hg19	7	43663335	43663335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STK17A	NM_004760	exon6	c.G768T	p.M256I	TGTCATGCTTACA	.	82.0	5.0	81.0	0.0	.	31	.	.	Atlas-SNP
DBNL	28988	hgsc.bcm.edu	hg19	7	44098959	44098959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DBNL	NM_001122956	exon10	c.T869C	p.L290P	GCAAGCTGAGGAG	.	58.0	4.0	86.0	0.0	.	26	.	.	Atlas-SNP
OGDH	4967	hgsc.bcm.edu	hg19	7	44687303	44687303	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OGDH	NM_002541	exon4	c.T462C	p.D154D	TTTGGATGCTGAT	.	94.0	4.0	96.0	0.0	.	145	.	.	Atlas-SNP
ZNF727	442319	hgsc.bcm.edu	hg19	7	63538877	63538877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF727	NM_001159522	exon4	c.A1450G	p.N484D	GCAAAGAATGTGG	.	84.0	4.0	104.0	0.0	.	35	.	.	Atlas-SNP
STX1A	6804	hgsc.bcm.edu	hg19	7	73119552	73119552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STX1A	NM_004603	exon4	c.A211G	p.T71A	CCTTCGTCTCTGG	.	112.0	5.0	171.0	0.0	.	16	.	.	Atlas-SNP
HIP1	3092	hgsc.bcm.edu	hg19	7	75186064	75186064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HIP1	NM_005338	exon17	c.A1633G	p.S545G	GTTGGCTTGTGGC	.	43.0	4.0	70.0	0.0	.	91	.	.	Atlas-SNP
FGL2	10875	hgsc.bcm.edu	hg19	7	76829024	76829024	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FGL2	NM_006682	exon1	c.A87G	p.E29E	TTTAATTTCCTCT	.	78.0	4.0	79.0	0.0	.	40	.	.	Atlas-SNP
SEMA3D	223117	hgsc.bcm.edu	hg19	7	84666257	84666257	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SEMA3D	NM_152754	exon10	c.A1139G	p.D380G	CGATGGTCTGCAC	.	120.0	5.0	157.0	0.0	.	177	.	.	Atlas-SNP
ABCB1	5243	hgsc.bcm.edu	hg19	7	87214929	87214929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ABCB1	NM_000927	exon5	c.G185T	p.G62V	CCAGCCCCATGGA	.	116.0	6.0	106.0	0.0	.	263	.	.	Atlas-SNP
HEPACAM2	253012	hgsc.bcm.edu	hg19	7	92825188	92825188	+	Nonsense_Mutation	SNP	C	C	A	rs145244580	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HEPACAM2	NM_001039372	exon8	c.G1228T	p.G410X	ATATTCCGAAGTC	.	79.0	4.0	70.0	0.0	.	132	.	C|0.998;T|0.002	Atlas-SNP
SMURF1	57154	hgsc.bcm.edu	hg19	7	98628253	98628253	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMURF1	NM_020429	exon19	c.A2228G	p.K743R	AGCAGCTTCTCGT	.	74.0	5.0	96.0	0.0	.	58	.	.	Atlas-SNP
AP4M1	9179	hgsc.bcm.edu	hg19	7	99703069	99703069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AP4M1	NM_004722	exon11	c.T836C	p.L279P	CTCAGCTGACTGT	.	90.0	4.0	117.0	0.0	.	39	.	.	Atlas-SNP
TFR2	7036	hgsc.bcm.edu	hg19	7	100225214	100225214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TFR2	NM_003227	exon15	c.T1753C	p.F585L	AGGAGAACTCGAC	.	65.0	4.0	64.0	0.0	.	53	.	.	Atlas-SNP
GNB2	2783	hgsc.bcm.edu	hg19	7	100275432	100275432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GNB2	NM_005273	exon7	c.A488G	p.D163G	CTGGGGATACCAC	.	93.0	4.0	105.0	0.0	.	29	.	.	Atlas-SNP
ACHE	43	hgsc.bcm.edu	hg19	7	100487872	100487872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ACHE	NM_000665	exon5	c.A1808G	p.D603G	TAGTGGTCGAACT	.	141.0	6.0	207.0	0.0	.	80	.	.	Atlas-SNP
CUX1	1523	hgsc.bcm.edu	hg19	7	101840082	101840082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CUX1	NM_001202543	exon15	c.C1424A	p.S475Y	GCTCATCCCTGGC	.	138.0	44.0	174.0	0.0	.	253	.	.	Atlas-SNP
NRCAM	4897	hgsc.bcm.edu	hg19	7	107807398	107807398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NRCAM	NM_001037132	exon27	c.T3434C	p.V1145A	GAACTCACAAAAC	.	86.0	4.0	111.0	0.0	.	267	.	.	Atlas-SNP
PTPRZ1	5803	hgsc.bcm.edu	hg19	7	121679517	121679517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PTPRZ1	NM_002851	exon20	c.G5512A	p.D1838N	AAATGTGATCAGT	.	53.0	4.0	39.0	0.0	.	605	.	.	Atlas-SNP
FLNC	2318	hgsc.bcm.edu	hg19	7	128494663	128494663	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FLNC	NM_001458	exon41	c.G6924A	p.P2308P	GGGGCCGCTGGGT	.	107.0	5.0	160.0	0.0	.	339	.	.	Atlas-SNP
KIAA1147	57189	hgsc.bcm.edu	hg19	7	141362629	141362629	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA1147	NM_001080392	exon9	c.C1195A	p.R399R	ATATCCGGTTGTT	.	95.0	4.0	117.0	0.0	.	32	.	.	Atlas-SNP
TRPV6	55503	hgsc.bcm.edu	hg19	7	142569466	142569466	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TRPV6	NM_018646	exon15	c.G2172A	p.Q724Q	TCAGATCTGATAT	.	91.0	5.0	126.0	0.0	.	108	.	.	Atlas-SNP
CUL1	8454	hgsc.bcm.edu	hg19	7	148451110	148451110	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CUL1	NM_003592	exon3	c.A183G	p.Q61Q	AAACCAAGCACGA	.	93.0	5.0	100.0	0.0	.	80	.	.	Atlas-SNP
ZNF862	643641	hgsc.bcm.edu	hg19	7	149545056	149545056	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF862	NM_001099220	exon4	c.T474C	p.A158A	GACGGCTCTGTTC	.	119.0	6.0	128.0	0.0	.	97	.	.	Atlas-SNP
GIMAP1	170575	hgsc.bcm.edu	hg19	7	150417814	150417814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	GIMAP1,NS,carcinoma,0,1	GIMAP1	NM_130759	exon3	c.G722A	p.R241Q	GGCTCCGGCGGGT	.	57.0	6.0	65.0	0.0	.	61	.	.	Atlas-SNP
ABP1	26	hgsc.bcm.edu	hg19	7	150553813	150553813	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ABP1	NM_001091	exon2	c.T255C	p.F85F	GAGGTTTCTGGAT	.	92.0	4.0	121.0	0.0	.	92	.	.	Atlas-SNP
NOS3	4846	hgsc.bcm.edu	hg19	7	150707785	150707785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NOS3	NM_000603	exon22	c.T2786C	p.L929P	TGCTCCTCACCCA	.	95.0	4.0	133.0	0.0	.	131	.	.	Atlas-SNP
NCAPG2	54892	hgsc.bcm.edu	hg19	7	158472756	158472756	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NCAPG2	NM_017760	exon11	c.T1042C	p.S348P	CATTTGATCGAAC	.	120.0	5.0	146.0	0.0	.	80	.	.	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	hg19	8	2823315	2823315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CSMD1	NM_033225	exon59	c.A9262G	p.S3088G	GTTTGCTCGGATT	.	75.0	4.0	145.0	0.0	.	1469	.	.	Atlas-SNP
SLC7A2	6542	hgsc.bcm.edu	hg19	8	17422622	17422622	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC7A2	NM_001164771	exon12	c.T2064C	p.P688P	TTCACCTTTCATA	.	87.0	4.0	169.0	0.0	.	157	.	.	Atlas-SNP
PCM1	5108	hgsc.bcm.edu	hg19	8	17867212	17867212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PCM1	NM_006197	exon31	c.A5119G	p.K1707E	AAAAGGAAAATAG	.	67.0	4.0	138.0	0.0	.	120	.	.	Atlas-SNP
PCM1	5108	hgsc.bcm.edu	hg19	8	17868140	17868140	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PCM1	NM_006197	exon32	c.A5183G	p.H1728R	AAGATCATGGCTC	.	71.0	4.0	156.0	0.0	.	120	.	.	Atlas-SNP
LGI3	203190	hgsc.bcm.edu	hg19	8	22012911	22012911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LGI3	NM_139278	exon2	c.A272G	p.Q91R	AAGAACTGCAGCA	.	32.0	4.0	113.0	0.0	.	44	.	.	Atlas-SNP
C8orf58	541565	hgsc.bcm.edu	hg19	8	22458617	22458617	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C8orf58	NM_001013842	exon2	c.A263G	p.Q88R	TTTCTCAGGACTC	.	36.0	4.0	93.0	0.0	.	17	.	.	Atlas-SNP
TNFRSF10D	8793	hgsc.bcm.edu	hg19	8	22995463	22995463	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TNFRSF10D	NM_003840	exon9	c.A1081G	p.T361A	GAATTGTTTCCTT	.	98.0	4.0	195.0	0.0	.	21	.	.	Atlas-SNP
SCARA3	51435	hgsc.bcm.edu	hg19	8	27509080	27509080	+	Silent	SNP	G	G	T	rs371890046	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SCARA3	NM_182826	exon3	c.G162T	p.S54S	CACATCGGTGCGG	.	79.0	4.0	251.0	0.0	.	93	.	.	Atlas-SNP
CCDC25	55246	hgsc.bcm.edu	hg19	8	27605739	27605739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	CCDC25,NS,carcinoma,0,1	CCDC25	NM_018246	exon7	c.A406G	p.T136A	CTTTGGTCTTTTC	.	110.0	5.0	249.0	0.0	.	14	.	.	Atlas-SNP
FZD3	7976	hgsc.bcm.edu	hg19	8	28385289	28385289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FZD3	NM_017412	exon5	c.A1012G	p.I338V	TGGGGCATCCCCG	.	59.0	4.0	133.0	0.0	.	65	.	.	Atlas-SNP
FUT10	84750	hgsc.bcm.edu	hg19	8	33230192	33230192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FUT10	NM_032664	exon5	c.A1343G	p.E448G	GATTGTTCAAAGC	.	94.0	4.0	174.0	0.0	.	62	.	.	Atlas-SNP
KCNU1	157855	hgsc.bcm.edu	hg19	8	36693822	36693822	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	KCNU1_ENST00000399881,rectum,carcinoma,0,2	KCNU1	NM_001031836	exon13	c.C1304T	p.S435F	TGCTCTCTATCAA	.	35.0	2.0	89.0	0.0	.	359	.	.	Atlas-SNP
HOOK3	84376	hgsc.bcm.edu	hg19	8	42819473	42819473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HOOK3	NM_032410	exon9	c.A635G	p.E212G	AGGAAGAGAAAAG	.	80.0	5.0	86.0	0.0	.	71	.	.	Atlas-SNP
PXDNL	137902	hgsc.bcm.edu	hg19	8	52321594	52321594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	PXDNL_ENST00000356297,colon,carcinoma,0,2	PXDNL	NM_144651	exon17	c.C2590T	p.R864C	TGGAGCGCGCGAA	.	100.0	6.0	87.0	0.0	.	414	.	.	Atlas-SNP
CNBD1	168975	hgsc.bcm.edu	hg19	8	88218349	88218349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CNBD1	NM_173538	exon5	c.G560T	p.W187L	AAACCTGGTTGAA	.	98.0	4.0	72.0	0.0	.	206	.	.	Atlas-SNP
RIPK2	8767	hgsc.bcm.edu	hg19	8	90782012	90782012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	RIPK2,NS,carcinoma,0,1	RIPK2	NM_003821	exon4	c.G496T	p.G166C	GATTTTGGTTTAT	.	75.0	3.0	56.0	0.0	.	37	.	.	Atlas-SNP
CALB1	793	hgsc.bcm.edu	hg19	8	91072909	91072909	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CALB1	NM_004929	exon10	c.A620C	p.D207A	TTTTCATCTATGT	.	137.0	40.0	105.0	0.0	.	25	.	.	Atlas-SNP
RNF139	11236	hgsc.bcm.edu	hg19	8	125487462	125487462	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RNF139	NM_007218	exon1	c.T112C	p.F38L	GCCATCTTCAACT	.	58.0	6.0	66.0	0.0	.	57	.	.	Atlas-SNP
KIAA0196	9897	hgsc.bcm.edu	hg19	8	126062907	126062907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA0196	NM_014846	exon18	c.G2098A	p.V700M	GATCCACCTAAGT	.	87.0	4.0	77.0	0.0	.	90	.	.	Atlas-SNP
ASAP1	50807	hgsc.bcm.edu	hg19	8	131130888	131130888	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ASAP1	NM_018482	exon19	c.T1641C	p.Y547Y	ATCTACATACTTT	.	263.0	72.0	177.0	0.0	.	133	.	.	Atlas-SNP
ADCY8	114	hgsc.bcm.edu	hg19	8	131795974	131795974	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	ADCY8,NS,carcinoma,0,1	ADCY8	NM_001115	exon17	c.C3231A	p.I1077I	CTTGTTGATCTCC	.	110.0	6.0	115.0	0.0	.	291	.	.	Atlas-SNP
FAM83H	286077	hgsc.bcm.edu	hg19	8	144812417	144812417	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FAM83H	NM_198488	exon2	c.T336C	p.P112P	GGTCAGAGGCCAG	.	72.0	4.0	84.0	0.0	.	68	.	.	Atlas-SNP
SCRIB	23513	hgsc.bcm.edu	hg19	8	144891811	144891811	+	Silent	SNP	G	G	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SCRIB	NM_015356	exon14	c.C1608G	p.P536P	GCCCTCGGGCTCA	.	93.0	4.0	90.0	0.0	.	192	.	.	Atlas-SNP
PLEC	5339	hgsc.bcm.edu	hg19	8	144990726	144990726	+	Silent	SNP	G	G	T	rs369202116	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLEC	NM_201380	exon32	c.C13674A	p.T4558T	CTGTGCGGTGCGG	.	80.0	4.0	69.0	0.0	.	1144	.	.	Atlas-SNP
PLEC	5339	hgsc.bcm.edu	hg19	8	144991010	144991010	+	Missense_Mutation	SNP	C	C	A	rs368027812	bycluster;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLEC	NM_201380	exon32	c.G13390T	p.G4464C	GCTCACCGGTGCT	.	138.0	7.0	155.0	0.0	.	1144	.	.	Atlas-SNP
RECQL4	9401	hgsc.bcm.edu	hg19	8	145740718	145740718	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RECQL4	NM_004260	exon7	c.A1382T	p.Q461L	GCCAACTGCCCTG	.	166.0	10.0	154.0	0.0	.	75	.	.	Atlas-SNP
LRRC24	441381	hgsc.bcm.edu	hg19	8	145749598	145749598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LRRC24	NM_001024678	exon4	c.G503A	p.G168E	GACAGCCCCGCTA	.	66.0	4.0	76.0	0.0	.	11	.	.	Atlas-SNP
KCNV2	169522	hgsc.bcm.edu	hg19	9	2729648	2729648	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KCNV2	NM_133497	exon2	c.T1559G	p.F520C	TGAACTTCATGCA	.	113.0	11.0	187.0	0.0	.	72	.	.	Atlas-SNP
MPDZ	8777	hgsc.bcm.edu	hg19	9	13193255	13193255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	MPDZ_ENST00000541718,NS,carcinoma,0,2	MPDZ	NM_003829	exon14	c.A1714G	p.T572A	CCACTGTCGCTTC	.	60.0	4.0	78.0	0.0	.	324	.	.	Atlas-SNP
ADAMTSL1	92949	hgsc.bcm.edu	hg19	9	18829938	18829938	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADAMTSL1	NM_001040272	exon23	c.A4212G	p.T1404T	GGGAACACAGCTG	.	96.0	4.0	139.0	0.0	.	306	.	.	Atlas-SNP
DENND4C	55667	hgsc.bcm.edu	hg19	9	19346681	19346681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DENND4C	NM_017925	exon22	c.A3767G	p.H1256R	AATTACACAGAGA	.	103.0	5.0	146.0	0.0	.	120	.	.	Atlas-SNP
UBAP2	55833	hgsc.bcm.edu	hg19	9	33996317	33996317	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UBAP2	NM_018449	exon4	c.A192G	p.T64T	TTTCCCTGTCACT	.	119.0	5.0	168.0	0.0	.	82	.	.	Atlas-SNP
VCP	7415	hgsc.bcm.edu	hg19	9	35060881	35060881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VCP	NM_007126	exon12	c.A1399G	p.T467A	CCACGGTTTCCCG	.	119.0	5.0	145.0	0.0	.	64	.	.	Atlas-SNP
SIT1	27240	hgsc.bcm.edu	hg19	9	35650500	35650500	+	Missense_Mutation	SNP	G	G	A	rs199515871	bycluster	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SIT1	NM_014450	exon2	c.C235T	p.R79C	CCCACCGTCCCTG	.	99.0	4.0	199.0	0.0	.	15	.	.	Atlas-SNP
SIT1	27240	hgsc.bcm.edu	hg19	9	35650501	35650501	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SIT1	NM_014450	exon2	c.A234G	p.G78G	CCACCGTCCCTGC	.	98.0	4.0	195.0	0.0	.	15	.	.	Atlas-SNP
TPM2	7169	hgsc.bcm.edu	hg19	9	35685445	35685445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TPM2	NM_213674	exon4	c.C478A	p.R160S	ATTTGCGGTCTGA	.	95.0	4.0	103.0	0.0	.	64	.	.	Atlas-SNP
RGP1	9827	hgsc.bcm.edu	hg19	9	35752822	35752822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	RGP1_ENST00000378078,colon,carcinoma,0,2	RGP1	NM_001080496	exon9	c.T1127C	p.L376P	CCACCCTGGCCTC	.	91.0	6.0	126.0	0.0	.	60	.	.	Atlas-SNP
TJP2	9414	hgsc.bcm.edu	hg19	9	71845110	71845110	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TJP2	NM_001170416	exon11	c.G1726T	p.E576X	TCGGCGGAGCAGG	.	83.0	4.0	96.0	0.0	.	120	.	.	Atlas-SNP
TLE4	7091	hgsc.bcm.edu	hg19	9	82337475	82337475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TLE4	NM_007005	exon18	c.T2096C	p.L699P	TACATCTTCATGA	.	125.0	5.0	207.0	0.0	.	187	.	.	Atlas-SNP
SPATA31D1	389763	hgsc.bcm.edu	hg19	9	84608910	84608910	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001001670	exon4	c.A3525G	p.K1175K	TGTGAAAGCAAGC	.	82.0	4.0	125.0	0.0	.	.	.	.	Atlas-SNP
IARS	3376	hgsc.bcm.edu	hg19	9	95033301	95033301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IARS	NM_013417	exon12	c.A1171G	p.T391A	AGGTGGTGGCAAC	.	65.0	4.0	96.0	0.0	.	74	.	.	Atlas-SNP
FBP2	8789	hgsc.bcm.edu	hg19	9	97346891	97346891	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FBP2	NM_003837	exon3	c.T394C	p.S132P	CGATGGAGGCCAG	.	115.0	5.0	151.0	0.0	.	26	.	.	Atlas-SNP
FKTN	2218	hgsc.bcm.edu	hg19	9	108363469	108363469	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FKTN	NM_006731	exon4	c.T209C	p.V70A	AAAATGTACCAGT	.	91.0	5.0	108.0	0.0	.	47	.	.	Atlas-SNP
C9orf84	158401	hgsc.bcm.edu	hg19	9	114454021	114454021	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C9orf84	NM_173521	exon25	c.T4044C	p.S1348S	TTTTGAACTTTCA	.	90.0	4.0	118.0	0.0	.	207	.	.	Atlas-SNP
TTC16	158248	hgsc.bcm.edu	hg19	9	130482418	130482418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TTC16	NM_144965	exon5	c.C488T	p.A163V	ATGCTGCTGAGCT	.	96.0	5.0	152.0	0.0	.	55	.	.	Atlas-SNP
ZER1	10444	hgsc.bcm.edu	hg19	9	131515870	131515870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZER1	NM_006336	exon4	c.G319A	p.E107K	ACAGCTCCACCAG	.	62.0	4.0	96.0	0.0	.	49	.	.	Atlas-SNP
PHYHD1	254295	hgsc.bcm.edu	hg19	9	131702690	131702690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PHYHD1	NM_001100876	exon10	c.T500C	p.L167P	AGCCCCTGGGCCG	.	87.0	4.0	107.0	0.0	.	29	.	.	Atlas-SNP
PRRC2B	84726	hgsc.bcm.edu	hg19	9	134353913	134353913	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PRRC2B	NM_013318	exon17	c.T4665C	p.G1555G	GGTGGGTTCTATG	.	96.0	4.0	154.0	0.0	.	266	.	.	Atlas-SNP
GBGT1	26301	hgsc.bcm.edu	hg19	9	136029497	136029497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GBGT1	NM_021996	exon7	c.C511A	p.Q171K	GACCCTGGATGGG	.	81.0	4.0	90.0	0.0	.	25	.	.	Atlas-SNP
COL5A1	1289	hgsc.bcm.edu	hg19	9	137716488	137716488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COL5A1	NM_000093	exon62	c.T4741C	p.S1581P	CAGGCATCCAGGA	.	96.0	6.0	168.0	0.0	.	323	.	.	Atlas-SNP
ABCA2	20	hgsc.bcm.edu	hg19	9	139910924	139910924	+	Splice_Site	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ABCA2	NM_212533	exon22	c.3014-1G>T	.	TCTCCTCTGCACC	.	95.0	4.0	144.0	0.0	.	113	.	.	Atlas-SNP
RNF208	727800	hgsc.bcm.edu	hg19	9	140115610	140115610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RNF208	NM_031297	exon1	c.T55C	p.S19P	GGCAGGACATGAG	.	104.0	5.0	146.0	0.0	.	11	.	.	Atlas-SNP
ADARB2	105	hgsc.bcm.edu	hg19	10	1229197	1229197	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADARB2	NM_018702	exon10	c.A2156G	p.K719R	CCAGCCTTCTGAA	.	125.0	5.0	176.0	0.0	.	95	.	.	Atlas-SNP
RBM17	84991	hgsc.bcm.edu	hg19	10	6143232	6143232	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RBM17	NM_032905	exon3	c.124-2A>G	.	GATTTTAGAGCCA	.	76.0	4.0	92.0	0.0	.	45	.	.	Atlas-SNP
NUDT5	11164	hgsc.bcm.edu	hg19	10	12215770	12215770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NUDT5	NM_014142	exon6	c.G332A	p.R111Q	AGCTCCCGGAGAG	.	125.0	5.0	149.0	0.0	.	10	.	.	Atlas-SNP
MCM10	55388	hgsc.bcm.edu	hg19	10	13212949	13212949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MCM10	NM_182751	exon3	c.C35T	p.T12I	TGCTGACCGCACT	.	121.0	5.0	138.0	0.0	.	76	.	.	Atlas-SNP
CUBN	8029	hgsc.bcm.edu	hg19	10	17157511	17157511	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CUBN	NM_001081	exon7	c.C679A	p.H227N	TGCCATGGACACA	.	92.0	4.0	91.0	0.0	.	515	.	.	Atlas-SNP
MYO3A	53904	hgsc.bcm.edu	hg19	10	26312957	26312957	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MYO3A	NM_017433	exon9	c.A738G	p.P246P	GAATCCACCCCCA	.	124.0	5.0	163.0	0.0	.	371	.	.	Atlas-SNP
ABI1	10006	hgsc.bcm.edu	hg19	10	27044647	27044647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ABI1	NM_005470	exon10	c.C1102A	p.P368T	GCATAGGGGGAGG	.	84.0	4.0	85.0	0.0	.	38	.	.	Atlas-SNP
YME1L1	10730	hgsc.bcm.edu	hg19	10	27409405	27409405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	YME1L1	NM_139312	exon14	c.A1541G	p.E514G	AAAATTTCTGTTC	.	88.0	4.0	117.0	0.0	.	71	.	.	Atlas-SNP
SVIL	6840	hgsc.bcm.edu	hg19	10	29820188	29820188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SVIL	NM_021738	exon10	c.T2039C	p.V680A	CCATCGACAGTTG	.	79.0	4.0	78.0	0.0	.	226	.	.	Atlas-SNP
ZNF33A	7581	hgsc.bcm.edu	hg19	10	38344489	38344489	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF33A	NM_006954	exon5	c.T1437C	p.S479S	CTTTAGTGAAAAG	.	97.0	4.0	91.0	0.0	.	103	.	.	Atlas-SNP
ARHGAP22	58504	hgsc.bcm.edu	hg19	10	49667827	49667827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ARHGAP22	NM_001256024	exon5	c.G607A	p.G203R	TGAGCCCGCGCTC	.	97.0	4.0	120.0	0.0	.	94	.	.	Atlas-SNP
WDFY4	57705	hgsc.bcm.edu	hg19	10	49939422	49939422	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WDFY4	NM_020945	exon9	c.T1397C	p.I466T	ATGAGATCCTGCG	.	69.0	5.0	68.0	0.0	.	205	.	.	Atlas-SNP
JMJD1C	221037	hgsc.bcm.edu	hg19	10	64946064	64946064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	JMJD1C	NM_032776	exon19	c.A6650G	p.D2217G	TGGTGGTCTCCAA	.	94.0	4.0	132.0	0.0	.	347	.	.	Atlas-SNP
LRRTM3	347731	hgsc.bcm.edu	hg19	10	68857536	68857536	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LRRTM3	NM_178011	exon3	c.T1728A	p.H576Q	TGACCATAAACAG	.	91.0	4.0	93.0	0.0	.	241	.	.	Atlas-SNP
MYPN	84665	hgsc.bcm.edu	hg19	10	69925542	69925542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MYPN	NM_032578	exon9	c.A1567G	p.T523A	TACGGCACAGTGT	.	76.0	4.0	85.0	0.0	.	189	.	.	Atlas-SNP
DDX21	9188	hgsc.bcm.edu	hg19	10	70723119	70723119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DDX21	NM_004728	exon4	c.T680C	p.I227T	ACTTAATTGCACA	.	100.0	4.0	95.0	0.0	.	57	.	.	Atlas-SNP
CDH23	64072	hgsc.bcm.edu	hg19	10	73375297	73375297	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CDH23	NM_052836	exon10	c.G869T	p.S290I	ACATCAGCGGAGT	.	79.0	4.0	130.0	0.0	.	365	.	.	Atlas-SNP
C10orf54	64115	hgsc.bcm.edu	hg19	10	73511594	73511594	+	Silent	SNP	G	G	T	rs201880754	by1000genomes;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C10orf54	NM_022153	exon6	c.C729A	p.P243P	AAAGCCGGGGTTT	.	110.0	5.0	125.0	0.0	.	29	.	G|1.000;A|0.000	Atlas-SNP
MCU	90550	hgsc.bcm.edu	hg19	10	74631338	74631338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MCU	NM_138357	exon6	c.G861T	p.Q287H	ACGCCAGGTAAGA	.	82.0	4.0	52.0	0.0	.	29	.	.	Atlas-SNP
SEC24C	9632	hgsc.bcm.edu	hg19	10	75525917	75525917	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	SEC24C,NS,carcinoma,0,1	SEC24C	NM_198597	exon11	c.T1556C	p.L519P	CTGGTCTTGTTAG	.	50.0	3.0	57.0	0.0	.	86	.	.	Atlas-SNP
VCL	7414	hgsc.bcm.edu	hg19	10	75854142	75854142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VCL	NM_003373	exon11	c.C1466T	p.A489V	CCAAAGCAGCTGT	.	239.0	11.0	258.0	0.0	.	77	.	.	Atlas-SNP
KAT6B	23522	hgsc.bcm.edu	hg19	10	76788578	76788578	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_012330	exon18	c.T3996C	p.P1332P	TGCCCCTGTAAGT	.	103.0	5.0	114.0	0.0	.	.	.	.	Atlas-SNP
GRID1	2894	hgsc.bcm.edu	hg19	10	87628897	87628897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GRID1	NM_017551	exon6	c.C821A	p.A274D	CCAAGGGCACTAT	.	107.0	5.0	146.0	0.0	.	204	.	.	Atlas-SNP
PPP1R3C	5507	hgsc.bcm.edu	hg19	10	93390552	93390552	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PPP1R3C	NM_005398	exon2	c.G86T	p.C29F	GCCAAGCAAAGCC	.	79.0	4.0	96.0	0.0	.	30	.	.	Atlas-SNP
CEP55	55165	hgsc.bcm.edu	hg19	10	95279490	95279490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CEP55	NM_018131	exon8	c.G1117A	p.V373M	CAACATGTGCAGC	.	84.0	4.0	93.0	0.0	.	35	.	.	Atlas-SNP
PLCE1	51196	hgsc.bcm.edu	hg19	10	96076352	96076352	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	PLCE1_ENST00000371375,NS,carcinoma,0,3	PLCE1	NM_016341	exon29	c.T6181C	p.L2061L	TATTTTTTGATGG	.	38.0	2.0	56.0	0.0	.	543	.	.	Atlas-SNP
MMS19	64210	hgsc.bcm.edu	hg19	10	99220678	99220678	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MMS19	NM_022362	exon24	c.A2398G	p.T800A	GAAGAGTGAAGGC	.	98.0	4.0	86.0	0.0	.	36	.	.	Atlas-SNP
ERLIN1	10613	hgsc.bcm.edu	hg19	10	101937926	101937926	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_006459	exon4	c.C268A	p.R90R	CTATTCGGTCAAT	.	72.0	4.0	62.0	0.0	.	.	.	.	Atlas-SNP
ELOVL3	83401	hgsc.bcm.edu	hg19	10	103988767	103988767	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ELOVL3	NM_152310	exon4	c.A571T	p.N191Y	GCTGCCAACGTGA	.	122.0	5.0	149.0	0.0	.	39	.	.	Atlas-SNP
SFXN2	118980	hgsc.bcm.edu	hg19	10	104486433	104486433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SFXN2	NM_178858	exon2	c.C40A	p.R14S	GCCCCCCGTTGGG	.	64.0	4.0	99.0	0.0	.	40	.	.	Atlas-SNP
PDCD11	22984	hgsc.bcm.edu	hg19	10	105184772	105184772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PDCD11	NM_014976	exon20	c.T2795C	p.V932A	CGATTGTGCAGCA	.	77.0	4.0	91.0	0.0	.	160	.	.	Atlas-SNP
SLK	9748	hgsc.bcm.edu	hg19	10	105762224	105762224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLK	NM_014720	exon9	c.C1288T	p.L430F	CCCAAGCTTGAAA	.	97.0	4.0	104.0	0.0	.	107	.	.	Atlas-SNP
KIAA1598	57698	hgsc.bcm.edu	hg19	10	118719735	118719735	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA1598	NM_001258299	exon4	c.A179G	p.H60R	ACCATGTGAGAAA	.	76.0	4.0	78.0	0.0	.	74	.	.	Atlas-SNP
SLC18A2	6571	hgsc.bcm.edu	hg19	10	119003656	119003656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC18A2	NM_003054	exon3	c.A296G	p.H99R	CACTTCATCAGAC	.	83.0	4.0	92.0	0.0	.	58	.	.	Atlas-SNP
C10orf90	118611	hgsc.bcm.edu	hg19	10	128114440	128114440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	C10orf90,NS,carcinoma,0,1	C10orf90	NM_001004298	exon9	c.C2093A	p.A698E	TAGACCGCATTCC	.	74.0	4.0	80.0	0.0	.	121	.	.	Atlas-SNP
ZNF511	118472	hgsc.bcm.edu	hg19	10	135123793	135123793	+	Splice_Site	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF511	NM_145806	exon4	c.554+1G>A	.	CAGAAGGTAGGGA	.	44.0	16.0	34.0	0.0	.	17	.	.	Atlas-SNP
MTG1	92170	hgsc.bcm.edu	hg19	10	135215725	135215725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MTG1	NM_138384	exon8	c.A646G	p.T216A	GTGGAGACAGGCC	.	89.0	4.0	113.0	0.0	.	38	.	.	Atlas-SNP
B4GALNT4	338707	hgsc.bcm.edu	hg19	11	377213	377213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	B4GALNT4	NM_178537	exon14	c.G2090T	p.R697L	TGCTGCGCTCGGA	.	90.0	4.0	148.0	0.0	.	83	.	.	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	hg19	11	1092653	1092653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MUC2	NM_002457	exon30	c.C4472A	p.T1491K	CCACCACAACCAC	.	2125.0	392.0	3967.0	2.0	.	614	.	.	Atlas-SNP
OR52M1	119772	hgsc.bcm.edu	hg19	11	4566442	4566442	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OR52M1	NM_001004137	exon1	c.T22A	p.C8S	AATGTCTGCTCAG	.	125.0	6.0	139.0	0.0	.	53	.	.	Atlas-SNP
OR52I1	390037	hgsc.bcm.edu	hg19	11	4616131	4616131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	OR52I1,NS,carcinoma,0,1	OR52I1	NM_001005169	exon1	c.T863C	p.I288T	TGATCATCCCAGC	.	186.0	10.0	262.0	2.0	.	29	.	.	Atlas-SNP
OR51V1	283111	hgsc.bcm.edu	hg19	11	5221456	5221456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OR51V1	NM_001004760	exon1	c.G475T	p.G159C	TCCTACCTATTAT	.	88.0	4.0	89.0	0.0	.	77	.	.	Atlas-SNP
OR56B4	196335	hgsc.bcm.edu	hg19	11	6129433	6129433	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OR56B4	NM_001005181	exon1	c.T425C	p.V142A	CCATAGTCACTAA	.	97.0	4.0	167.0	0.0	.	50	.	.	Atlas-SNP
TRIM3	10612	hgsc.bcm.edu	hg19	11	6472512	6472512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TRIM3	NM_001248006	exon8	c.G1690A	p.G564S	ACTTGCCCTCAGG	.	53.0	4.0	85.0	0.0	.	67	.	.	Atlas-SNP
ARFIP2	23647	hgsc.bcm.edu	hg19	11	6501223	6501223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	ARFIP2,right_upper_lobe,carcinoma,0,1	ARFIP2	NM_012402	exon3	c.G175T	p.G59C	CATCACCAGAGCC	.	41.0	3.0	76.0	0.0	.	23	.	.	Atlas-SNP
DNHD1	144132	hgsc.bcm.edu	hg19	11	6561171	6561171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DNHD1	NM_144666	exon18	c.G3486T	p.W1162C	GTACTGGGAAGCG	.	87.0	4.0	122.0	0.0	.	198	.	.	Atlas-SNP
PPFIBP2	8495	hgsc.bcm.edu	hg19	11	7670813	7670813	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PPFIBP2	NM_003621	exon21	c.C2049G	p.I683M	CAGCATCAAATGT	.	199.0	67.0	303.0	0.0	.	87	.	.	Atlas-SNP
OVCH2	341277	hgsc.bcm.edu	hg19	11	7718054	7718054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OVCH2	NM_198185	exon10	c.C1099A	p.H367N	AACTGTGGTGACA	.	54.0	4.0	72.0	0.0	.	47	.	.	Atlas-SNP
SCUBE2	57758	hgsc.bcm.edu	hg19	11	9069079	9069079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	SCUBE2,NS,carcinoma,0,1	SCUBE2	NM_020974	exon16	c.G1826T	p.R609L	TCGGTTCGCTTTA	.	174.0	17.0	228.0	0.0	.	102	.	.	Atlas-SNP
INSC	387755	hgsc.bcm.edu	hg19	11	15247245	15247245	+	Silent	SNP	G	G	T	rs111784838	bycluster;by1000genomes;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	INSC	NM_001031853	exon9	c.G1182T	p.A394A	CTCTGCGGCCCTT	.	66.0	4.0	96.0	0.0	.	104	.	G|0.999;A|0.001	Atlas-SNP
INSC	387755	hgsc.bcm.edu	hg19	11	15262003	15262003	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	INSC	NM_001031853	exon12	c.T1545C	p.R515R	GTCCCGTCTCATC	.	111.0	5.0	165.0	0.0	.	104	.	.	Atlas-SNP
HPS5	11234	hgsc.bcm.edu	hg19	11	18317630	18317630	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	HPS5,NS,carcinoma,0,1	HPS5	NM_181507	exon13	c.A1550G	p.K517R	TCATTCTTATCTG	.	72.0	4.0	97.0	0.0	.	70	.	.	Atlas-SNP
TSG101	7251	hgsc.bcm.edu	hg19	11	18502150	18502150	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TSG101	NM_006292	exon10	c.G1116A	p.Q372Q	CCTCAGCTGGAAC	.	127.0	50.0	215.0	0.0	.	43	.	.	Atlas-SNP
SPTY2D1	144108	hgsc.bcm.edu	hg19	11	18655797	18655797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SPTY2D1	NM_194285	exon1	c.T8C	p.F3S	TCTCTGAAGTCCA	.	80.0	4.0	95.0	0.0	.	72	.	.	Atlas-SNP
IGSF22	283284	hgsc.bcm.edu	hg19	11	18735929	18735929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IGSF22	NM_173588	exon13	c.G1693T	p.G565C	CTGCACCCTGCTT	.	99.0	4.0	98.0	0.0	.	211	.	.	Atlas-SNP
PTPN5	84867	hgsc.bcm.edu	hg19	11	18754887	18754887	+	Silent	SNP	G	G	A	rs144666949		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PTPN5	NM_032781	exon11	c.C1113T	p.A371A	CTGAGTGGCGATG	.	86.0	27.0	95.0	0.0	.	163	.	G|1.000;A|0.000	Atlas-SNP
FBXO3	26273	hgsc.bcm.edu	hg19	11	33763518	33763518	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FBXO3	NM_012175	exon11	c.A1352G	p.E451G	CTCTCCTCTTCAT	.	78.0	4.0	113.0	0.0	.	37	.	.	Atlas-SNP
NAT10	55226	hgsc.bcm.edu	hg19	11	34152409	34152409	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NAT10	NM_024662	exon13	c.C1294A	p.R432S	CAGCTCCGTCAAC	.	94.0	5.0	100.0	0.0	.	78	.	.	Atlas-SNP
CD82	3732	hgsc.bcm.edu	hg19	11	44639811	44639811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CD82	NM_002231	exon8	c.G538T	p.G180W	GTCAAGGGGGAAG	.	91.0	4.0	115.0	0.0	.	27	.	.	Atlas-SNP
AMBRA1	55626	hgsc.bcm.edu	hg19	11	46569854	46569854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AMBRA1	NM_001267783	exon2	c.A77G	p.Q26R	AGCCGCTGAGCTC	.	97.0	5.0	160.0	0.0	.	201	.	.	Atlas-SNP
FNBP4	23360	hgsc.bcm.edu	hg19	11	47755663	47755663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FNBP4	NM_015308	exon10	c.G1600A	p.A534T	TATTTGCCAGTTC	.	74.0	4.0	73.0	0.0	.	99	.	.	Atlas-SNP
TRIM51	84767	hgsc.bcm.edu	hg19	11	55653258	55653258	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_032681	exon2	c.T354C	p.S118S	CAACTCTCAGGAG	.	96.0	5.0	158.0	0.0	.	.	.	.	Atlas-SNP
OR8J1	219477	hgsc.bcm.edu	hg19	11	56128618	56128618	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OR8J1	NM_001005205	exon1	c.A896G	p.K299R	ATGTGAAGACTGC	.	86.0	4.0	119.0	0.0	.	87	.	.	Atlas-SNP
OR5M11	219487	hgsc.bcm.edu	hg19	11	56310189	56310189	+	Missense_Mutation	SNP	G	G	T	rs200285217	bycluster;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	OR5M11,caecum,carcinoma,0,2	OR5M11	NM_001005245	exon1	c.C545A	p.P182Q	ATGAGCGGCGGGT	.	100.0	4.0	146.0	0.0	.	60	.	.	Atlas-SNP
YPEL4	219539	hgsc.bcm.edu	hg19	11	57413535	57413535	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	YPEL4	NM_145008	exon5	c.T303C	p.A101A	CTCAAAAGCTTGC	.	79.0	5.0	93.0	0.0	.	5	.	.	Atlas-SNP
BTBD18	643376	hgsc.bcm.edu	hg19	11	57511709	57511709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BTBD18	NM_001145101	exon3	c.T2036C	p.V679A	TCCACCACATCAA	.	90.0	4.0	153.0	0.0	.	26	.	.	Atlas-SNP
MS4A4A	51338	hgsc.bcm.edu	hg19	11	60073590	60073590	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MS4A4A	NM_148975	exon6	c.G564A	p.V188V	CATGGTGCTCCTC	.	458.0	95.0	675.0	0.0	.	76	.	.	Atlas-SNP
MS4A8	83661	hgsc.bcm.edu	hg19	11	60476245	60476245	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_031457	exon5	c.C525A	p.A175A	TTACGCCTGGGGT	.	151.0	56.0	238.0	0.0	.	.	.	.	Atlas-SNP
PRPF19	27339	hgsc.bcm.edu	hg19	11	60670241	60670241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PRPF19	NM_014502	exon4	c.T359C	p.L120P	TTGGTGAGACGGG	.	97.0	4.0	121.0	0.0	.	62	.	.	Atlas-SNP
CD6	923	hgsc.bcm.edu	hg19	11	60785418	60785418	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CD6	NM_006725	exon11	c.A1770G	p.S590S	TTCTTCAGAGAGG	.	58.0	4.0	81.0	0.0	.	122	.	.	Atlas-SNP
AHNAK	79026	hgsc.bcm.edu	hg19	11	62300901	62300901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AHNAK	NM_001620	exon5	c.A988G	p.R330G	AAACCCTCAGCCC	.	76.0	4.0	106.0	0.0	.	532	.	.	Atlas-SNP
ZBTB3	79842	hgsc.bcm.edu	hg19	11	62520653	62520653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZBTB3	NM_024784	exon2	c.A634G	p.T212A	CTGATGTCTCAGC	.	94.0	4.0	93.0	0.0	.	47	.	.	Atlas-SNP
RCOR2	283248	hgsc.bcm.edu	hg19	11	63680389	63680389	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RCOR2	NM_173587	exon9	c.C922T	p.L308L	GGCGCAGGCTGCT	.	54.0	14.0	101.0	0.0	.	43	.	.	Atlas-SNP
RCOR2	283248	hgsc.bcm.edu	hg19	11	63680410	63680410	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RCOR2	NM_173587	exon9	c.A901G	p.M301V	GCTTCATGCTCTG	.	52.0	4.0	89.0	0.0	.	43	.	.	Atlas-SNP
TEX40	25858	hgsc.bcm.edu	hg19	11	64071271	64071271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001039496	exon4	c.G459T	p.M153I	ACTCATGGAGAAT	.	95.0	4.0	127.0	0.0	.	.	.	.	Atlas-SNP
SLC22A11	55867	hgsc.bcm.edu	hg19	11	64323631	64323631	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC22A11	NM_018484	exon1	c.C160T	p.L54L	CACATGCTGGACA	.	90.0	34.0	177.0	0.0	.	54	.	.	Atlas-SNP
NRXN2	9379	hgsc.bcm.edu	hg19	11	64436058	64436058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NRXN2	NM_015080	exon8	c.G1216T	p.G406W	GGATCCCGTCCAC	.	81.0	4.0	123.0	0.0	.	247	.	.	Atlas-SNP
ATG2A	23130	hgsc.bcm.edu	hg19	11	64681337	64681337	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ATG2A	NM_015104	exon4	c.G546A	p.P182P	ATCACCCGGAGAG	.	79.0	4.0	143.0	0.0	.	133	.	.	Atlas-SNP
CAPN1	823	hgsc.bcm.edu	hg19	11	64977828	64977828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CAPN1	NM_001198869	exon20	c.T1964C	p.L655P	AGAAGCTGTACGA	.	108.0	5.0	116.0	0.0	.	44	.	.	Atlas-SNP
DPF2	5977	hgsc.bcm.edu	hg19	11	65113180	65113180	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DPF2	NM_006268	exon7	c.C681G	p.H227Q	TTACCACTATGCC	.	57.0	4.0	79.0	0.0	.	54	.	.	Atlas-SNP
FIBP	9158	hgsc.bcm.edu	hg19	11	65652450	65652450	+	Silent	SNP	G	G	T	rs368306000	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FIBP	NM_198897	exon7	c.C796A	p.R266R	TTCCCCGGAGAGC	.	89.0	4.0	132.0	0.0	.	28	.	.	Atlas-SNP
POLD4	57804	hgsc.bcm.edu	hg19	11	67120247	67120247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	POLD4_ENST00000312419,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	POLD4	NM_021173	exon3	c.C214T	p.R72W	TGGCCCGACACCA	.	34.0	3.0	43.0	0.0	.	9	.	.	Atlas-SNP
PITPNM1	9600	hgsc.bcm.edu	hg19	11	67270152	67270152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PITPNM1	NM_001130848	exon3	c.G116A	p.G39D	TCCACGCCGCTGC	.	91.0	4.0	118.0	0.0	.	84	.	.	Atlas-SNP
ALDH3B1	221	hgsc.bcm.edu	hg19	11	67787182	67787182	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001161473	exon6	c.480-2A>G	.	CCTTGCAGAGCTG	.	98.0	4.0	211.0	0.0	.	.	.	.	Atlas-SNP
CPT1A	1374	hgsc.bcm.edu	hg19	11	68580046	68580046	+	Splice_Site	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CPT1A	NM_001031847	exon4	c.142-2A>T	.	CCGTTCTAAAGAC	.	98.0	4.0	126.0	0.0	.	89	.	.	Atlas-SNP
KRTAP5-11	440051	hgsc.bcm.edu	hg19	11	71293531	71293531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KRTAP5-11	NM_001005405	exon1	c.A353G	p.Q118R	CTGGACTGGCAGC	.	102.0	7.0	165.0	0.0	.	36	.	.	Atlas-SNP
RNF169	254225	hgsc.bcm.edu	hg19	11	74546594	74546594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RNF169	NM_001098638	exon6	c.A946G	p.T316A	CAGGTCACAACTA	.	87.0	4.0	98.0	0.0	.	36	.	.	Atlas-SNP
UVRAG	7405	hgsc.bcm.edu	hg19	11	75851784	75851784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UVRAG	NM_003369	exon15	c.C1427A	p.P476H	CAATCCCTGTTCC	.	74.0	4.0	119.0	0.0	.	69	.	.	Atlas-SNP
INTS4	92105	hgsc.bcm.edu	hg19	11	77692604	77692604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	INTS4	NM_033547	exon3	c.A265G	p.R89G	TCAGTCTCACAGA	.	122.0	5.0	166.0	0.0	.	89	.	.	Atlas-SNP
TMEM135	65084	hgsc.bcm.edu	hg19	11	87029247	87029247	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TMEM135	NM_022918	exon13	c.T1146C	p.Y382Y	CATCTATTCCATC	.	69.0	4.0	103.0	0.0	.	40	.	.	Atlas-SNP
KIAA1731	85459	hgsc.bcm.edu	hg19	11	93462654	93462654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA1731	NM_033395	exon26	c.G7357A	p.V2453I	CCAGCTGTATCAG	.	80.0	28.0	86.0	0.0	.	173	.	.	Atlas-SNP
AMOTL1	154810	hgsc.bcm.edu	hg19	11	94602390	94602390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AMOTL1	NM_130847	exon12	c.A2516G	p.E839G	ACCATGAGCATGC	.	93.0	5.0	108.0	0.0	.	95	.	.	Atlas-SNP
ARHGAP42	143872	hgsc.bcm.edu	hg19	11	100843960	100843960	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ARHGAP42	NM_152432	exon18	c.A1605G	p.I535M	TGTCATATTTGGC	.	75.0	5.0	123.0	0.0	.	32	.	.	Atlas-SNP
MMP1	4312	hgsc.bcm.edu	hg19	11	102663360	102663360	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MMP1	NM_002421	exon7	c.A1009G	p.R337G	CATCTCTGTCGGC	.	83.0	4.0	105.0	0.0	.	74	.	.	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	hg19	11	103058312	103058312	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DYNC2H1	NM_001377	exon43	c.A7137G	p.Q2379Q	CCTACAACAGGTA	.	88.0	4.0	106.0	0.0	.	246	.	.	Atlas-SNP
PCSK7	9159	hgsc.bcm.edu	hg19	11	117100222	117100222	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PCSK7	NM_004716	exon3	c.C339A	p.I113I	CTGCCGGATGGCC	.	50.0	4.0	86.0	0.0	.	59	.	.	Atlas-SNP
CEP164	22897	hgsc.bcm.edu	hg19	11	117214976	117214976	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CEP164	NM_001271933	exon3	c.T177C	p.P59P	ACTGCCTGGAGAG	.	106.0	5.0	134.0	0.0	.	121	.	.	Atlas-SNP
UBE4A	9354	hgsc.bcm.edu	hg19	11	118245776	118245776	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UBE4A	NM_004788	exon9	c.A1303G	p.M435V	TTCCAAATGTATG	.	95.0	4.0	158.0	0.0	.	97	.	.	Atlas-SNP
MLL	4297	hgsc.bcm.edu	hg19	11	118392112	118392112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MLL	NM_001197104	exon35	c.G11623A	p.E3875K	AAGCGGGAAAAGT	.	82.0	4.0	113.0	0.0	.	548	.	.	Atlas-SNP
ABCG4	64137	hgsc.bcm.edu	hg19	11	119029042	119029042	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	ABCG4,NS,carcinoma,0,1	ABCG4	NM_022169	exon10	c.G1167T	p.T389T	GGACACGGTGAGG	.	68.0	3.0	113.0	0.0	.	77	.	.	Atlas-SNP
SORL1	6653	hgsc.bcm.edu	hg19	11	121478830	121478830	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SORL1	NM_003105	exon38	c.T5184C	p.S1728S	GACTAGTCGTGGA	.	76.0	4.0	75.0	0.0	.	218	.	.	Atlas-SNP
FOXRED1	55572	hgsc.bcm.edu	hg19	11	126146997	126146997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FOXRED1	NM_017547	exon10	c.T1133C	p.V378A	TGGAAGTGGACCA	.	108.0	5.0	189.0	0.0	.	38	.	.	Atlas-SNP
GLB1L2	89944	hgsc.bcm.edu	hg19	11	134238603	134238603	+	Nonsense_Mutation	SNP	G	G	T	rs138130138	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	GLB1L2,NS,carcinoma,0,1	GLB1L2	NM_138342	exon10	c.G955T	p.G319X	TTCCACGGAGGCA	.	52.0	4.0	76.0	0.0	.	79	.	G|0.997;A|0.003	Atlas-SNP
WNK1	65125	hgsc.bcm.edu	hg19	12	922831	922831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WNK1	NM_001184985	exon2	c.G783T	p.E261D	GTCTGAGAGGCAG	.	74.0	5.0	113.0	0.0	.	403	.	.	Atlas-SNP
WNK1	65125	hgsc.bcm.edu	hg19	12	994233	994233	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WNK1	NM_001184985	exon19	c.T5043C	p.V1681V	TGCAGTTGTCTCA	.	99.0	4.0	103.0	0.0	.	403	.	.	Atlas-SNP
FBXL14	144699	hgsc.bcm.edu	hg19	12	1702401	1702401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FBXL14	NM_152441	exon1	c.A832G	p.S278G	GCAGGCTGCCCAT	.	60.0	4.0	72.0	0.0	.	19	.	.	Atlas-SNP
DCP1B	196513	hgsc.bcm.edu	hg19	12	2062133	2062133	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DCP1B	NM_152640	exon7	c.G973T	p.G325X	ATTCTCCCGCAGA	.	94.0	4.0	98.0	0.0	.	63	.	.	Atlas-SNP
PARP11	57097	hgsc.bcm.edu	hg19	12	3923215	3923215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PARP11	NM_020367	exon7	c.G688A	p.V230I	CAAAGACAGCACC	.	97.0	4.0	134.0	0.0	.	39	.	.	Atlas-SNP
C12orf4	57102	hgsc.bcm.edu	hg19	12	4600397	4600397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C12orf4	NM_020374	exon12	c.A1444G	p.M482V	TAGTCATTTCCTA	.	100.0	6.0	119.0	0.0	.	58	.	.	Atlas-SNP
AKAP3	10566	hgsc.bcm.edu	hg19	12	4736342	4736342	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	AKAP3_ENST00000545990,NS,carcinoma,0,4	AKAP3	NM_006422	exon4	c.G1726T	p.A576S	TGGGAGCAGACTT	.	63.0	3.0	66.0	0.0	.	212	.	.	Atlas-SNP
VWF	7450	hgsc.bcm.edu	hg19	12	6128323	6128323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VWF	NM_000552	exon28	c.A4261G	p.N1421D	TGAGGTTGGCATG	.	96.0	4.0	142.0	0.0	.	338	.	.	Atlas-SNP
CD4	920	hgsc.bcm.edu	hg19	12	6926435	6926435	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	CD4,NS,carcinoma,0,1	CD4	NM_000616	exon7	c.G1095T	p.A365A	TGAGGCGGGGATG	.	100.0	4.0	122.0	1.0	.	47	.	.	Atlas-SNP
PEX5	5830	hgsc.bcm.edu	hg19	12	7344169	7344169	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PEX5	NM_001131023	exon5	c.T366C	p.P122P	AGCCCCTGGTGTG	.	66.0	4.0	82.0	0.0	.	63	.	.	Atlas-SNP
PZP	5858	hgsc.bcm.edu	hg19	12	9318700	9318700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PZP	NM_002864	exon18	c.A2206G	p.T736A	GCACCGTTTCAGG	.	74.0	4.0	143.0	0.0	.	422	.	.	Atlas-SNP
TAS2R8	50836	hgsc.bcm.edu	hg19	12	10959161	10959161	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TAS2R8	NM_023918	exon1	c.T419C	p.I140T	AAGGAAATGGCAA	.	84.0	4.0	123.0	0.0	.	42	.	.	Atlas-SNP
KIAA1551	55196	hgsc.bcm.edu	hg19	12	32135858	32135858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_018169	exon4	c.A1969G	p.T657A	TCCTCAACAAAAG	.	73.0	4.0	87.0	0.0	.	.	.	.	Atlas-SNP
DNM1L	10059	hgsc.bcm.edu	hg19	12	32890048	32890048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DNM1L	NM_012062	exon14	c.A1549G	p.R517G	CAAAGGAGAAACA	.	78.0	4.0	127.0	0.0	.	52	.	.	Atlas-SNP
PKP2	5318	hgsc.bcm.edu	hg19	12	33031343	33031343	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PKP2	NM_004572	exon3	c.G471A	p.E157E	AGCCCTCTCCGGG	.	110.0	15.0	138.0	0.0	.	110	.	.	Atlas-SNP
LRRK2	120892	hgsc.bcm.edu	hg19	12	40677799	40677799	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LRRK2	NM_198578	exon19	c.C2364T	p.S788S	CATCAGCTTGCTC	.	104.0	5.0	181.0	0.0	.	763	.	.	Atlas-SNP
ADAMTS20	80070	hgsc.bcm.edu	hg19	12	43847742	43847742	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADAMTS20	NM_025003	exon12	c.C1728T	p.I576I	ACTTTCGATTCCG	.	76.0	46.0	105.0	0.0	.	635	.	.	Atlas-SNP
ADAMTS20	80070	hgsc.bcm.edu	hg19	12	43847776	43847776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADAMTS20	NM_025003	exon12	c.A1694G	p.Y565C	GAACTGTAAGGTT	.	86.0	47.0	114.0	0.0	.	635	.	.	Atlas-SNP
COL2A1	1280	hgsc.bcm.edu	hg19	12	48374364	48374364	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COL2A1	NM_001844	exon39	c.G2598A	p.Q866Q	GGGGCCCTGAGGA	.	57.0	4.0	70.0	0.0	.	368	.	.	Atlas-SNP
COL2A1	1280	hgsc.bcm.edu	hg19	12	48381091	48381091	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COL2A1	NM_001844	exon20	c.C1227T	p.N409N	TCCAGGGTTACCC	.	100.0	4.0	172.0	0.0	.	368	.	.	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49421091	49421091	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MLL2	NM_003482	exon48	c.A14658G	p.P4886P	TGGCTCTGGGGCG	.	114.0	5.0	172.0	0.0	.	1173	.	.	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49432443	49432443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MLL2	NM_003482	exon34	c.G8696A	p.G2899D	GGTGGGCCCTGAC	.	57.0	4.0	91.0	0.0	.	1173	.	.	Atlas-SNP
DIP2B	57609	hgsc.bcm.edu	hg19	12	51069149	51069149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DIP2B	NM_173602	exon7	c.G834T	p.Q278H	AATCCAGCAGCTT	.	102.0	5.0	164.0	0.0	.	167	.	.	Atlas-SNP
SLC4A8	9498	hgsc.bcm.edu	hg19	12	51844748	51844748	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC4A8	NM_001039960	exon3	c.A219G	p.R73R	CCGGAGACGAGGG	.	109.0	6.0	165.0	0.0	.	292	.	.	Atlas-SNP
KRT85	3891	hgsc.bcm.edu	hg19	12	52754781	52754781	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KRT85	NM_002283	exon9	c.C1380T	p.S460S	GGTGGTGCTGTAG	.	79.0	4.0	117.0	0.0	.	78	.	.	Atlas-SNP
TENC1	23371	hgsc.bcm.edu	hg19	12	53456471	53456471	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TENC1	NM_015319	exon25	c.T3843C	p.R1281R	CCTGCGTCAGGGT	.	57.0	4.0	86.0	0.0	.	148	.	.	Atlas-SNP
SPRYD3	84926	hgsc.bcm.edu	hg19	12	53467190	53467190	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SPRYD3	NM_032840	exon6	c.G573A	p.L191L	CTCACCCAGGGAG	.	80.0	4.0	97.0	0.0	.	29	.	.	Atlas-SNP
ITGB7	3695	hgsc.bcm.edu	hg19	12	53586193	53586193	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ITGB7	NM_000889	exon14	c.C2076T	p.T692T	GTCCAGGGTCCGC	.	35.0	5.0	55.0	0.0	.	60	.	.	Atlas-SNP
NCKAP1L	3071	hgsc.bcm.edu	hg19	12	54932744	54932744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NCKAP1L	NM_005337	exon30	c.T3260C	p.L1087P	TTTCTCTGCTCAT	.	66.0	4.0	99.0	0.0	.	180	.	.	Atlas-SNP
METTL7B	196410	hgsc.bcm.edu	hg19	12	56076035	56076035	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	METTL7B_ENST00000394252,NS,carcinoma,-1,2	METTL7B	NM_152637	exon1	c.C497A	p.P166Q	TGAGACCGGTAAG	.	73.0	3.0	141.0	0.0	.	35	.	.	Atlas-SNP
ERBB3	2065	hgsc.bcm.edu	hg19	12	56493513	56493513	+	Missense_Mutation	SNP	G	G	T	rs376939275	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ERBB3	NM_001982	exon24	c.G2921T	p.R974L	CACCACGGTATCT	.	92.0	4.0	164.0	0.0	.	350	.	.	Atlas-SNP
PAN2	9924	hgsc.bcm.edu	hg19	12	56726754	56726754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PAN2	NM_014871	exon2	c.A125G	p.E42G	ACTCCCTCTGGGT	.	61.0	4.0	57.0	0.0	.	107	.	.	Atlas-SNP
BAZ2A	11176	hgsc.bcm.edu	hg19	12	56993526	56993526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BAZ2A	NM_013449	exon26	c.T5138C	p.V1713A	TCTGGGACAGCCT	.	55.0	4.0	105.0	0.0	.	263	.	.	Atlas-SNP
BAZ2A	11176	hgsc.bcm.edu	hg19	12	56998905	56998905	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BAZ2A	NM_013449	exon14	c.G2706A	p.R902R	CAGCAGCCTGACC	.	83.0	5.0	122.0	0.0	.	263	.	.	Atlas-SNP
SDR9C7	121214	hgsc.bcm.edu	hg19	12	57327864	57327864	+	Missense_Mutation	SNP	C	C	T	rs147708476		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SDR9C7	NM_148897	exon1	c.G182A	p.G61E	TGGGATCCCTCCT	.	74.0	4.0	87.0	0.0	.	31	.	C|1.000;T|0.000	Atlas-SNP
RDH16	8608	hgsc.bcm.edu	hg19	12	57351019	57351019	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RDH16	NM_003708	exon1	c.G228A	p.R76R	CTCCAGCCTGTCT	.	114.0	5.0	188.0	0.0	.	33	.	.	Atlas-SNP
SHMT2	6472	hgsc.bcm.edu	hg19	12	57625269	57625269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SHMT2	NM_005412	exon3	c.C237A	p.F79L	GAACTTCTGCAGC	.	148.0	80.0	179.0	0.0	.	40	.	.	Atlas-SNP
INHBC	3626	hgsc.bcm.edu	hg19	12	57828719	57828719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	INHBC	NM_005538	exon1	c.T50C	p.V17A	CCACAGTGGCCAC	.	68.0	4.0	114.0	0.0	.	28	.	.	Atlas-SNP
KIF5A	3798	hgsc.bcm.edu	hg19	12	57944131	57944131	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIF5A	NM_004984	exon1	c.G77T	p.R26L	TTCTGCGGGGAGA	.	97.0	4.0	154.0	0.0	.	143	.	.	Atlas-SNP
USP15	9958	hgsc.bcm.edu	hg19	12	62783254	62783254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	USP15,NS,carcinoma,0,2	USP15	NM_001252078	exon12	c.G1517T	p.C506F	ATCTTTGTACAGC	.	89.0	5.0	149.0	0.0	.	105	.	.	Atlas-SNP
CPM	1368	hgsc.bcm.edu	hg19	12	69279594	69279594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CPM	NM_001005502	exon3	c.T236C	p.V79A	TTTGCCACGTATT	.	98.0	4.0	134.0	0.0	.	30	.	.	Atlas-SNP
LGR5	8549	hgsc.bcm.edu	hg19	12	71955573	71955573	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LGR5	NM_003667	exon8	c.C798T	p.S266S	TCATAGCAACAAT	.	59.0	4.0	81.0	0.0	.	103	.	.	Atlas-SNP
DUSP6	1848	hgsc.bcm.edu	hg19	12	89744396	89744396	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DUSP6	NM_001946	exon2	c.C807A	p.S269S	AAACTGGGACAGG	.	68.0	4.0	105.0	0.0	.	30	.	.	Atlas-SNP
ATP2B1	490	hgsc.bcm.edu	hg19	12	89997695	89997695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ATP2B1	NM_001001323	exon16	c.C2642A	p.P881Q	TTAAGCGGTGAGT	.	131.0	7.0	168.0	0.0	.	191	.	.	Atlas-SNP
BTG1	694	hgsc.bcm.edu	hg19	12	92538064	92538064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BTG1	NM_001731	exon2	c.C308T	p.T103I	CAGAGTGTGAGTT	.	83.0	4.0	127.0	0.0	.	30	.	.	Atlas-SNP
NTN4	59277	hgsc.bcm.edu	hg19	12	96180818	96180818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NTN4	NM_021229	exon2	c.A484G	p.T162A	AGTTAGTCGCAAA	.	96.0	4.0	169.0	0.0	.	67	.	.	Atlas-SNP
C12orf42	374470	hgsc.bcm.edu	hg19	12	103699815	103699815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C12orf42	NM_001099336	exon5	c.A568G	p.I190V	TGTGTATGCCCTG	.	93.0	4.0	132.0	0.0	.	50	.	.	Atlas-SNP
ALDH1L2	160428	hgsc.bcm.edu	hg19	12	105428158	105428158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ALDH1L2	NM_001034173	exon19	c.T2164C	p.F722L	TGTTGAAAAATAC	.	122.0	5.0	162.0	0.0	.	71	.	.	Atlas-SNP
RFX4	5992	hgsc.bcm.edu	hg19	12	107109249	107109249	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RFX4	NM_001206691	exon11	c.G1092A	p.L364L	GGACCTGAACAGC	.	96.0	4.0	186.0	0.0	.	218	.	.	Atlas-SNP
BRAP	8315	hgsc.bcm.edu	hg19	12	112098444	112098444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BRAP	NM_006768	exon7	c.C932T	p.P311L	TCTACTGGCTCGG	.	121.0	5.0	172.0	0.0	.	42	.	.	Atlas-SNP
OAS1	4938	hgsc.bcm.edu	hg19	12	113354434	113354434	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OAS1	NM_001032409	exon4	c.T775C	p.L259L	ACGGTCTTGGAAT	.	94.0	4.0	162.0	0.0	.	128	.	.	Atlas-SNP
OAS1	4938	hgsc.bcm.edu	hg19	12	113357220	113357220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OAS1	NM_016816	exon6	c.G1065T	p.E355D	CGATGAGACCGAC	.	77.0	5.0	93.0	0.0	.	128	.	.	Atlas-SNP
OAS2	4939	hgsc.bcm.edu	hg19	12	113443013	113443013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OAS2	NM_002535	exon7	c.C1454T	p.A485V	TTCCTGCCTTTAA	.	65.0	4.0	80.0	0.0	.	86	.	.	Atlas-SNP
DDX54	79039	hgsc.bcm.edu	hg19	12	113607596	113607596	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DDX54	NM_024072	exon12	c.C1393A	p.R465R	GGGGTCGGGCGAG	.	82.0	4.0	124.0	0.0	.	73	.	.	Atlas-SNP
KSR2	283455	hgsc.bcm.edu	hg19	12	117969500	117969500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KSR2	NM_173598	exon11	c.A1613G	p.Y538C	TATTTGTAGTAGT	.	40.0	4.0	68.0	0.0	.	208	.	.	Atlas-SNP
WSB2	55884	hgsc.bcm.edu	hg19	12	118472835	118472835	+	Silent	SNP	C	C	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WSB2	NM_018639	exon8	c.G1008C	p.G336G	GCAAAGCCCATTG	.	117.0	9.0	113.0	0.0	.	32	.	.	Atlas-SNP
RAB35	11021	hgsc.bcm.edu	hg19	12	120536685	120536685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RAB35	NM_006861	exon5	c.A407G	p.Y136C	AATTTGTAGGCAT	.	94.0	4.0	144.0	0.0	.	18	.	.	Atlas-SNP
PXN	5829	hgsc.bcm.edu	hg19	12	120651722	120651722	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PXN	NM_001243756	exon10	c.G1474T	p.G492C	CGCAGCCGCCACA	.	71.0	4.0	103.0	0.0	.	69	.	.	Atlas-SNP
NCOR2	9612	hgsc.bcm.edu	hg19	12	124914172	124914172	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NCOR2	NM_006312	exon12	c.T1136C	p.L379P	TCTGAGAGGCCAT	.	103.0	5.0	159.0	0.0	.	475	.	.	Atlas-SNP
NCOR2	9612	hgsc.bcm.edu	hg19	12	124957667	124957667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NCOR2	NM_006312	exon6	c.T422C	p.L141P	CCCGTCAGGCTAC	.	59.0	4.0	64.0	0.0	.	475	.	.	Atlas-SNP
TMEM132B	114795	hgsc.bcm.edu	hg19	12	126139253	126139253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	TMEM132B,rectum,carcinoma,0,1	TMEM132B	NM_052907	exon9	c.G3234A	p.M1078I	CCAGATGTAAACT	.	70.0	3.0	128.0	0.0	.	207	.	.	Atlas-SNP
STX2	2054	hgsc.bcm.edu	hg19	12	131311746	131311746	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STX2	NM_194356	exon2	c.T97C	p.F33L	GATGGAAGAAATC	.	83.0	4.0	125.0	0.0	.	66	.	.	Atlas-SNP
POLE	5426	hgsc.bcm.edu	hg19	12	133256186	133256186	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	POLE	NM_006231	exon6	c.A475G	p.T159A	CCACAGTGTGGAA	.	78.0	4.0	110.0	0.0	.	416	.	.	Atlas-SNP
ZNF140	7699	hgsc.bcm.edu	hg19	12	133682950	133682950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF140	NM_003440	exon5	c.G1087T	p.G363C	GAATGTGGTAAAG	.	88.0	7.0	113.0	0.0	.	18	.	.	Atlas-SNP
MPHOSPH8	54737	hgsc.bcm.edu	hg19	13	20237233	20237233	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MPHOSPH8	NM_017520	exon9	c.C1986T	p.V662V	AAATGTCCAGCAA	.	73.0	4.0	99.0	0.0	.	58	.	.	Atlas-SNP
SGCG	6445	hgsc.bcm.edu	hg19	13	23898576	23898576	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SGCG	NM_000231	exon8	c.T772C	p.S258P	GGCAGCTCACAGA	.	79.0	4.0	144.0	0.0	.	64	.	.	Atlas-SNP
SACS	26278	hgsc.bcm.edu	hg19	13	23910918	23910918	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SACS	NM_014363	exon10	c.A7097G	p.E2366G	GCCGCCTCAAAAT	.	98.0	4.0	131.0	0.0	.	871	.	.	Atlas-SNP
NBEA	26960	hgsc.bcm.edu	hg19	13	36046654	36046654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NBEA	NM_015678	exon41	c.T6566C	p.F2189S	CTGCCTTCAAGAA	.	63.0	4.0	100.0	0.0	.	340	.	.	Atlas-SNP
SUPT20H	55578	hgsc.bcm.edu	hg19	13	37591496	37591496	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_017569	exon23	c.A1881G	p.P627P	ACCACCTGGAAGC	.	137.0	6.0	207.0	0.0	.	.	.	.	Atlas-SNP
FOXO1	2308	hgsc.bcm.edu	hg19	13	41239792	41239792	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FOXO1	NM_002015	exon1	c.C558T	p.I186I	CTCGTAGATCTGC	.	182.0	65.0	333.0	1.0	.	110	.	.	Atlas-SNP
NAA16	79612	hgsc.bcm.edu	hg19	13	41946891	41946891	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NAA16	NM_024561	exon17	c.T2080C	p.S694P	CTGCAGTCTGTCA	.	89.0	4.0	121.0	0.0	.	74	.	.	Atlas-SNP
KCTD4	386618	hgsc.bcm.edu	hg19	13	45768400	45768400	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KCTD4	NM_198404	exon2	c.C303A	p.P101P	CCCTTCGGGCAAT	.	99.0	4.0	133.0	0.0	.	18	.	.	Atlas-SNP
FAM124A	220108	hgsc.bcm.edu	hg19	13	51855022	51855022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FAM124A	NM_145019	exon5	c.A1379G	p.D460G	CATCGGACCTGTC	.	68.0	4.0	77.0	0.0	.	61	.	.	Atlas-SNP
THSD1	55901	hgsc.bcm.edu	hg19	13	52971400	52971400	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	THSD1	NM_199263	exon3	c.A988T	p.K330X	CCTCCTTTGCAGA	.	99.0	4.0	139.0	0.0	.	89	.	.	Atlas-SNP
VPS36	51028	hgsc.bcm.edu	hg19	13	53008984	53008984	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VPS36	NM_016075	exon5	c.A385G	p.R129G	ATCTTCTTTGTGT	.	98.0	4.0	134.0	0.0	.	38	.	.	Atlas-SNP
PIBF1	10464	hgsc.bcm.edu	hg19	13	73428292	73428292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PIBF1	NM_006346	exon10	c.A1321G	p.R441G	TTAGACAGGTAAG	.	80.0	4.0	100.0	0.0	.	65	.	.	Atlas-SNP
UCHL3	7347	hgsc.bcm.edu	hg19	13	76135000	76135000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UCHL3	NM_006002	exon3	c.T166C	p.F56L	CTTCTCTTTCCTA	.	105.0	5.0	135.0	0.0	.	9	.	.	Atlas-SNP
DCT	1638	hgsc.bcm.edu	hg19	13	95131305	95131305	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DCT	NM_001129889	exon1	c.A205G	p.R69G	AGGGCCTTGTGTC	.	97.0	4.0	147.0	0.0	.	186	.	.	Atlas-SNP
HS6ST3	266722	hgsc.bcm.edu	hg19	13	97484904	97484904	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HS6ST3	NM_153456	exon2	c.T868C	p.W290R	GATGACTGGTCTG	.	93.0	4.0	105.0	0.0	.	54	.	.	Atlas-SNP
DOCK9	23348	hgsc.bcm.edu	hg19	13	99519792	99519792	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DOCK9	NM_015296	exon31	c.3178-2A>G	.	AGGGTCTGCAGGA	.	38.0	4.0	45.0	0.0	.	311	.	.	Atlas-SNP
COL4A1	1282	hgsc.bcm.edu	hg19	13	110822983	110822983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COL4A1	NM_001845	exon42	c.A3653G	p.Q1218R	TGTCCCTGGGGCC	.	50.0	4.0	86.0	0.0	.	372	.	.	Atlas-SNP
COL4A1	1282	hgsc.bcm.edu	hg19	13	110833649	110833649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COL4A1	NM_001845	exon29	c.A2183G	p.Q728R	TGGCCCTGCACAC	.	85.0	5.0	173.0	0.0	.	372	.	.	Atlas-SNP
TUBGCP3	10426	hgsc.bcm.edu	hg19	13	113242240	113242240	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TUBGCP3	NM_006322	exon1	c.A55G	p.R19G	GGATCCTGCAGCA	.	94.0	4.0	108.0	0.0	.	74	.	.	Atlas-SNP
TEP1	7011	hgsc.bcm.edu	hg19	14	20874483	20874483	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TEP1	NM_007110	exon3	c.A644G	p.E215G	TCCTCCTCCTCTC	.	92.0	4.0	107.0	0.0	.	224	.	.	Atlas-SNP
OSGEP	55644	hgsc.bcm.edu	hg19	14	20920172	20920172	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OSGEP	NM_017807	exon3	c.C372A	p.T124T	TGGGCTGGTGGCT	.	132.0	6.0	159.0	0.0	.	31	.	.	Atlas-SNP
RNASE10	338879	hgsc.bcm.edu	hg19	14	20978863	20978863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RNASE10	NM_001012975	exon1	c.C233A	p.P78H	TGCAACCTGGCTG	.	82.0	4.0	72.0	0.0	.	28	.	.	Atlas-SNP
EDDM3B	64184	hgsc.bcm.edu	hg19	14	21238598	21238598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EDDM3B	NM_022360	exon2	c.C289A	p.Q97K	TGGGTCCAGAATC	.	95.0	4.0	109.0	0.0	.	23	.	.	Atlas-SNP
OR5AU1	390445	hgsc.bcm.edu	hg19	14	21623682	21623682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OR5AU1	NM_001004731	exon1	c.C503A	p.A168D	GCCATGGCAGCGA	.	81.0	4.0	80.0	0.0	.	46	.	.	Atlas-SNP
PRMT5	10419	hgsc.bcm.edu	hg19	14	23393528	23393528	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	PRMT5_ENST00000397441,colon,carcinoma,0,2	PRMT5	NM_006109	exon11	c.C1150A	p.R384R	TCCGCCGGTCGGC	.	49.0	2.0	63.0	1.0	.	101	.	.	Atlas-SNP
PSMB11	122706	hgsc.bcm.edu	hg19	14	23511752	23511752	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PSMB11	NM_001099780	exon1	c.G318T	p.R106R	GTATCGGGTATTA	.	78.0	4.0	102.0	0.0	.	40	.	.	Atlas-SNP
HOMEZ	57594	hgsc.bcm.edu	hg19	14	23745570	23745570	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HOMEZ	NM_020834	exon2	c.T867C	p.S289S	AGAAGAAGAGGTA	.	132.0	18.0	138.0	0.0	.	80	.	.	Atlas-SNP
SLC22A17	51310	hgsc.bcm.edu	hg19	14	23816000	23816000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC22A17	NM_020372	exon9	c.C1474A	p.L492M	GCAGCAGCATAAT	.	39.0	13.0	38.0	0.0	.	32	.	.	Atlas-SNP
MYH6	4624	hgsc.bcm.edu	hg19	14	23865912	23865912	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MYH6	NM_002471	exon19	c.C2283A	p.G761G	GGTGTGGCCAAAC	.	124.0	5.0	156.0	0.0	.	274	.	.	Atlas-SNP
DHRS4L1	728635	hgsc.bcm.edu	hg19	14	24507078	24507078	+	Silent	SNP	C	C	T	rs373705961		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001082488	exon2	c.C255T	p.G85G	GACGGGCACTGTG	.	306.0	130.0	415.0	0.0	.	.	.	.	Atlas-SNP
LRRC16B	90668	hgsc.bcm.edu	hg19	14	24523931	24523931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	LRRC16B,NS,carcinoma,0,1	LRRC16B	NM_138360	exon6	c.G374T	p.R125L	TGATCCGGCGTGG	.	58.0	3.0	36.0	0.0	.	120	.	.	Atlas-SNP
GMPR2	51292	hgsc.bcm.edu	hg19	14	24702442	24702442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GMPR2	NM_016576	exon1	c.A37G	p.T13A	ATCGCTACCCCGA	.	105.0	5.0	132.0	0.0	.	37	.	.	Atlas-SNP
HEATR5A	25938	hgsc.bcm.edu	hg19	14	31819853	31819853	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HEATR5A	NM_015473	exon17	c.T2482C	p.L828L	CATGTAACTGAAC	.	61.0	4.0	68.0	0.0	.	181	.	.	Atlas-SNP
FANCM	57697	hgsc.bcm.edu	hg19	14	45644488	45644488	+	Missense_Mutation	SNP	A	A	G	rs113630826		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FANCM	NM_020937	exon14	c.A2531G	p.H844R	AAACTCATATCAA	.	97.0	4.0	113.0	0.0	.	225	.	A|0.500;G|0.500	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64630261	64630261	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SYNE2	NM_182914	exon89	c.T16441C	p.L5481L	GCTTATTTGGAAA	.	94.0	4.0	120.0	0.0	.	577	.	.	Atlas-SNP
PLEKHH1	57475	hgsc.bcm.edu	hg19	14	68029351	68029351	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLEKHH1	NM_020715	exon7	c.C1003G	p.P335A	AGCCAGCCCCAGG	.	97.0	4.0	139.0	0.0	.	118	.	.	Atlas-SNP
EXD2	55218	hgsc.bcm.edu	hg19	14	69704317	69704317	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EXD2	NM_001193361	exon8	c.C1318A	p.R440R	GAGTACCGGAAGC	.	99.0	4.0	92.0	0.0	.	43	.	.	Atlas-SNP
SIPA1L1	26037	hgsc.bcm.edu	hg19	14	72138015	72138015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SIPA1L1	NM_015556	exon8	c.A2435G	p.Y812C	AGGAATACCTGAA	.	149.0	6.0	145.0	0.0	.	219	.	.	Atlas-SNP
ISCA2	122961	hgsc.bcm.edu	hg19	14	74960541	74960541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ISCA2	NM_001272007	exon1	c.A64G	p.R22G	TGGCCGAGGGGCA	.	79.0	5.0	94.0	0.0	.	4	.	.	Atlas-SNP
KIAA0317	9870	hgsc.bcm.edu	hg19	14	75130431	75130431	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA0317	NM_001039479	exon20	c.A2464G	p.M822V	AGAGCATGCCAAA	.	70.0	5.0	71.0	0.0	.	68	.	.	Atlas-SNP
TGFB3	7043	hgsc.bcm.edu	hg19	14	76437504	76437504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TGFB3	NM_003239	exon3	c.T611C	p.V204A	TCAGTGACATCAA	.	53.0	4.0	62.0	0.0	.	25	.	.	Atlas-SNP
VASH1	22846	hgsc.bcm.edu	hg19	14	77237533	77237533	+	Silent	SNP	G	G	A	rs202147705	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	VASH1_ENST00000554237,NS,carcinoma,0,2	VASH1	NM_014909	exon3	c.G399A	p.Q133Q	CCACAGGTACAAT	.	357.0	98.0	452.0	0.0	.	57	.	.	Atlas-SNP
KIAA1737	85457	hgsc.bcm.edu	hg19	14	77580248	77580248	+	Missense_Mutation	SNP	G	G	T	rs201665496	by1000genomes;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	KIAA1737,NS,carcinoma,0,1	KIAA1737	NM_033426	exon4	c.G787T	p.A263S	TCCCCCGCCAGTC	.	71.0	3.0	83.0	0.0	.	26	.	G|1.000;C|0.000	Atlas-SNP
POMT2	29954	hgsc.bcm.edu	hg19	14	77746806	77746806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	POMT2	NM_013382	exon16	c.G1654T	p.G552W	TGTTCCCCTGCAT	.	166.0	83.0	256.0	0.0	.	47	.	.	Atlas-SNP
STON2	85439	hgsc.bcm.edu	hg19	14	81744156	81744156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STON2	NM_001256430	exon6	c.G1499T	p.R500L	TCTATCCGCAAGC	.	113.0	5.0	131.0	0.0	.	94	.	.	Atlas-SNP
CPSF2	53981	hgsc.bcm.edu	hg19	14	92624221	92624221	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CPSF2	NM_017437	exon13	c.T1814C	p.I605T	CTCACATCTACCA	.	87.0	4.0	99.0	0.0	.	63	.	.	Atlas-SNP
CYP46A1	10858	hgsc.bcm.edu	hg19	14	100192567	100192567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CYP46A1	NM_006668	exon14	c.T1306C	p.S436P	CACCGCTCCTGCA	.	74.0	4.0	125.0	0.0	.	62	.	.	Atlas-SNP
DLK1	8788	hgsc.bcm.edu	hg19	14	101201179	101201179	+	Silent	SNP	C	C	A	rs150069528	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	DLK1,NS,carcinoma,0,1	DLK1	NM_003836	exon5	c.C1098A	p.P366P	CTTCCCCGAGAAG	.	25.0	2.0	32.0	0.0	.	57	.	C|0.999;T|0.001	Atlas-SNP
DYNC1H1	1778	hgsc.bcm.edu	hg19	14	102452814	102452814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DYNC1H1	NM_001376	exon8	c.G2252T	p.R751L	AAGTCCGGAACCT	.	92.0	4.0	93.0	0.0	.	395	.	.	Atlas-SNP
BAG5	9529	hgsc.bcm.edu	hg19	14	104026834	104026834	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BAG5	NM_001015049	exon2	c.T791C	p.L264P	GCGATCAGCCCCG	.	98.0	4.0	146.0	0.0	.	47	.	.	Atlas-SNP
THBS1	7057	hgsc.bcm.edu	hg19	15	39886308	39886308	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	THBS1	NM_003246	exon20	c.C3276A	p.T1092T	GCGCACCCTGTGG	.	103.0	5.0	122.0	0.0	.	106	.	.	Atlas-SNP
IVD	3712	hgsc.bcm.edu	hg19	15	40700141	40700141	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IVD	NM_002225	exon3	c.T247C	p.F83L	CAGGAATTTTGGA	.	74.0	4.0	81.0	0.0	.	29	.	.	Atlas-SNP
GATM	2628	hgsc.bcm.edu	hg19	15	45658625	45658625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GATM	NM_001482	exon5	c.T757C	p.F253L	CATCAAAGCATGG	.	86.0	4.0	103.0	0.0	.	34	.	.	Atlas-SNP
GATM	2628	hgsc.bcm.edu	hg19	15	45658705	45658705	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GATM	NM_001482	exon5	c.A677G	p.D226G	GGATAATCCTAAT	.	68.0	4.0	70.0	0.0	.	34	.	.	Atlas-SNP
MYEF2	50804	hgsc.bcm.edu	hg19	15	48441407	48441407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MYEF2	NM_016132	exon15	c.A1540G	p.M514V	CTCTCATTCCGCT	.	121.0	5.0	132.0	0.0	.	67	.	.	Atlas-SNP
FBN1	2200	hgsc.bcm.edu	hg19	15	48756205	48756205	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FBN1	NM_000138	exon41	c.T4956A	p.C1652X	AGTCTCACATTCA	.	98.0	4.0	103.0	0.0	.	310	.	.	Atlas-SNP
ATP8B4	79895	hgsc.bcm.edu	hg19	15	50190396	50190396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ATP8B4	NM_024837	exon22	c.T2342C	p.M781T	TTACACATGCAAG	.	150.0	6.0	129.0	0.0	.	173	.	.	Atlas-SNP
UNC13C	440279	hgsc.bcm.edu	hg19	15	54305696	54305696	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UNC13C	NM_001080534	exon1	c.A596G	p.E199G	ACTCAGAGTTAAG	.	90.0	4.0	141.0	0.0	.	674	.	.	Atlas-SNP
NEDD4	4734	hgsc.bcm.edu	hg19	15	56125247	56125247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NEDD4	NM_198400	exon20	c.G3527A	p.G1176D	GATGTGCCAGTGA	.	82.0	5.0	82.0	0.0	.	167	.	.	Atlas-SNP
ZNF280D	54816	hgsc.bcm.edu	hg19	15	56924037	56924037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF280D	NM_017661	exon22	c.A2599G	p.K867E	GATCTTTAATCTG	.	74.0	4.0	93.0	0.0	.	82	.	.	Atlas-SNP
CGNL1	84952	hgsc.bcm.edu	hg19	15	57754012	57754012	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CGNL1	NM_032866	exon8	c.T2325G	p.D775E	CCATGATCAGGAG	.	89.0	21.0	136.0	0.0	.	125	.	.	Atlas-SNP
LIPC	3990	hgsc.bcm.edu	hg19	15	58840664	58840664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LIPC	NM_000236	exon6	c.G944A	p.S315N	GCCTGAGCTGCAA	.	135.0	64.0	172.0	0.0	.	56	.	.	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	hg19	15	63915040	63915040	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HERC1	NM_003922	exon74	c.C13662A	p.T4554T	TTCTGCGGTGGCA	.	71.0	4.0	77.0	0.0	.	624	.	.	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	hg19	15	63920929	63920929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HERC1	NM_003922	exon70	c.G13052A	p.G4351D	CAGCGGCCAGCCG	.	130.0	6.0	157.0	0.0	.	624	.	.	Atlas-SNP
TRIP4	9325	hgsc.bcm.edu	hg19	15	64689807	64689807	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TRIP4	NM_016213	exon4	c.A408G	p.A136A	ATAGGCACAAGAG	.	94.0	5.0	128.0	0.0	.	43	.	.	Atlas-SNP
SPG21	51324	hgsc.bcm.edu	hg19	15	65261687	65261687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SPG21	NM_001127889	exon7	c.G574T	p.G192C	TCTGACCCAAACT	.	94.0	4.0	88.0	0.0	.	29	.	.	Atlas-SNP
IQCH	64799	hgsc.bcm.edu	hg19	15	67664646	67664646	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IQCH	NM_001031715	exon9	c.C951A	p.V317V	AGAAGTCAAAATA	.	139.0	6.0	120.0	0.0	.	81	.	.	Atlas-SNP
MAP2K5	5607	hgsc.bcm.edu	hg19	15	67835762	67835762	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MAP2K5	NM_145160	exon1	c.A89G	p.D30G	CGGTGGACTGGAC	.	120.0	5.0	191.0	0.0	.	70	.	.	Atlas-SNP
CLN6	54982	hgsc.bcm.edu	hg19	15	68504132	68504132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CLN6	NM_017882	exon4	c.G367A	p.G123S	TGGCACCCATGAT	.	98.0	4.0	136.0	0.0	.	16	.	.	Atlas-SNP
GLCE	26035	hgsc.bcm.edu	hg19	15	69561466	69561466	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GLCE	NM_015554	exon5	c.T1737C	p.H579H	CTATCATACCACC	.	88.0	4.0	100.0	0.0	.	48	.	.	Atlas-SNP
MYO9A	4649	hgsc.bcm.edu	hg19	15	72152137	72152137	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MYO9A	NM_006901	exon34	c.T6092C	p.L2031S	TTGCATACTGAAA	.	53.0	5.0	97.0	0.0	.	203	.	.	Atlas-SNP
ARIH1	25820	hgsc.bcm.edu	hg19	15	72859489	72859489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ARIH1	NM_005744	exon9	c.A997G	p.T333A	AGTGAAACCTCCA	.	149.0	6.0	196.0	0.0	.	42	.	.	Atlas-SNP
BBS4	585	hgsc.bcm.edu	hg19	15	73028183	73028183	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BBS4	NM_033028	exon14	c.A1124C	p.N375T	TAGTAAACCTGAA	.	92.0	4.0	115.0	0.0	.	34	.	.	Atlas-SNP
ISLR	3671	hgsc.bcm.edu	hg19	15	74468160	74468160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ISLR	NM_201526	exon2	c.G961A	p.E321K	AAGCTGGAGGAAG	.	36.0	16.0	67.0	0.0	.	49	.	.	Atlas-SNP
CCDC33	80125	hgsc.bcm.edu	hg19	15	74573035	74573035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CCDC33	NM_025055	exon9	c.A916G	p.N306D	ACCCTCAACCAGC	.	87.0	4.0	97.0	0.0	.	160	.	.	Atlas-SNP
MPI	4351	hgsc.bcm.edu	hg19	15	75183814	75183814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MPI	NM_002435	exon3	c.A239G	p.D80G	ACCAGGACAGCTT	.	111.0	6.0	130.0	0.0	.	32	.	.	Atlas-SNP
RCN2	5955	hgsc.bcm.edu	hg19	15	77241444	77241444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RCN2	NM_001271837	exon8	c.G889T	p.G297C	TTGAATGGTGACA	.	74.0	5.0	62.0	0.0	.	16	.	.	Atlas-SNP
SH2D7	646892	hgsc.bcm.edu	hg19	15	78386536	78386536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SH2D7	NM_001101404	exon2	c.T259C	p.S87P	ATCTTGTCCTACA	.	63.0	4.0	80.0	0.0	.	26	.	.	Atlas-SNP
AP3B2	8120	hgsc.bcm.edu	hg19	15	83358199	83358199	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AP3B2	NM_004644	exon2	c.T120C	p.D40D	CAGGTCATCATGC	.	95.0	4.0	136.0	0.0	.	103	.	.	Atlas-SNP
HDGFRP3	0	hgsc.bcm.edu	hg19	15	83832817	83832817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	HDGFRP3,NS,carcinoma,0,1	HDGFRP3	NM_016073	exon2	c.T95C	p.L32P	TCTGGGAGTTCAT	.	107.0	5.0	109.0	0.0	.	17	.	.	Atlas-SNP
ADAMTSL3	57188	hgsc.bcm.edu	hg19	15	84694002	84694002	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADAMTSL3	NM_207517	exon27	c.T4470C	p.S1490S	CACAAGTGTGTGG	.	54.0	5.0	106.0	0.0	.	290	.	.	Atlas-SNP
GOLGA6L4	0	hgsc.bcm.edu	hg19	15	84909434	84909434	+	Missense_Mutation	SNP	G	G	A	rs2175418		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	RP11-671M22.1_ENST00000510439,NS,carcinoma,0,20	.	NM_001267536	exon9	c.G920A	p.R307Q	GGCTGCGGGAGCT	.	3.0	2.0	0.0	0.0	.	.	.	.	Atlas-SNP
ZNF592	9640	hgsc.bcm.edu	hg19	15	85341254	85341254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF592	NM_014630	exon6	c.A2554G	p.T852A	CACCCCACCCAGC	.	76.0	4.0	97.0	0.0	.	95	.	.	Atlas-SNP
AGBL1	123624	hgsc.bcm.edu	hg19	15	87097688	87097688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AGBL1	NM_152336	exon20	c.G2776T	p.V926L	CGGGTGGTGGTGT	.	103.0	5.0	133.0	0.0	.	151	.	.	Atlas-SNP
ZNF774	342132	hgsc.bcm.edu	hg19	15	90903883	90903883	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF774	NM_001004309	exon4	c.C820A	p.R274R	TTCAGTCGAAGCT	.	84.0	5.0	86.0	0.0	.	35	.	.	Atlas-SNP
IQGAP1	8826	hgsc.bcm.edu	hg19	15	90999516	90999516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IQGAP1	NM_003870	exon15	c.C1745T	p.T582M	AAGACACGCTGAT	.	90.0	4.0	107.0	0.0	.	140	.	.	Atlas-SNP
FURIN	5045	hgsc.bcm.edu	hg19	15	91420416	91420416	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FURIN	NM_002569	exon6	c.C553A	p.R185R	CAGCCTCGGTACA	.	82.0	4.0	133.0	0.0	.	85	.	.	Atlas-SNP
SV2B	9899	hgsc.bcm.edu	hg19	15	91769904	91769904	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SV2B	NM_014848	exon3	c.G411A	p.E137E	TGCAGAGAAGGAC	.	80.0	26.0	76.0	0.0	.	98	.	.	Atlas-SNP
CHD2	1106	hgsc.bcm.edu	hg19	15	93522390	93522390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CHD2	NM_001271	exon22	c.A2753G	p.K918R	TTACAAAGGGGAC	.	71.0	4.0	90.0	0.0	.	280	.	.	Atlas-SNP
AXIN1	8312	hgsc.bcm.edu	hg19	16	396448	396448	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AXIN1	NM_181050	exon2	c.T578A	p.M193K	TCCTCCATAGTGG	.	114.0	20.0	192.0	0.0	.	290	.	.	Atlas-SNP
WDR90	197335	hgsc.bcm.edu	hg19	16	711769	711769	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WDR90	NM_145294	exon31	c.G3846T	p.G1282G	GCGTGGGGCAGAC	.	87.0	4.0	220.0	0.0	.	107	.	.	Atlas-SNP
MSLN	10232	hgsc.bcm.edu	hg19	16	818713	818713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MSLN	NM_013404	exon17	c.C1873A	p.L625I	CTGCTCCTAGCCT	.	59.0	4.0	149.0	0.0	.	109	.	.	Atlas-SNP
MEIOB	254528	hgsc.bcm.edu	hg19	16	1884289	1884289	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001163560	exon14	c.A1384G	p.S462G	TTCTGCTTGCCTC	.	90.0	4.0	173.0	0.0	.	.	.	.	Atlas-SNP
SLC9A3R2	9351	hgsc.bcm.edu	hg19	16	2079608	2079608	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC9A3R2	NM_004785	exon2	c.A239G	p.E80G	CTGTGGAGGGGCA	.	108.0	5.0	191.0	0.0	.	24	.	.	Atlas-SNP
AMDHD2	51005	hgsc.bcm.edu	hg19	16	2580390	2580390	+	Missense_Mutation	SNP	T	T	C	rs375591203		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AMDHD2	NM_001145815	exon11	c.T1415C	p.M472T	CACCCATGTGGCA	.	78.0	4.0	167.0	0.0	.	33	.	.	Atlas-SNP
CREBBP	1387	hgsc.bcm.edu	hg19	16	3778015	3778015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CREBBP	NM_004380	exon31	c.T7033C	p.S2345P	CTGGAGACCGCAC	.	108.0	5.0	223.0	0.0	.	546	.	.	Atlas-SNP
C16orf96	342346	hgsc.bcm.edu	hg19	16	4626475	4626475	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C16orf96	NM_001145011	exon5	c.A1994G	p.Q665R	TGTCCCAGGCCAT	.	93.0	5.0	143.0	0.0	.	28	.	.	Atlas-SNP
ZC3H7A	29066	hgsc.bcm.edu	hg19	16	11862325	11862325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	ZC3H7A,NS,carcinoma,0,2	ZC3H7A	NM_014153	exon12	c.G1206T	p.E402D	GAAATTCTCTGAA	.	60.0	3.0	81.0	0.0	.	72	.	.	Atlas-SNP
RRN3	54700	hgsc.bcm.edu	hg19	16	15168676	15168676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RRN3	NM_018427	exon11	c.G901A	p.E301K	GCCGTTCAGGACC	.	71.0	4.0	119.0	0.0	.	36	.	.	Atlas-SNP
SMG1	23049	hgsc.bcm.edu	hg19	16	18846414	18846414	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMG1	NM_015092	exon49	c.G8130A	p.L2710L	TCGCTGCAGGGTC	.	203.0	116.0	243.0	0.0	.	401	.	.	Atlas-SNP
PALB2	79728	hgsc.bcm.edu	hg19	16	23641766	23641766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PALB2	NM_024675	exon5	c.A1709G	p.E570G	GAATCCTCTTTTT	.	93.0	4.0	189.0	0.0	.	108	.	.	Atlas-SNP
ERN2	10595	hgsc.bcm.edu	hg19	16	23707249	23707249	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ERN2	NM_033266	exon14	c.C1720T	p.L574L	GGCCCAGCACGTC	.	75.0	22.0	96.0	0.0	.	131	.	.	Atlas-SNP
TNRC6A	27327	hgsc.bcm.edu	hg19	16	24834848	24834848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TNRC6A	NM_014494	exon25	c.C5609A	p.P1870H	CTTCTCCCGGCTG	.	61.0	4.0	104.0	0.0	.	171	.	.	Atlas-SNP
GTF3C1	2975	hgsc.bcm.edu	hg19	16	27499733	27499733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GTF3C1	NM_001520	exon23	c.A3515G	p.N1172S	CTGCTGTTGCCTA	.	60.0	4.0	105.0	0.0	.	210	.	.	Atlas-SNP
SEZ6L2	26470	hgsc.bcm.edu	hg19	16	29891258	29891258	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SEZ6L2	NM_001243332	exon9	c.T1500C	p.P500P	GGGCCCAGGGGGC	.	70.0	4.0	95.0	0.0	.	137	.	.	Atlas-SNP
ITGAL	3683	hgsc.bcm.edu	hg19	16	30500452	30500452	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ITGAL	NM_002209	exon10	c.C1056T	p.S352S	CTCCAGCGGCATC	.	100.0	4.0	124.0	0.0	.	149	.	.	Atlas-SNP
ITGAX	3687	hgsc.bcm.edu	hg19	16	31373480	31373480	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ITGAX	NM_000887	exon11	c.A1171T	p.I391F	ACCTTCATCAACA	.	86.0	4.0	170.0	0.0	.	198	.	.	Atlas-SNP
NETO2	81831	hgsc.bcm.edu	hg19	16	47163230	47163230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NETO2	NM_018092	exon3	c.G137A	p.G46D	CAAATGCCACACT	.	79.0	4.0	138.0	0.0	.	67	.	.	Atlas-SNP
N4BP1	9683	hgsc.bcm.edu	hg19	16	48596338	48596338	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	N4BP1_ENST00000262384,NS,carcinoma,0,2	N4BP1	NM_153029	exon2	c.C216A	p.I72I	TTCACAGATTCCT	.	72.0	3.0	126.0	0.0	.	121	.	.	Atlas-SNP
SALL1	6299	hgsc.bcm.edu	hg19	16	51175284	51175284	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SALL1	NM_002968	exon2	c.C849A	p.S283S	TAGCGTGGACAAG	.	69.0	4.0	110.0	0.0	.	301	.	.	Atlas-SNP
RPGRIP1L	23322	hgsc.bcm.edu	hg19	16	53636067	53636067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RPGRIP1L	NM_015272	exon27	c.G3869A	p.G1290D	AGCTTGCCAATAC	.	95.0	4.0	154.0	0.0	.	118	.	.	Atlas-SNP
SLC6A2	6530	hgsc.bcm.edu	hg19	16	55690842	55690842	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC6A2	NM_001172501	exon2	c.T236C	p.V79A	CCAACGTGTGGCG	.	87.0	5.0	178.0	0.0	.	189	.	.	Atlas-SNP
NUP93	9688	hgsc.bcm.edu	hg19	16	56868679	56868679	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NUP93	NM_014669	exon16	c.G1771T	p.G591X	AATGACGGAAGTA	.	94.0	5.0	171.0	0.0	.	75	.	.	Atlas-SNP
CX3CL1	6376	hgsc.bcm.edu	hg19	16	57416825	57416825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CX3CL1	NM_002996	exon3	c.A1075G	p.M359V	GTGGCCATGTTCA	.	44.0	4.0	93.0	0.0	.	27	.	.	Atlas-SNP
GOT2	2806	hgsc.bcm.edu	hg19	16	58743423	58743423	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GOT2	NM_002080	exon9	c.T1068C	p.T356T	CAGTTGAGTCCGC	.	34.0	4.0	58.0	0.0	.	42	.	.	Atlas-SNP
CDH5	1003	hgsc.bcm.edu	hg19	16	66426269	66426269	+	Silent	SNP	G	G	T	rs376087780	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	CDH5,NS,carcinoma,0,1	CDH5	NM_001795	exon7	c.G1200T	p.A400A	TGATGCGGCTAGG	.	42.0	3.0	85.0	0.0	.	111	.	.	Atlas-SNP
CMTM4	146223	hgsc.bcm.edu	hg19	16	66651253	66651253	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CMTM4	NM_178818	exon5	c.A632T	p.Y211F	GTGGAGTAGGAAA	.	287.0	98.0	405.0	1.0	.	19	.	.	Atlas-SNP
PSKH1	5681	hgsc.bcm.edu	hg19	16	67942888	67942888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	PSKH1,NS,carcinoma,0,1	PSKH1	NM_006742	exon2	c.G236T	p.R79L	CACCACGCAGGGC	.	89.0	4.0	163.0	0.0	.	28	.	.	Atlas-SNP
TANGO6	79613	hgsc.bcm.edu	hg19	16	68953121	68953121	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_024562	exon12	c.A2126T	p.Q709L	CTGTTCAGGTGAG	.	112.0	23.0	220.0	0.0	.	.	.	.	Atlas-SNP
AARS	16	hgsc.bcm.edu	hg19	16	70292100	70292100	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AARS	NM_001605	exon15	c.C2013T	p.C671C	CAGGGGGCAATCC	.	70.0	4.0	117.0	0.0	.	62	.	.	Atlas-SNP
FTSJD1	55783	hgsc.bcm.edu	hg19	16	71319522	71319522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FTSJD1	NM_018348	exon3	c.A302G	p.H101R	CTAACATGAGAAA	.	79.0	6.0	131.0	0.0	.	70	.	.	Atlas-SNP
RFWD3	55159	hgsc.bcm.edu	hg19	16	74694849	74694849	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RFWD3	NM_018124	exon2	c.C499T	p.Q167X	TCCTCTGAGACCC	.	97.0	4.0	154.0	0.0	.	49	.	.	Atlas-SNP
MON1B	22879	hgsc.bcm.edu	hg19	16	77225506	77225506	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MON1B	NM_014940	exon2	c.G124T	p.E42X	GATCCCGAAGACG	.	82.0	4.0	154.0	0.0	.	55	.	.	Atlas-SNP
SYCE1L	100130958	hgsc.bcm.edu	hg19	16	77243331	77243331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SYCE1L	NM_001129979	exon6	c.C322A	p.Q108K	ATCCTCCAGATGC	.	54.0	4.0	89.0	0.0	.	10	.	.	Atlas-SNP
JPH3	57338	hgsc.bcm.edu	hg19	16	87723326	87723326	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	JPH3	NM_020655	exon4	c.C1360T	p.Q454X	CCCCTGCAGCAGG	.	71.0	4.0	206.0	0.0	.	95	.	.	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88500010	88500010	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF469	NM_001127464	exon2	c.A6048G	p.A2016A	CAGGGCAGCCATG	.	60.0	4.0	160.0	0.0	.	121	.	.	Atlas-SNP
ZNF778	197320	hgsc.bcm.edu	hg19	16	89294364	89294364	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF778	NM_001201407	exon7	c.A1668G	p.T556T	TCACACAGAGGAG	.	87.0	4.0	135.0	0.0	.	67	.	.	Atlas-SNP
VPS53	55275	hgsc.bcm.edu	hg19	17	526908	526908	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VPS53	NM_001128159	exon11	c.A981G	p.E327E	GGCAAGTTCTGCC	.	94.0	4.0	103.0	0.0	.	109	.	.	Atlas-SNP
SMG6	23293	hgsc.bcm.edu	hg19	17	1964865	1964865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMG6	NM_017575	exon19	c.A4181G	p.N1394S	CGCAGGTTCCGGT	.	79.0	4.0	100.0	0.0	.	97	.	.	Atlas-SNP
PLD2	5338	hgsc.bcm.edu	hg19	17	4712848	4712848	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLD2	NM_002663	exon7	c.614+2T>C	.	GGACTGTGAGTGT	.	110.0	6.0	114.0	0.0	.	138	.	.	Atlas-SNP
DHX33	56919	hgsc.bcm.edu	hg19	17	5365718	5365718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DHX33	NM_020162	exon3	c.C599A	p.T200N	TGGATAGTCCGTT	.	69.0	4.0	138.0	0.0	.	41	.	.	Atlas-SNP
POLR2A	5430	hgsc.bcm.edu	hg19	17	7404157	7404157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	POLR2A	NM_000937	exon11	c.G1871T	p.G624V	CTCCTGGGGACAC	.	78.0	4.0	172.0	0.0	.	157	.	.	Atlas-SNP
AURKB	9212	hgsc.bcm.edu	hg19	17	8110166	8110166	+	Silent	SNP	G	G	T	rs148133660	bycluster;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	AURKB_ENST00000316199,NS,haematopoietic_neoplasm,0,1	AURKB	NM_004217	exon6	c.C439A	p.R147R	TCCTCCGGTCATA	.	48.0	4.0	147.0	0.0	.	47	.	G|1.000;A|0.000	Atlas-SNP
CTC1	80169	hgsc.bcm.edu	hg19	17	8131843	8131843	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CTC1	NM_025099	exon22	c.A3492G	p.K1164K	CGACGGTTTCCTT	.	61.0	5.0	128.0	0.0	.	75	.	.	Atlas-SNP
CTC1	80169	hgsc.bcm.edu	hg19	17	8133211	8133211	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CTC1	NM_025099	exon18	c.C3009A	p.I1003I	TGACCTGATGGTG	.	43.0	4.0	97.0	0.0	.	75	.	.	Atlas-SNP
RANGRF	29098	hgsc.bcm.edu	hg19	17	8192743	8192743	+	Missense_Mutation	SNP	G	G	T	rs370613922	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RANGRF	NM_001177802	exon3	c.G362T	p.R121L	GGGCCCGAGAGTG	.	91.0	4.0	248.0	0.0	.	5	.	.	Atlas-SNP
MYH10	4628	hgsc.bcm.edu	hg19	17	8455422	8455422	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MYH10	NM_001256012	exon9	c.T861C	p.D287D	ACGTTCATCTTTT	.	83.0	4.0	203.0	0.0	.	148	.	.	Atlas-SNP
HS3ST3A1	9955	hgsc.bcm.edu	hg19	17	13504323	13504323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HS3ST3A1	NM_006042	exon1	c.C124A	p.L42M	CGGCCAGGCAGTA	.	56.0	4.0	114.0	0.0	.	39	.	.	Atlas-SNP
PIGL	9487	hgsc.bcm.edu	hg19	17	16137378	16137378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PIGL	NM_004278	exon2	c.A329G	p.D110G	TTATTGACAACAG	.	54.0	4.0	95.0	0.0	.	16	.	.	Atlas-SNP
MYO15A	51168	hgsc.bcm.edu	hg19	17	18047030	18047030	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MYO15A	NM_016239	exon26	c.A5966G	p.E1989G	TCTAGGAGCTGAG	.	162.0	7.0	174.0	0.0	.	268	.	.	Atlas-SNP
SUPT6H	6830	hgsc.bcm.edu	hg19	17	27014158	27014158	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SUPT6H	NM_003170	exon22	c.G2753T	p.R918L	TGGCCCGGCGCAT	.	97.0	4.0	100.0	0.0	.	165	.	.	Atlas-SNP
MYO18A	399687	hgsc.bcm.edu	hg19	17	27437088	27437088	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MYO18A	NM_078471	exon19	c.A3119G	p.K1040R	TGCAGCTTTGACT	.	64.0	4.0	77.0	0.0	.	217	.	.	Atlas-SNP
RAD51D	5892	hgsc.bcm.edu	hg19	17	33443890	33443890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RAD51D	NM_001142571	exon3	c.T311C	p.V104A	GTGCTGACCGCAG	.	114.0	5.0	103.0	0.0	.	53	.	.	Atlas-SNP
C17orf78	284099	hgsc.bcm.edu	hg19	17	35736083	35736083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C17orf78	NM_173625	exon3	c.A154G	p.T52A	ACTCACACAGAAA	.	85.0	4.0	99.0	0.0	.	23	.	.	Atlas-SNP
TOP2A	7153	hgsc.bcm.edu	hg19	17	38556308	38556308	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TOP2A	NM_001067	exon24	c.C3012T	p.D1004D	TACGTGGTCAAAA	.	57.0	4.0	57.0	0.0	.	124	.	.	Atlas-SNP
KRTAP1-5	83895	hgsc.bcm.edu	hg19	17	39183240	39183240	+	Silent	SNP	G	G	A	rs367586882		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KRTAP1-5	NM_031957	exon1	c.C168T	p.C56C	GGAGCTGCAGGTC	.	132.0	9.0	154.0	0.0	.	33	.	.	Atlas-SNP
KRT32	3882	hgsc.bcm.edu	hg19	17	39620667	39620667	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KRT32	NM_002278	exon4	c.G737T	p.G246V	CGGTCCCCAAGCT	.	96.0	4.0	98.0	0.0	.	57	.	.	Atlas-SNP
KRT35	3886	hgsc.bcm.edu	hg19	17	39637018	39637018	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KRT35	NM_002280	exon1	c.A332T	p.Y111F	TCCAGGTAGCCGG	.	113.0	6.0	115.0	0.0	.	58	.	.	Atlas-SNP
NAGLU	4669	hgsc.bcm.edu	hg19	17	40695160	40695160	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NAGLU	NM_000263	exon6	c.T1136C	p.L379P	GCCTCCTGGTTCT	.	92.0	4.0	88.0	0.0	.	36	.	.	Atlas-SNP
ASB16	92591	hgsc.bcm.edu	hg19	17	42255627	42255627	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ASB16	NM_080863	exon5	c.C1231T	p.L411L	AGGCAGCTGCAGC	.	54.0	4.0	77.0	0.0	.	34	.	.	Atlas-SNP
GOSR2	9570	hgsc.bcm.edu	hg19	17	45006918	45006918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GOSR2	NM_001012511	exon2	c.G62A	p.R21H	TGGGACGCCTGGA	.	49.0	23.0	70.0	0.0	.	38	.	.	Atlas-SNP
CDC27	996	hgsc.bcm.edu	hg19	17	45234463	45234463	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	CDC27_ENST00000531206,NS,carcinoma,0,2	CDC27	NM_001114091	exon7	c.T658G	p.S220A	AATTGGAAGATTC	.	49.0	4.0	53.0	0.0	.	337	.	.	Atlas-SNP
ITGB3	3690	hgsc.bcm.edu	hg19	17	45363647	45363647	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ITGB3	NM_000212	exon5	c.C636T	p.P212P	CTTGCCCATGTTT	.	86.0	4.0	101.0	0.0	.	157	.	.	Atlas-SNP
LUC7L3	51747	hgsc.bcm.edu	hg19	17	48823914	48823914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LUC7L3	NM_006107	exon9	c.G989A	p.R330Q	GAGATCGACGAAG	.	336.0	179.0	322.0	1.0	.	32	.	.	Atlas-SNP
NME1	4830	hgsc.bcm.edu	hg19	17	49237415	49237415	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NME1	NM_198175	exon4	c.C276T	p.Y92Y	GAAATACATGCAC	.	116.0	5.0	77.0	0.0	.	12	.	.	Atlas-SNP
EPX	8288	hgsc.bcm.edu	hg19	17	56280606	56280606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EPX	NM_000502	exon11	c.C1873T	p.P625S	CTTTTGCCGGGGG	.	84.0	5.0	120.0	0.0	.	95	.	.	Atlas-SNP
LPO	4025	hgsc.bcm.edu	hg19	17	56326538	56326538	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LPO	NM_006151	exon5	c.G443T	p.R148M	ATAACAGGTGGCG	.	61.0	4.0	95.0	0.0	.	73	.	.	Atlas-SNP
BCAS3	54828	hgsc.bcm.edu	hg19	17	59152380	59152380	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BCAS3	NM_001099432	exon21	c.A2174G	p.Q725R	TTTCCCAGGTAAA	.	93.0	4.0	84.0	0.0	.	90	.	.	Atlas-SNP
SMARCD2	6603	hgsc.bcm.edu	hg19	17	61914319	61914319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMARCD2	NM_001098426	exon4	c.G530A	p.R177Q	TCCATCCGCTTGC	.	92.0	4.0	103.0	0.0	.	29	.	.	Atlas-SNP
CACNG5	27091	hgsc.bcm.edu	hg19	17	64875093	64875093	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CACNG5	NM_145811	exon2	c.A200G	p.E67G	CAGGTGAGGAGCG	.	84.0	4.0	83.0	0.0	.	77	.	.	Atlas-SNP
BPTF	2186	hgsc.bcm.edu	hg19	17	65960451	65960451	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BPTF	NM_182641	exon25	c.C8385T	p.A2795A	GGATGCCATGACA	.	175.0	7.0	179.0	0.0	.	415	.	.	Atlas-SNP
CDC42EP4	23580	hgsc.bcm.edu	hg19	17	71281766	71281766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CDC42EP4	NM_012121	exon2	c.A874G	p.S292G	CGGGGCTGGGGGC	.	78.0	4.0	98.0	0.0	.	19	.	.	Atlas-SNP
SDK2	54549	hgsc.bcm.edu	hg19	17	71335078	71335078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SDK2	NM_001144952	exon45	c.G6167A	p.G2056E	TCACTTCCCTGGG	.	537.0	279.0	565.0	0.0	.	219	.	.	Atlas-SNP
TMEM104	54868	hgsc.bcm.edu	hg19	17	72786394	72786394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TMEM104	NM_017728	exon5	c.A305G	p.D102G	TCCGGGACAACTA	.	74.0	4.0	61.0	0.0	.	49	.	.	Atlas-SNP
ITGB4	3691	hgsc.bcm.edu	hg19	17	73738768	73738768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ITGB4	NM_001005731	exon25	c.A2888G	p.E963G	TGGTGGAGGCCAT	.	90.0	5.0	117.0	0.0	.	165	.	.	Atlas-SNP
UNC13D	201294	hgsc.bcm.edu	hg19	17	73840396	73840396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UNC13D	NM_199242	exon1	c.C23A	p.P8Q	TGCTGCGGATGGG	.	84.0	4.0	131.0	0.0	.	68	.	.	Atlas-SNP
FBF1	85302	hgsc.bcm.edu	hg19	17	73914288	73914288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FBF1	NM_001080542	exon20	c.A2156G	p.K719R	CGGTCCTTCAGCA	.	98.0	4.0	101.0	0.0	.	48	.	.	Atlas-SNP
ACOX1	51	hgsc.bcm.edu	hg19	17	73944528	73944528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ACOX1	NM_007292	exon13	c.T1739C	p.M580T	TCTGTCATGATGC	.	69.0	4.0	53.0	0.0	.	85	.	.	Atlas-SNP
JMJD6	23210	hgsc.bcm.edu	hg19	17	74716510	74716510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	JMJD6	NM_001081461	exon5	c.A1012G	p.I338V	AAGCTATCCCTGT	.	77.0	4.0	86.0	0.0	.	57	.	.	Atlas-SNP
RNF213	57674	hgsc.bcm.edu	hg19	17	78335538	78335538	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RNF213	NM_001256071	exon39	c.G11205A	p.L3735L	AGGACTGCCCAAG	.	70.0	4.0	54.0	0.0	.	766	.	.	Atlas-SNP
PDE6G	5148	hgsc.bcm.edu	hg19	17	79618688	79618688	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PDE6G	NM_002602	exon3	c.A174G	p.E58E	CAGGCCTTCCATT	.	87.0	4.0	102.0	0.0	.	9	.	.	Atlas-SNP
ZNF750	79755	hgsc.bcm.edu	hg19	17	80789773	80789773	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF750	NM_024702	exon2	c.C558T	p.N186N	AGTGGGGTTGTGT	.	86.0	4.0	96.0	0.0	.	60	.	.	Atlas-SNP
SMCHD1	23347	hgsc.bcm.edu	hg19	18	2688459	2688459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMCHD1	NM_015295	exon6	c.G706T	p.G236C	TATTTTGGTGTTG	.	73.0	4.0	145.0	0.0	.	88	.	.	Atlas-SNP
SMCHD1	23347	hgsc.bcm.edu	hg19	18	2694533	2694533	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMCHD1	NM_015295	exon8	c.T882C	p.D294D	CTCTGATTCTGTT	.	89.0	4.0	133.0	0.0	.	88	.	.	Atlas-SNP
L3MBTL4	91133	hgsc.bcm.edu	hg19	18	6244510	6244510	+	Silent	SNP	C	C	T	rs200697690		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	L3MBTL4	NM_173464	exon6	c.G297A	p.S99S	GAATACCGATGGA	.	60.0	4.0	148.0	0.0	.	87	.	C|0.999;T|0.001	Atlas-SNP
GNAL	2774	hgsc.bcm.edu	hg19	18	11881066	11881066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GNAL	NM_182978	exon12	c.C1309A	p.R437S	AACATCCGCAGGG	.	62.0	5.0	114.0	0.0	.	59	.	.	Atlas-SNP
RBBP8	5932	hgsc.bcm.edu	hg19	18	20572755	20572755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RBBP8	NM_203292	exon11	c.C965A	p.P322H	AATTACCTACTCG	.	81.0	4.0	130.0	0.0	.	138	.	.	Atlas-SNP
RBBP8	5932	hgsc.bcm.edu	hg19	18	20573367	20573367	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RBBP8	NM_203292	exon11	c.A1577G	p.K526R	CTTTGAAGACCAT	.	61.0	4.0	123.0	0.0	.	138	.	.	Atlas-SNP
C18orf8	29919	hgsc.bcm.edu	hg19	18	21109173	21109173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C18orf8	NM_013326	exon15	c.C1327T	p.P443S	AGCAGCCCGCTCC	.	35.0	4.0	60.0	0.0	.	58	.	.	Atlas-SNP
ANKRD29	147463	hgsc.bcm.edu	hg19	18	21214039	21214039	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ANKRD29	NM_173505	exon5	c.A405G	p.G135G	GTTTGCTCCGTGC	.	104.0	5.0	169.0	0.0	.	24	.	.	Atlas-SNP
TAF4B	6875	hgsc.bcm.edu	hg19	18	23847518	23847518	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TAF4B	NM_005640	exon3	c.A528G	p.T176T	AGTGACACCTGTT	.	89.0	4.0	126.0	0.0	.	71	.	.	Atlas-SNP
TRAPPC8	22878	hgsc.bcm.edu	hg19	18	29437916	29437916	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TRAPPC8	NM_014939	exon20	c.T2775C	p.L925L	ACAGAGAAGCCCT	.	82.0	4.0	146.0	0.0	.	126	.	.	Atlas-SNP
TRAPPC8	22878	hgsc.bcm.edu	hg19	18	29497605	29497605	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TRAPPC8	NM_014939	exon3	c.C378A	p.Y126X	TTCTCTGTAAGAC	.	66.0	4.0	136.0	0.0	.	126	.	.	Atlas-SNP
MEP1B	4225	hgsc.bcm.edu	hg19	18	29788190	29788190	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MEP1B	NM_005925	exon9	c.C875G	p.P292R	AGGTTCCCAGGGG	.	99.0	27.0	154.0	0.0	.	54	.	.	Atlas-SNP
ZNF396	252884	hgsc.bcm.edu	hg19	18	32953458	32953458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF396	NM_145756	exon3	c.A524G	p.Q175R	GCTCCCTGGAGCT	.	130.0	6.0	275.0	0.0	.	28	.	.	Atlas-SNP
SLC14A2	8170	hgsc.bcm.edu	hg19	18	43204717	43204717	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC14A2	NM_001242692	exon3	c.T88C	p.W30R	CCGAGCTGGCCCT	.	68.0	5.0	91.0	0.0	.	121	.	.	Atlas-SNP
SLC14A1	6563	hgsc.bcm.edu	hg19	18	43329905	43329905	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC14A1	NM_001146037	exon9	c.A1327G	p.S443G	GTGGAAAGCCCTT	.	93.0	4.0	143.0	0.0	.	84	.	.	Atlas-SNP
MYO5B	4645	hgsc.bcm.edu	hg19	18	47421462	47421462	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MYO5B	NM_001080467	exon22	c.A2894G	p.E965G	ACCAGCTCCTTCT	.	78.0	4.0	145.0	0.0	.	178	.	.	Atlas-SNP
TCF4	6925	hgsc.bcm.edu	hg19	18	52937094	52937094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TCF4	NM_001243226	exon12	c.C1196T	p.T399M	GGAGGCGTACAGG	.	96.0	4.0	175.0	0.0	.	178	.	.	Atlas-SNP
ST8SIA3	51046	hgsc.bcm.edu	hg19	18	55027274	55027274	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ST8SIA3	NM_015879	exon4	c.T909C	p.I303I	AGGTATTCTTATG	.	79.0	4.0	172.0	0.0	.	73	.	.	Atlas-SNP
CDH20	28316	hgsc.bcm.edu	hg19	18	59221741	59221741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	CDH20,NS,carcinoma,0,1	CDH20	NM_031891	exon11	c.C2219A	p.P740Q	GGGCACCGCCCTT	.	45.0	2.0	95.0	0.0	.	117	.	.	Atlas-SNP
SERPINB2	5055	hgsc.bcm.edu	hg19	18	61569075	61569075	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SERPINB2	NM_002575	exon6	c.G637T	p.E213X	CCATTTGAGAAGA	.	91.0	4.0	101.0	0.0	.	63	.	.	Atlas-SNP
DSEL	92126	hgsc.bcm.edu	hg19	18	65178261	65178261	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DSEL	NM_032160	exon2	c.A3615G	p.E1205E	GATGTTTTCAATT	.	120.0	6.0	242.0	0.0	.	196	.	.	Atlas-SNP
ZNF407	55628	hgsc.bcm.edu	hg19	18	72516010	72516010	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF407	NM_001146190	exon4	c.T4968C	p.C1656C	TCTTTGTGAGCAC	.	96.0	4.0	121.0	0.0	.	231	.	.	Atlas-SNP
MIER2	54531	hgsc.bcm.edu	hg19	19	327889	327889	+	Missense_Mutation	SNP	T	T	C	rs376851727		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MIER2	NM_017550	exon4	c.A344G	p.N115S	GGGAGGTTCGGGG	.	113.0	5.0	146.0	0.0	.	51	.	.	Atlas-SNP
BSG	682	hgsc.bcm.edu	hg19	19	582316	582316	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BSG	NM_001728	exon7	c.C1080A	p.A360A	CGACGCCGGCTCT	.	74.0	4.0	118.0	0.0	.	48	.	.	Atlas-SNP
KISS1R	84634	hgsc.bcm.edu	hg19	19	917723	917723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KISS1R	NM_032551	exon1	c.G221A	p.R74Q	CGATGCGGACCGT	.	94.0	4.0	123.0	0.0	.	10	.	.	Atlas-SNP
IZUMO4	113177	hgsc.bcm.edu	hg19	19	2096945	2096945	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IZUMO4	NM_001039846	exon1	c.A1G	p.M1V	ACGGGCATGGCCC	.	32.0	5.0	39.0	0.0	.	25	.	.	Atlas-SNP
GIPC3	126326	hgsc.bcm.edu	hg19	19	3586866	3586866	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GIPC3	NM_133261	exon3	c.A466G	p.S156G	GGTGACAGCATCG	.	113.0	5.0	172.0	0.0	.	27	.	.	Atlas-SNP
APBA3	9546	hgsc.bcm.edu	hg19	19	3754233	3754233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	APBA3	NM_004886	exon4	c.C722T	p.T241M	ATGCGCGTGCTGG	.	69.0	4.0	76.0	0.0	.	28	.	.	Atlas-SNP
PLIN5	440503	hgsc.bcm.edu	hg19	19	4531823	4531823	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLIN5	NM_001013706	exon3	c.G72A	p.Q24Q	CACACGCTGCACC	.	80.0	5.0	88.0	0.0	.	27	.	.	Atlas-SNP
DPP9	91039	hgsc.bcm.edu	hg19	19	4694679	4694679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	DPP9,NS,carcinoma,0,1	DPP9	NM_139159	exon13	c.G1510T	p.G504W	CTTCCCCGGGGCT	.	74.0	3.0	73.0	0.0	.	59	.	.	Atlas-SNP
FEM1A	55527	hgsc.bcm.edu	hg19	19	4792908	4792908	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FEM1A	NM_018708	exon1	c.T1042C	p.Y348H	CTGGCCTATGACT	.	72.0	5.0	81.0	0.0	.	41	.	.	Atlas-SNP
DENND1C	79958	hgsc.bcm.edu	hg19	19	6470311	6470311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DENND1C	NM_024898	exon18	c.C1357A	p.R453S	CCGAGCGGTACAT	.	123.0	5.0	143.0	0.0	.	93	.	.	Atlas-SNP
FBN3	84467	hgsc.bcm.edu	hg19	19	8161405	8161405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FBN3	NM_032447	exon43	c.G5462A	p.C1821Y	TCCATGCAGTCAC	.	88.0	4.0	77.0	0.0	.	300	.	.	Atlas-SNP
OR1M1	125963	hgsc.bcm.edu	hg19	19	9204494	9204494	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OR1M1	NM_001004456	exon1	c.A574G	p.T192A	ACGGACACCTCTG	.	61.0	5.0	65.0	0.0	.	52	.	.	Atlas-SNP
ZNF317	57693	hgsc.bcm.edu	hg19	19	9271853	9271853	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF317	NM_020933	exon7	c.T1532C	p.F511S	AGGCCTTCAGGAA	.	70.0	5.0	65.0	0.0	.	61	.	.	Atlas-SNP
OLFM2	93145	hgsc.bcm.edu	hg19	19	9968053	9968053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OLFM2	NM_058164	exon4	c.C466A	p.L156I	CGGAGAGATTCCT	.	62.0	4.0	89.0	0.0	.	42	.	.	Atlas-SNP
KEAP1	9817	hgsc.bcm.edu	hg19	19	10610159	10610159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KEAP1	NM_012289	exon2	c.C551A	p.A184D	CCGATGGCATTGC	.	88.0	5.0	93.0	0.0	.	182	.	.	Atlas-SNP
ZNF653	115950	hgsc.bcm.edu	hg19	19	11606896	11606896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF653	NM_138783	exon3	c.T428C	p.L143P	TCCGCCAGGTGCG	.	74.0	4.0	80.0	0.0	.	48	.	.	Atlas-SNP
BEST2	54831	hgsc.bcm.edu	hg19	19	12866497	12866497	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BEST2	NM_017682	exon6	c.T783C	p.A261A	CCCGGCTCAGGGT	.	150.0	7.0	168.0	0.0	.	35	.	.	Atlas-SNP
CC2D1A	54862	hgsc.bcm.edu	hg19	19	14024289	14024289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CC2D1A	NM_017721	exon6	c.G586A	p.A196T	CCAGTGGCCATAG	.	120.0	6.0	139.0	0.0	.	67	.	.	Atlas-SNP
LPHN1	22859	hgsc.bcm.edu	hg19	19	14274128	14274128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LPHN1	NM_001008701	exon6	c.C500A	p.P167Q	TGCAGCGGGTCCT	.	77.0	4.0	135.0	0.0	.	107	.	.	Atlas-SNP
NOTCH3	4854	hgsc.bcm.edu	hg19	19	15297800	15297800	+	Splice_Site	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NOTCH3	NM_000435	exon13	c.1841-1G>T	.	TCACACCTAGGGG	.	49.0	4.0	51.0	0.0	.	340	.	.	Atlas-SNP
SIN3B	23309	hgsc.bcm.edu	hg19	19	16977294	16977294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SIN3B	NM_015260	exon13	c.A1829G	p.N610S	CTGTGAACTTCAA	.	92.0	4.0	74.0	0.0	.	90	.	.	Atlas-SNP
BABAM1	29086	hgsc.bcm.edu	hg19	19	17384927	17384927	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BABAM1	NM_014173	exon5	c.G477A	p.L159L	TGGCCTGACCTCC	.	82.0	4.0	90.0	0.0	.	14	.	.	Atlas-SNP
MAP1S	55201	hgsc.bcm.edu	hg19	19	17837556	17837556	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MAP1S	NM_018174	exon5	c.C1363T	p.R455X	TTCCTGCGAGAGC	.	46.0	10.0	49.0	0.0	.	74	.	.	Atlas-SNP
SLC5A5	6528	hgsc.bcm.edu	hg19	19	17988801	17988801	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC5A5	NM_000453	exon7	c.T868C	p.F290L	GGCCTGTTCCTGA	.	75.0	4.0	82.0	0.0	.	67	.	.	Atlas-SNP
COMP	1311	hgsc.bcm.edu	hg19	19	18896349	18896349	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COMP	NM_000095	exon15	c.A1676G	p.E559G	ACGATCTCCCTTC	.	156.0	7.0	136.0	0.0	.	62	.	.	Atlas-SNP
DDX49	54555	hgsc.bcm.edu	hg19	19	19035101	19035101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DDX49	NM_019070	exon7	c.A836G	p.H279R	CTCTGCACTCCAT	.	145.0	6.0	188.0	0.0	.	37	.	.	Atlas-SNP
ZNF682	91120	hgsc.bcm.edu	hg19	19	20117129	20117129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	ZNF682,NS,carcinoma,0,1	ZNF682	NM_033196	exon4	c.G1182T	p.E394D	GGGTTTCTCTCCA	.	45.0	2.0	33.0	0.0	.	51	.	.	Atlas-SNP
ZNF486	90649	hgsc.bcm.edu	hg19	19	20308359	20308359	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF486	NM_052852	exon4	c.C840A	p.T280T	CTATACCCTTACT	.	76.0	5.0	74.0	0.0	.	74	.	.	Atlas-SNP
ZNF208	7757	hgsc.bcm.edu	hg19	19	22156027	22156027	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF208	NM_007153	exon4	c.T1809C	p.H603H	ACCAGTATGAATT	.	62.0	31.0	63.0	0.0	.	817	.	.	Atlas-SNP
ZNF91	7644	hgsc.bcm.edu	hg19	19	23542731	23542731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF91	NM_003430	exon4	c.C3050A	p.T1017N	TCTCCAGTGTGCA	.	88.0	4.0	72.0	0.0	.	349	.	.	Atlas-SNP
ZNF675	171392	hgsc.bcm.edu	hg19	19	23836866	23836866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.,1	ZNF675	NM_138330	exon4	c.G869A	p.G290D	GCTTTGCCACATT	.	64.0	4.0	44.0	1.0	.	88	.	.	Atlas-SNP
CEP89	84902	hgsc.bcm.edu	hg19	19	33370210	33370210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CEP89	NM_032816	exon19	c.A2210G	p.Q737R	GTGTCCTGGAGAA	.	149.0	6.0	126.0	0.0	.	82	.	.	Atlas-SNP
WDR88	126248	hgsc.bcm.edu	hg19	19	33647326	33647326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WDR88	NM_173479	exon7	c.C875A	p.S292Y	CAAGCTCCTGGGA	.	91.0	4.0	85.0	0.0	.	50	.	.	Atlas-SNP
ZNF302	55900	hgsc.bcm.edu	hg19	19	35173713	35173713	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF302	NM_018443	exon3	c.C41G	p.S14C	ACTTCTCTCATGA	.	281.0	89.0	296.0	0.0	.	27	.	.	Atlas-SNP
CD22	933	hgsc.bcm.edu	hg19	19	35835730	35835730	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CD22	NM_001185100	exon10	c.2036-2A>G	.	CCACCCAGATAGC	.	78.0	4.0	82.0	0.0	.	129	.	.	Atlas-SNP
ZBTB32	27033	hgsc.bcm.edu	hg19	19	36206306	36206306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZBTB32	NM_014383	exon2	c.C778A	p.P260T	GGCCAGCCTGCCC	.	34.0	8.0	80.0	0.0	.	33	.	.	Atlas-SNP
ZNF461	92283	hgsc.bcm.edu	hg19	19	37134755	37134755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF461	NM_153257	exon5	c.A242G	p.K81R	CAAGTTTTCCATG	.	92.0	4.0	96.0	0.0	.	73	.	.	Atlas-SNP
ZNF850	342892	hgsc.bcm.edu	hg19	19	37239944	37239944	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF850	NM_001193552	exon5	c.T1998C	p.I666I	AGTGTGAATTCTG	.	18.0	4.0	23.0	0.0	.	14	.	.	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	39016021	39016021	+	Missense_Mutation	SNP	G	G	T	rs369422480	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RYR1	NM_000540	exon71	c.G10505T	p.R3502L	GGGACCGGTACTC	.	98.0	4.0	102.0	0.0	.	708	.	.	Atlas-SNP
IFNL1	282618	hgsc.bcm.edu	hg19	19	39788656	39788656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_172140	exon3	c.T302C	p.V101A	TGAAGGTCCTGGA	.	117.0	5.0	114.0	0.0	.	.	.	.	Atlas-SNP
FCGBP	8857	hgsc.bcm.edu	hg19	19	40433822	40433822	+	Silent	SNP	G	G	A	rs375117067		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FCGBP	NM_003890	exon2	c.C447T	p.P149P	GGTGCCGGGGGGT	.	60.0	4.0	82.0	0.0	.	416	.	.	Atlas-SNP
PSMC4	5704	hgsc.bcm.edu	hg19	19	40480515	40480515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PSMC4	NM_006503	exon5	c.T554C	p.L185P	TCCCGCTCACGCA	.	62.0	4.0	94.0	0.0	.	48	.	.	Atlas-SNP
CNTD2	79935	hgsc.bcm.edu	hg19	19	40732473	40732473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CNTD2	NM_024877	exon1	c.T76C	p.S26P	AAGGAGAGGGCCT	.	112.0	7.0	121.0	0.0	.	22	.	.	Atlas-SNP
AKT2	208	hgsc.bcm.edu	hg19	19	40761108	40761108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AKT2	NM_001626	exon4	c.A244G	p.T82A	TGACTGTGGTCCA	.	121.0	6.0	138.0	0.0	.	53	.	.	Atlas-SNP
C19orf47	126526	hgsc.bcm.edu	hg19	19	40832372	40832372	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C19orf47	NM_001256440	exon7	c.A572G	p.E191G	CTCTCCTCCTCCC	.	76.0	4.0	93.0	0.0	.	61	.	.	Atlas-SNP
SHKBP1	92799	hgsc.bcm.edu	hg19	19	41094616	41094616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SHKBP1	NM_138392	exon14	c.G1423T	p.A475S	CCACTCGCTTCCT	.	88.0	5.0	123.0	0.0	.	68	.	.	Atlas-SNP
ETHE1	23474	hgsc.bcm.edu	hg19	19	44012185	44012185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ETHE1	NM_014297	exon6	c.A623G	p.E208G	GTCCTCTCCTCCT	.	79.0	4.0	85.0	0.0	.	7	.	.	Atlas-SNP
IRGC	56269	hgsc.bcm.edu	hg19	19	44223753	44223753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IRGC	NM_019612	exon2	c.C1043T	p.S348F	TCTATTCCCAGTC	.	63.0	4.0	93.0	0.0	.	67	.	.	Atlas-SNP
ZNF284	342909	hgsc.bcm.edu	hg19	19	44590982	44590982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF284	NM_001037813	exon5	c.G1351A	p.G451R	CACACGGGAGAGA	.	154.0	52.0	168.0	0.0	.	38	.	.	Atlas-SNP
ZNF227	7770	hgsc.bcm.edu	hg19	19	44740282	44740282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF227	NM_182490	exon6	c.C1699A	p.Q567K	CTACACCAAGTAA	.	142.0	6.0	113.0	0.0	.	62	.	.	Atlas-SNP
ZNF229	7772	hgsc.bcm.edu	hg19	19	44933201	44933201	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF229	NM_014518	exon6	c.A1755G	p.S585S	AAGGTCTGAATTC	.	85.0	4.0	95.0	0.0	.	123	.	.	Atlas-SNP
ZNF180	7733	hgsc.bcm.edu	hg19	19	44982061	44982061	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF180	NM_013256	exon5	c.A637G	p.I213V	TTCTTATGGGTAT	.	95.0	4.0	96.0	0.0	.	103	.	.	Atlas-SNP
OPA3	80207	hgsc.bcm.edu	hg19	19	46032507	46032507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OPA3	NM_001017989	exon2	c.T350C	p.V117A	CTGGCAACACGTC	.	100.0	4.0	82.0	0.0	.	19	.	.	Atlas-SNP
DMPK	1760	hgsc.bcm.edu	hg19	19	46280628	46280628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DMPK	NM_001081563	exon7	c.A1133G	p.D378G	ACCAAGTCGAAGT	.	87.0	4.0	101.0	0.0	.	74	.	.	Atlas-SNP
ARHGAP35	2909	hgsc.bcm.edu	hg19	19	47423542	47423542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_004491	exon1	c.A1610G	p.Q537R	AGCTCCAAGCAGA	.	92.0	5.0	68.0	0.0	.	.	.	.	Atlas-SNP
TULP2	7288	hgsc.bcm.edu	hg19	19	49384335	49384335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TULP2	NM_003323	exon13	c.C1496T	p.T499I	TCCATGGTGAATG	.	82.0	4.0	72.0	0.0	.	60	.	.	Atlas-SNP
PRMT1	3276	hgsc.bcm.edu	hg19	19	50185170	50185170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PRMT1	NM_001536	exon4	c.A196G	p.M66V	TAGGAGATGCTGA	.	85.0	4.0	94.0	0.0	.	31	.	.	Atlas-SNP
SIGLEC7	27036	hgsc.bcm.edu	hg19	19	51648215	51648215	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SIGLEC7	NM_014385	exon3	c.A759G	p.T253T	AGGCACAGGTAGG	.	88.0	4.0	73.0	0.0	.	74	.	.	Atlas-SNP
SIGLEC10	89790	hgsc.bcm.edu	hg19	19	51919307	51919307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SIGLEC10	NM_001171157	exon5	c.T869C	p.L290P	TTCTGCAGGACCC	.	82.0	4.0	82.0	0.0	.	112	.	.	Atlas-SNP
ZNF470	388566	hgsc.bcm.edu	hg19	19	57089654	57089654	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF470	NM_001001668	exon6	c.A1857G	p.K619K	TGAGAAACCTTAT	.	90.0	5.0	52.0	0.0	.	103	.	.	Atlas-SNP
ZNF304	57343	hgsc.bcm.edu	hg19	19	57867978	57867978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF304	NM_020657	exon3	c.G741T	p.E247D	TGCTGAGGTGAGA	.	94.0	4.0	92.0	0.0	.	74	.	.	Atlas-SNP
ZNF211	10520	hgsc.bcm.edu	hg19	19	58153448	58153448	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF211	NM_001265597	exon5	c.A1789G	p.T597A	GTTCACACGGGAA	.	95.0	4.0	107.0	0.0	.	78	.	.	Atlas-SNP
ZSCAN1	284312	hgsc.bcm.edu	hg19	19	58564802	58564802	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZSCAN1	NM_182572	exon6	c.C610A	p.R204R	GGGTCCCGGGCCC	.	65.0	4.0	61.0	0.0	.	102	.	.	Atlas-SNP
ZNF324	25799	hgsc.bcm.edu	hg19	19	58982592	58982592	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	ZNF324,colon,carcinoma,0,1	ZNF324	NM_014347	exon4	c.G733T	p.E245X	TGGGACGAGCTGG	.	180.0	52.0	170.0	0.0	.	46	.	.	Atlas-SNP
SLC27A5	10998	hgsc.bcm.edu	hg19	19	59011753	59011753	+	Missense_Mutation	SNP	G	G	A	rs371196997		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC27A5	NM_012254	exon6	c.C1421T	p.A474V	GGCTCCGCCGCCT	.	72.0	4.0	83.0	0.0	.	58	.	.	Atlas-SNP
MZF1	7593	hgsc.bcm.edu	hg19	19	59082638	59082638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MZF1	NM_198055	exon2	c.C119A	p.P40H	GCTTCAGGGCCTG	.	90.0	4.0	76.0	0.0	.	37	.	.	Atlas-SNP
TGM3	7053	hgsc.bcm.edu	hg19	20	2290970	2290970	+	Missense_Mutation	SNP	C	C	T	rs139117716	bycluster	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TGM3	NM_003245	exon3	c.C328T	p.R110W	ATAGGACGGTACA	.	131.0	51.0	143.0	0.0	.	105	.	C|1.000;T|0.000	Atlas-SNP
VPS16	64601	hgsc.bcm.edu	hg19	20	2845074	2845074	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VPS16	NM_022575	exon18	c.G1784T	p.R595L	CCCTTCGGAATCA	.	74.0	4.0	81.0	0.0	.	76	.	.	Atlas-SNP
LAMP5	24141	hgsc.bcm.edu	hg19	20	9496099	9496099	+	Splice_Site	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001199897	exon2	c.65-1G>T	.	TCCGCAGATACAA	.	96.0	5.0	73.0	0.0	.	.	.	.	Atlas-SNP
RRBP1	6238	hgsc.bcm.edu	hg19	20	17596120	17596120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RRBP1	NM_004587	exon23	c.G2707T	p.G903C	GGGGGCCGGCTGT	.	55.0	4.0	76.0	0.0	.	157	.	.	Atlas-SNP
GGTLC1	92086	hgsc.bcm.edu	hg19	20	23967085	23967085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GGTLC1	NM_178311	exon2	c.C164T	p.T55I	TTGATGGTGCTGG	.	54.0	22.0	53.0	0.0	.	37	.	.	Atlas-SNP
BPIFB3	359710	hgsc.bcm.edu	hg19	20	31657761	31657761	+	Missense_Mutation	SNP	G	G	T	rs372182848	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_182658	exon11	c.G1217T	p.R406L	TGGAACGGTAACT	.	98.0	4.0	80.0	0.0	.	.	.	.	Atlas-SNP
RBM12	10137	hgsc.bcm.edu	hg19	20	34240516	34240516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RBM12	NM_001198840	exon2	c.C2729T	p.A910V	GCTGTGGCTTCAT	.	145.0	6.0	131.0	0.0	.	93	.	.	Atlas-SNP
KIAA1755	85449	hgsc.bcm.edu	hg19	20	36841909	36841909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA1755	NM_001029864	exon14	c.G3138A	p.M1046I	CAGGAGCATCCGG	.	68.0	4.0	81.0	0.0	.	145	.	.	Atlas-SNP
L3MBTL1	26013	hgsc.bcm.edu	hg19	20	42161426	42161426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	L3MBTL1	NM_032107	exon12	c.T1232C	p.L411P	CACCCCTGGGCTT	.	125.0	5.0	159.0	0.0	.	105	.	.	Atlas-SNP
SLPI	6590	hgsc.bcm.edu	hg19	20	43882355	43882355	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLPI	NM_003064	exon2	c.T105C	p.C35C	AGGAGGACAGACT	.	136.0	6.0	102.0	0.0	.	13	.	.	Atlas-SNP
MMP9	4318	hgsc.bcm.edu	hg19	20	44640845	44640845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MMP9	NM_004994	exon7	c.A1067G	p.K356R	TGGGTAAGGAGTA	.	63.0	4.0	82.0	0.0	.	84	.	.	Atlas-SNP
SLC13A3	64849	hgsc.bcm.edu	hg19	20	45239191	45239191	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	SLC13A3_ENST00000339636,NS,carcinoma,0,1	SLC13A3	NM_022829	exon3	c.C435A	p.T145T	GGAGGCGGTGTTG	.	68.0	3.0	88.0	0.0	.	88	.	.	Atlas-SNP
PCK1	5105	hgsc.bcm.edu	hg19	20	56137172	56137172	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PCK1	NM_002591	exon3	c.C270T	p.S90S	CGAAAGCAAGACG	.	95.0	5.0	117.0	0.0	.	95	.	.	Atlas-SNP
PMEPA1	56937	hgsc.bcm.edu	hg19	20	56228121	56228121	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	PMEPA1,NS,carcinoma,0,1	PMEPA1	NM_020182	exon3	c.G286T	p.E96X	TGCTCTCCGAGGG	.	109.0	35.0	83.0	0.0	.	29	.	.	Atlas-SNP
GNAS	2778	hgsc.bcm.edu	hg19	20	57428565	57428565	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GNAS	NM_080425	exon1	c.A245G	p.N82S	TCCTCAACCCGGC	.	81.0	5.0	91.0	0.0	.	867	.	.	Atlas-SNP
ZNF831	128611	hgsc.bcm.edu	hg19	20	57768791	57768791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF831	NM_178457	exon1	c.T2717C	p.L906P	CCCCACTGCATCC	.	92.0	4.0	91.0	0.0	.	287	.	.	Atlas-SNP
MRGBP	55257	hgsc.bcm.edu	hg19	20	61428015	61428015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_018270	exon1	c.A140G	p.K47R	GCCACAAGCCCGT	.	53.0	4.0	51.0	0.0	.	.	.	.	Atlas-SNP
DIDO1	11083	hgsc.bcm.edu	hg19	20	61511261	61511261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DIDO1	NM_001193369	exon16	c.C6047A	p.P2016Q	ACCTGCGGGGCCT	.	74.0	4.0	72.0	0.0	.	321	.	.	Atlas-SNP
SLC17A9	63910	hgsc.bcm.edu	hg19	20	61597040	61597040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC17A9	NM_022082	exon10	c.G1024T	p.A342S	GTCTTTGCATCAG	.	97.0	4.0	98.0	0.0	.	54	.	.	Atlas-SNP
ADAMTS5	11096	hgsc.bcm.edu	hg19	21	28296469	28296469	+	Missense_Mutation	SNP	G	G	A	rs368781824		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	ADAMTS5,NS,NS,0,1	ADAMTS5	NM_007038	exon8	c.C2696T	p.T899M	TGCACCGTTCTGG	.	47.0	2.0	45.0	0.0	.	184	.	.	Atlas-SNP
KCNJ15	3772	hgsc.bcm.edu	hg19	21	39672189	39672189	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KCNJ15	NM_002243	exon4	c.A1006G	p.T336A	CGGAAAAGCCCAG	.	150.0	6.0	167.0	0.0	.	43	.	.	Atlas-SNP
BRWD1	54014	hgsc.bcm.edu	hg19	21	40568902	40568902	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BRWD1	NM_018963	exon41	c.G6093A	p.R2031R	GGTATGCCTGTGC	.	113.0	5.0	139.0	0.0	.	325	.	.	Atlas-SNP
TFF3	7033	hgsc.bcm.edu	hg19	21	43733711	43733711	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TFF3	NM_003226	exon2	c.A155G	p.D52G	ACCCTGTCCTTGG	.	70.0	4.0	111.0	0.0	.	9	.	.	Atlas-SNP
SIK1	150094	hgsc.bcm.edu	hg19	21	44839238	44839238	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SIK1	NM_173354	exon10	c.C1240T	p.Q414X	CCCACTGCAGCGA	.	100.0	4.0	125.0	0.0	.	65	.	.	Atlas-SNP
MCM3AP	8888	hgsc.bcm.edu	hg19	21	47704423	47704423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MCM3AP	NM_003906	exon1	c.G778A	p.G260S	GTTCGCCCAAAAC	.	99.0	5.0	103.0	0.0	.	146	.	.	Atlas-SNP
DIP2A	23181	hgsc.bcm.edu	hg19	21	47983806	47983806	+	Silent	SNP	C	C	A	rs201790767	bycluster;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DIP2A	NM_015151	exon35	c.C4125A	p.T1375T	ACACACCGAGACC	.	85.0	4.0	105.0	0.0	.	332	.	C|0.996;G|0.004	Atlas-SNP
TSSK2	23617	hgsc.bcm.edu	hg19	22	19119730	19119730	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TSSK2	NM_053006	exon1	c.A818G	p.Q273R	GGCTGCAGCCCCC	.	80.0	4.0	94.0	0.0	.	29	.	.	Atlas-SNP
SLC25A1	6576	hgsc.bcm.edu	hg19	22	19164138	19164138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC25A1	NM_001256534	exon6	c.A721G	p.S241G	AGACACTGGCTGC	.	99.0	4.0	118.0	0.0	.	14	.	.	Atlas-SNP
TANGO2	128989	hgsc.bcm.edu	hg19	22	20043483	20043483	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	C22orf25,colon,carcinoma,0,1	TANGO2	NM_152906	exon6	c.T398G	p.V133G	GAGACGTCATTTG	.	118.0	5.0	126.0	0.0	.	4	.	.	Atlas-SNP
KLHL22	84861	hgsc.bcm.edu	hg19	22	20796519	20796519	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KLHL22	NM_032775	exon7	c.C1746T	p.S582S	TGAGATGGAGTTG	.	97.0	4.0	129.0	0.0	.	52	.	.	Atlas-SNP
SLC2A11	66035	hgsc.bcm.edu	hg19	22	24217341	24217341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC2A11	NM_030807	exon5	c.T340C	p.S114P	GTGGTGTCAGCAG	.	77.0	4.0	76.0	0.0	.	32	.	.	Atlas-SNP
UPB1	51733	hgsc.bcm.edu	hg19	22	24896100	24896100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UPB1	NM_016327	exon2	c.T130C	p.F44L	GAAGCTTTCGAAG	.	36.0	4.0	32.0	0.0	.	60	.	.	Atlas-SNP
CRYBB1	1414	hgsc.bcm.edu	hg19	22	26997873	26997873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	CRYBB1,NS,carcinoma,0,1	CRYBB1	NM_001887	exon5	c.G545T	p.R182L	CCCACGCGGTCAC	.	56.0	3.0	48.0	0.0	.	49	.	.	Atlas-SNP
THOC5	8563	hgsc.bcm.edu	hg19	22	29939435	29939435	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	THOC5	NM_001002878	exon5	c.A337G	p.R113G	GATCTCTTCCTTT	.	182.0	8.0	109.0	0.0	.	58	.	.	Atlas-SNP
SEC14L6	730005	hgsc.bcm.edu	hg19	22	30921660	30921660	+	Silent	SNP	G	G	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SEC14L6	NM_001193336	exon10	c.C849G	p.S283S	GCCCACGGACCTC	.	127.0	19.0	110.0	0.0	.	6	.	.	Atlas-SNP
SEC14L6	730005	hgsc.bcm.edu	hg19	22	30928561	30928561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SEC14L6	NM_001193336	exon5	c.T374C	p.F125S	CTCCGGAAGCTGT	.	77.0	4.0	78.0	0.0	.	6	.	.	Atlas-SNP
RBFOX2	23543	hgsc.bcm.edu	hg19	22	36152191	36152191	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RBFOX2	NM_001082578	exon11	c.T1110C	p.G370G	AACCACACTGCAG	.	88.0	4.0	88.0	0.0	.	62	.	.	Atlas-SNP
TRIOBP	11078	hgsc.bcm.edu	hg19	22	38165281	38165281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TRIOBP	NM_001039141	exon21	c.C6748A	p.R2250S	CATGGCCGCCTGT	.	70.0	4.0	75.0	0.0	.	262	.	.	Atlas-SNP
MGAT3	4248	hgsc.bcm.edu	hg19	22	39883658	39883658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MGAT3	NM_002409	exon2	c.G306T	p.E102D	GCCCGAGGACACC	.	152.0	7.0	185.0	0.0	.	65	.	.	Atlas-SNP
MCAT	27349	hgsc.bcm.edu	hg19	22	43529443	43529443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MCAT	NM_173467	exon4	c.C779T	p.T260I	ATCCTGGTGCGTC	.	69.0	4.0	91.0	0.0	.	26	.	.	Atlas-SNP
SCUBE1	80274	hgsc.bcm.edu	hg19	22	43610121	43610121	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SCUBE1	NM_173050	exon16	c.T2028C	p.G676G	GCGGGCACCAGGC	.	107.0	5.0	123.0	0.0	.	105	.	.	Atlas-SNP
PRR5-ARHGAP8	553158	hgsc.bcm.edu	hg19	22	45218348	45218348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PRR5-ARHGAP8	NM_181334	exon9	c.C850T	p.R284W	GTTTTGCGGTAAG	.	112.0	5.0	126.0	0.0	.	53	.	.	Atlas-SNP
PKDREJ	10343	hgsc.bcm.edu	hg19	22	46657241	46657241	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PKDREJ	NM_006071	exon1	c.A1979G	p.Q660R	GTCACCTGAGAAA	.	70.0	4.0	74.0	0.0	.	195	.	.	Atlas-SNP
CELSR1	9620	hgsc.bcm.edu	hg19	22	46930936	46930936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CELSR1	NM_014246	exon1	c.C2132A	p.A711D	TCGCGGGCCTGCA	.	50.0	4.0	98.0	0.0	.	242	.	.	Atlas-SNP
IL17REL	400935	hgsc.bcm.edu	hg19	22	50439203	50439203	+	Silent	SNP	G	G	T	rs143091006	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IL17REL	NM_001001694	exon5	c.C199A	p.R67R	GCTGCCGGTGGGA	.	96.0	5.0	99.0	0.0	.	21	.	G|0.998;A|0.002	Atlas-SNP
PANX2	56666	hgsc.bcm.edu	hg19	22	50615968	50615968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	PANX2_ENST00000395842,colon,carcinoma,0,2	PANX2	NM_052839	exon2	c.G827T	p.R276L	CGGTGCGCGTGAG	.	28.0	2.0	40.0	0.0	.	69	.	.	Atlas-SNP
MID1	4281	hgsc.bcm.edu	hg19	X	10437803	10437803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MID1	NM_001193278	exon7	c.G1372A	p.D458N	ACTCATCATCGGA	.	85.0	4.0	89.0	0.0	.	72	.	.	Atlas-SNP
NHS	4810	hgsc.bcm.edu	hg19	X	17745288	17745288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NHS	NM_198270	exon6	c.C2999A	p.P1000Q	CATCTCCATCAAG	.	73.0	4.0	104.0	0.0	.	302	.	.	Atlas-SNP
PPEF1	5475	hgsc.bcm.edu	hg19	X	18797263	18797263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PPEF1	NM_152226	exon10	c.G694T	p.G232W	AACAGAGGGAACC	.	91.0	4.0	84.0	0.0	.	89	.	.	Atlas-SNP
SMPX	23676	hgsc.bcm.edu	hg19	X	21761892	21761892	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMPX	NM_014332	exon3	c.A108G	p.K36K	ACATTCTTTTCTT	.	68.0	4.0	60.0	0.0	.	12	.	.	Atlas-SNP
SMS	6611	hgsc.bcm.edu	hg19	X	22010832	22010832	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMS	NM_004595	exon10	c.1061+2T>C	.	GAATTGTATCCTT	.	88.0	4.0	135.0	0.0	.	59	.	.	Atlas-SNP
PCYT1B	9468	hgsc.bcm.edu	hg19	X	24597452	24597452	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PCYT1B	NM_004845	exon6	c.T689C	p.L230P	ACATTCAGTTCCT	.	122.0	5.0	185.0	0.0	.	88	.	.	Atlas-SNP
MAGEB2	4113	hgsc.bcm.edu	hg19	X	30236769	30236769	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MAGEB2	NM_002364	exon2	c.T72C	p.G24G	CCGGGGTCTCAAT	.	96.0	4.0	125.0	0.0	.	133	.	.	Atlas-SNP
DMD	1756	hgsc.bcm.edu	hg19	X	32328324	32328324	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DMD	NM_004006	exon42	c.T5992C	p.S1998P	AAGTAGAAGGCAC	.	140.0	6.0	223.0	0.0	.	2127	.	.	Atlas-SNP
CHDC2	286464	hgsc.bcm.edu	hg19	X	36156116	36156116	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_173695	exon9	c.G1087C	p.D363H	GACAAAGACCTTT	.	176.0	10.0	244.0	0.0	.	.	.	.	Atlas-SNP
PRRG1	5638	hgsc.bcm.edu	hg19	X	37312753	37312753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PRRG1	NM_001173490	exon4	c.T536C	p.V179A	GCCAAGTGAACCT	.	55.0	4.0	66.0	0.0	.	42	.	.	Atlas-SNP
BCOR	54880	hgsc.bcm.edu	hg19	X	39913172	39913172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BCOR	NM_001123385	exon14	c.C4943A	p.P1648Q	TAACACGGTAAGA	.	86.0	4.0	135.0	0.0	.	351	.	.	Atlas-SNP
MED14	9282	hgsc.bcm.edu	hg19	X	40522223	40522223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MED14	NM_004229	exon26	c.C3638T	p.S1213L	ATGACTGATCCAA	.	95.0	5.0	115.0	0.0	.	108	.	.	Atlas-SNP
ZNF182	7569	hgsc.bcm.edu	hg19	X	47836310	47836310	+	Silent	SNP	G	G	A	rs376875839		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF182	NM_006962	exon7	c.C1176T	p.H392H	TCTCTGGTGTATA	.	96.0	5.0	148.0	0.0	.	117	.	.	Atlas-SNP
HDAC6	10013	hgsc.bcm.edu	hg19	X	48661183	48661183	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HDAC6	NM_006044	exon2	c.T84C	p.S28S	CTCCAGTGTCACT	.	110.0	5.0	168.0	0.0	.	111	.	.	Atlas-SNP
PPP1R3F	89801	hgsc.bcm.edu	hg19	X	49143280	49143280	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PPP1R3F	NM_033215	exon4	c.T2128C	p.L710L	AGTCCCTTGGGGG	.	81.0	4.0	140.0	0.0	.	56	.	.	Atlas-SNP
CLCN5	1184	hgsc.bcm.edu	hg19	X	49855056	49855056	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CLCN5	NM_001127898	exon13	c.A2028G	p.E676E	TGTGGAAGATGTA	.	96.0	4.0	115.0	0.0	.	137	.	.	Atlas-SNP
AKAP4	8852	hgsc.bcm.edu	hg19	X	49955744	49955744	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AKAP4	NM_003886	exon6	c.A2424G	p.S808S	TTTAGCTGAAACC	.	83.0	4.0	132.0	0.0	.	131	.	.	Atlas-SNP
SMC1A	8243	hgsc.bcm.edu	hg19	X	53432729	53432729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMC1A	NM_006306	exon10	c.A1705G	p.T569A	AGAAGGTCTCAGG	.	98.0	4.0	110.0	0.0	.	112	.	.	Atlas-SNP
HUWE1	10075	hgsc.bcm.edu	hg19	X	53579842	53579842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HUWE1	NM_031407	exon62	c.C8507A	p.P2836Q	CTCTCTGGGGAAA	.	83.0	4.0	115.0	0.0	.	724	.	.	Atlas-SNP
KLF8	11279	hgsc.bcm.edu	hg19	X	56291711	56291711	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KLF8	NM_001159296	exon4	c.A180G	p.P60P	GAACCCAGCACTG	.	96.0	4.0	138.0	0.0	.	38	.	.	Atlas-SNP
LAS1L	81887	hgsc.bcm.edu	hg19	X	64744928	64744928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LAS1L	NM_031206	exon8	c.A959G	p.E320G	ACAGCCTCCCTGG	.	65.0	4.0	54.0	0.0	.	72	.	.	Atlas-SNP
SLC7A3	84889	hgsc.bcm.edu	hg19	X	70149744	70149744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC7A3	NM_032803	exon2	c.T104C	p.L35P	AAATCCAGGGTGC	.	96.0	4.0	89.0	0.0	.	76	.	.	Atlas-SNP
MED12	9968	hgsc.bcm.edu	hg19	X	70352238	70352238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MED12	NM_005120	exon31	c.G4265T	p.R1422L	TAGAGCGCTCTGG	.	76.0	4.0	59.0	0.0	.	984	.	.	Atlas-SNP
TBX22	50945	hgsc.bcm.edu	hg19	X	79282236	79282236	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TBX22	NM_016954	exon5	c.C667A	p.R223R	AAACCCCGAGTGC	.	93.0	4.0	83.0	0.0	.	118	.	.	Atlas-SNP
IRS4	8471	hgsc.bcm.edu	hg19	X	107975816	107975816	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IRS4	NM_003604	exon1	c.C3759A	p.P1253P	TCTTTTGGGAGAG	.	89.0	4.0	77.0	0.0	.	253	.	.	Atlas-SNP
NKRF	55922	hgsc.bcm.edu	hg19	X	118725226	118725226	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NKRF	NM_001173487	exon4	c.A207G	p.R69R	ACGAGGTCTCGCA	.	85.0	4.0	60.0	0.0	.	121	.	.	Atlas-SNP
C1GALT1C1	29071	hgsc.bcm.edu	hg19	X	119760344	119760344	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C1GALT1C1	NM_152692	exon3	c.C678T	p.C226C	TTTCAGGCAAACT	.	107.0	6.0	93.0	0.0	.	22	.	.	Atlas-SNP
STAG2	10735	hgsc.bcm.edu	hg19	X	123190045	123190045	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STAG2	NM_001042749	exon14	c.C1264A	p.R422R	GCTCACCGGCCAG	.	88.0	4.0	79.0	0.0	.	309	.	.	Atlas-SNP
STAG2	10735	hgsc.bcm.edu	hg19	X	123190067	123190067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STAG2	NM_001042749	exon14	c.G1286T	p.G429V	CAGCTGGAGAATT	.	74.0	4.0	67.0	0.0	.	309	.	.	Atlas-SNP
GPR119	139760	hgsc.bcm.edu	hg19	X	129519158	129519158	+	Silent	SNP	G	G	T	rs200469524	bycluster;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GPR119	NM_178471	exon1	c.C264A	p.S88S	AGCTGCGGAGGAA	.	90.0	5.0	80.0	0.0	.	34	.	.	Atlas-SNP
SLC9A6	10479	hgsc.bcm.edu	hg19	X	135067790	135067790	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC9A6	NM_006359	exon1	c.G129A	p.S43S	GGCTTCGGACGGC	.	66.0	4.0	63.0	0.0	.	64	.	.	Atlas-SNP
AFF2	2334	hgsc.bcm.edu	hg19	X	148062276	148062276	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AFF2	NM_002025	exon19	c.T3579C	p.A1193A	AAATGCTTCAAAA	.	73.0	4.0	48.0	0.0	.	679	.	.	Atlas-SNP
FATE1	89885	hgsc.bcm.edu	hg19	X	150889973	150889973	+	Missense_Mutation	SNP	G	G	T	rs149441058	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FATE1	NM_033085	exon3	c.G341T	p.R114L	ATGATCGGTAAGA	.	90.0	4.0	66.0	0.0	.	30	.	G|1.000;A|0.000	Atlas-SNP
ATP2B3	492	hgsc.bcm.edu	hg19	X	152821529	152821529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ATP2B3	NM_001001344	exon12	c.G2081T	p.C694F	GAAAATGCCAGCG	.	95.0	4.0	72.0	0.0	.	552	.	.	Atlas-SNP
TKTL1	8277	hgsc.bcm.edu	hg19	X	153543546	153543546	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TKTL1	NM_012253	exon7	c.T888C	p.G296G	ATGCGGTCTGGCT	.	78.0	4.0	84.0	0.0	.	61	.	.	Atlas-SNP
DNASE1L1	1774	hgsc.bcm.edu	hg19	X	153631431	153631431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DNASE1L1	NM_006730	exon7	c.T626C	p.V209A	GCAATCACCCAGT	.	84.0	5.0	73.0	0.0	.	20	.	.	Atlas-SNP
GSDMB	55876	hgsc.bcm.edu	hg19	17	38068744	38068746	+	In_Frame_Del	DEL	TTT	TTT	-	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	TTT	TTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GSDMB	NM_001042471	exon3	c.241_243del	p.81_81del	.	.	213.0	104.0	216.0	0.0	.	87	.	.	Atlas-Indel,Pindel
AXIN1	8312	hgsc.bcm.edu	hg19	16	364562	364563	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AXIN1	NM_003502	exon3	c.1000_1001del	p.334_334del	.	.	52.0	23.0	135.0	0.0	.	290	.	.	Atlas-Indel,Pindel
RBM10	8241	hgsc.bcm.edu	hg19	X	47041174	47041185	+	In_Frame_Del	DEL	GCTCAAATCTGA	GCTCAAATCTGA	-	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	GCTCAAATCTGA	GCTCAAATCTGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RBM10	NM_001204468	exon15	c.1796_1807del	p.599_603del	.	.	31.0	18.0	109.0	0.0	.	117	.	.	Atlas-INDEL
ALB	213	hgsc.bcm.edu	hg19	4	74275125	74275126	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ALB	NM_000477	exon5	c.536_537insC	p.L179fs	.	.	297.0	154.0	388.0	0.0	.	132	.	.	Atlas-INDEL
VCX2	51480	hgsc.bcm.edu	hg19	X	8138170	8138171	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VCX2	NM_016378	exon3	c.323_324del	p.108_108del	.	.	110.0	12.0	186.0	0.0	.	16	.	.	Pindel
RBM10	8241	hgsc.bcm.edu	hg19	X	47041175	47041186	+	In_Frame_Del	DEL	CTCAAATCTGAG	CTCAAATCTGAG	-	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	CTCAAATCTGAG	CTCAAATCTGAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RBM10	NM_001204468	exon15	c.1797_1808del	p.599_603del	.	.	31.0	19.0	109.0	0.0	.	117	.	.	Pindel