Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
GPR157	80045	hgsc.bcm.edu	hg19	1	9188904	9188904	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	GPR157	NM_024980	exon1	c.C183T	p.A61A	GGAGGCGGCCGAG	.	43.0	17.0	28.0	0.0	.	14	.	.	Atlas-SNP
MRPS15	64960	hgsc.bcm.edu	hg19	1	36923570	36923570	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MRPS15	NM_031280	exon6	c.C398G	p.S133C	TTGACAGACAAGG	.	121.0	35.0	104.0	0.0	.	21	.	.	Atlas-SNP
ITGB3BP	23421	hgsc.bcm.edu	hg19	1	63974243	63974243	+	Splice_Site	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ITGB3BP	NM_014288	exon3	c.6-2A>G	.	TAACACTACAAAC	.	311.0	99.0	256.0	0.0	.	20	.	.	Atlas-SNP
DPYD	1806	hgsc.bcm.edu	hg19	1	98164998	98164998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	DPYD	NM_000110	exon6	c.C589T	p.P197S	TTGCAGGCCCAGC	.	162.0	51.0	145.0	0.0	.	219	.	.	Atlas-SNP
LPPR4	0	hgsc.bcm.edu	hg19	1	99771771	99771771	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	LPPR4	NM_014839	exon7	c.T1497C	p.N499N	TGGCAATCAGTAC	.	96.0	38.0	93.0	0.0	.	143	.	.	Atlas-SNP
KIAA0040	9674	hgsc.bcm.edu	hg19	1	175129924	175129924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	KIAA0040	NM_001162895	exon3	c.G226A	p.D76N	CTTCATCCTTCTT	.	120.0	6.0	117.0	0.0	.	2	.	.	Atlas-SNP
LAD1	3898	hgsc.bcm.edu	hg19	1	201351823	201351823	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	LAD1	NM_005558	exon8	c.G1431A	p.L477L	GATCCACAGGTTG	.	53.0	16.0	55.0	0.0	.	42	.	.	Atlas-SNP
ODC1	4953	hgsc.bcm.edu	hg19	2	10581663	10581663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ODC1	NM_002539	exon11	c.A1213G	p.I405V	AGTAGATCGTCGG	.	140.0	98.0	118.0	0.0	.	40	.	.	Atlas-SNP
SETD2	29072	hgsc.bcm.edu	hg19	3	47098921	47098921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	SETD2	NM_014159	exon15	c.C6353T	p.T2118I	TCCTCTGTAGAAA	.	96.0	24.0	98.0	0.0	.	721	.	.	Atlas-SNP
ROBO1	6091	hgsc.bcm.edu	hg19	3	78685014	78685014	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ROBO1	NM_002941	exon23	c.T3282C	p.S1094S	CTCGCCAGAGTCC	.	178.0	60.0	178.0	0.0	.	833	.	.	Atlas-SNP
OR5H14	403273	hgsc.bcm.edu	hg19	3	97868346	97868346	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	OR5H14	NM_001005514	exon1	c.C117A	p.I39I	CACCATCATGGGG	.	565.0	189.0	556.0	0.0	.	56	.	.	Atlas-SNP
BBX	56987	hgsc.bcm.edu	hg19	3	107510138	107510138	+	Missense_Mutation	SNP	C	C	T	rs138504832	alternate_allele	TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	BBX	NM_001142568	exon15	c.C2345T	p.P782L	TTCACCCTACAGA	.	230.0	53.0	215.0	0.0	.	156	.	C|1.000;A|0.000	Atlas-SNP
COPG1	22820	hgsc.bcm.edu	hg19	3	128973580	128973580	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	.	NM_016128	exon6	c.C393A	p.I131I	CCAGATCACTGAT	.	45.0	11.0	41.0	0.0	.	.	.	.	Atlas-SNP
GPR87	53836	hgsc.bcm.edu	hg19	3	151017871	151017871	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	GPR87	NM_023915	exon2	c.G18T	p.T6T	TGCAAGCGTCAAG	.	84.0	4.0	84.0	0.0	.	52	.	.	Atlas-SNP
NLGN1	22871	hgsc.bcm.edu	hg19	3	173998534	173998534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	NLGN1	NM_014932	exon7	c.C1913A	p.P638H	TCAGACCTACGAG	.	148.0	40.0	166.0	0.0	.	209	.	.	Atlas-SNP
PPEF2	5470	hgsc.bcm.edu	hg19	4	76794280	76794280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	PPEF2	NM_006239	exon12	c.G1506T	p.K502N	ACCCACCTTGCGG	.	92.0	21.0	76.0	0.0	.	108	.	.	Atlas-SNP
TENM3	55714	hgsc.bcm.edu	hg19	4	183659598	183659598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	.	NM_001080477	exon17	c.T3280C	p.W1094R	ACTCTGTGGGAAA	.	155.0	48.0	136.0	0.0	.	.	.	.	Atlas-SNP
OCLN	100506658	hgsc.bcm.edu	hg19	5	68805338	68805338	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	OCLN	NM_001205254	exon3	c.A421T	p.M141L	GGCTTCATGTTGG	.	318.0	111.0	289.0	0.0	.	22	.	.	Atlas-SNP
EDIL3	10085	hgsc.bcm.edu	hg19	5	83680126	83680126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	EDIL3	NM_005711	exon1	c.G67A	p.G23S	CCTTACCTTTGCC	.	46.0	15.0	36.0	0.0	.	94	.	.	Atlas-SNP
WDR36	134430	hgsc.bcm.edu	hg19	5	110456277	110456277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	WDR36	NM_139281	exon18	c.C2156A	p.T719N	CTGGTACTTGTCA	.	104.0	26.0	91.0	0.0	.	111	.	.	Atlas-SNP
MYOT	9499	hgsc.bcm.edu	hg19	5	137219116	137219116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	MYOT,colon,carcinoma,0,1	MYOT	NM_006790	exon7	c.G860T	p.G287V	TAAATGGAAGAAC	.	185.0	55.0	169.0	0.0	.	50	.	.	Atlas-SNP
ANKHD1	54882	hgsc.bcm.edu	hg19	5	139889380	139889380	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ANKHD1	NM_017747	exon21	c.T3924C	p.C1308C	ATTTTGTGAACTC	.	165.0	56.0	104.0	0.0	.	233	.	.	Atlas-SNP
PCDHA10	56139	hgsc.bcm.edu	hg19	5	140235699	140235699	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	PCDHA10	NM_031859	exon1	c.C66T	p.A22A	CGCAGCCTGGGAG	.	76.0	52.0	64.0	0.0	.	358	.	.	Atlas-SNP
ZNF354B	117608	hgsc.bcm.edu	hg19	5	178310382	178310382	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ZNF354B	NM_058230	exon5	c.G929C	p.R310T	GTCGAAGGTCTGG	.	203.0	63.0	201.0	0.0	.	67	.	.	Atlas-SNP
TFAP2A	7020	hgsc.bcm.edu	hg19	6	10398750	10398750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	TFAP2A	NM_003220	exon7	c.C1214A	p.A405D	TTGAGGGCCTCGG	.	151.0	60.0	150.0	0.0	.	129	.	.	Atlas-SNP
ZBTB9	221504	hgsc.bcm.edu	hg19	6	33424110	33424110	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ZBTB9	NM_152735	exon2	c.T1233A	p.F411L	GCCTTTTGGCTGT	.	44.0	8.0	44.0	0.0	.	23	.	.	Atlas-SNP
EYS	346007	hgsc.bcm.edu	hg19	6	66044982	66044982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	EYS	NM_001142801	exon11	c.C1657A	p.L553I	AACATAGATACCG	.	143.0	53.0	140.0	0.0	.	527	.	.	Atlas-SNP
FAM184A	79632	hgsc.bcm.edu	hg19	6	119345814	119345814	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	FAM184A	NM_024581	exon2	c.T324G	p.I108M	AACTTGAATCTTT	.	231.0	73.0	206.0	0.0	.	109	.	.	Atlas-SNP
SMPDL3A	10924	hgsc.bcm.edu	hg19	6	123110566	123110566	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	SMPDL3A	NM_006714	exon1	c.G75T	p.V25V	GCCCGTGGCGCCC	.	20.0	6.0	3.0	0.0	.	31	.	.	Atlas-SNP
ADGB	79747	hgsc.bcm.edu	hg19	6	147109747	147109747	+	Splice_Site	SNP	G	G	A	rs370591540		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ADGB	NM_024694	exon33	c.4537+1G>A	.	ACATTCGTAAGTA	.	53.0	22.0	51.0	0.0	.	93	.	.	Atlas-SNP
MAP3K4	4216	hgsc.bcm.edu	hg19	6	161470524	161470524	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MAP3K4	NM_006724	exon3	c.T1220G	p.L407X	AGAAATTAAGGAT	.	171.0	64.0	164.0	0.0	.	364	.	.	Atlas-SNP
DFNA5	1687	hgsc.bcm.edu	hg19	7	24758722	24758722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	DFNA5	NM_001127453	exon4	c.A520G	p.M174V	CCTGCATGTGCTC	.	27.0	15.0	51.0	0.0	.	51	.	.	Atlas-SNP
ZC3HAV1	56829	hgsc.bcm.edu	hg19	7	138764382	138764382	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ZC3HAV1	NM_024625	exon4	c.G1305T	p.V435V	TGTGGCCACTCCA	.	240.0	112.0	188.0	0.0	.	75	.	.	Atlas-SNP
EPHA1	2041	hgsc.bcm.edu	hg19	7	143095957	143095957	+	Missense_Mutation	SNP	G	G	T	rs370810516	alternate_allele	TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	EPHA1	NM_005232	exon6	c.C1073A	p.T358K	CCCCCCGTATCTG	.	47.0	23.0	32.0	0.0	.	193	.	.	Atlas-SNP
EPHA1	2041	hgsc.bcm.edu	hg19	7	143095959	143095959	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	EPHA1	NM_005232	exon6	c.T1071A	p.D357E	CCCCGTATCTGCT	.	46.0	22.0	32.0	0.0	.	193	.	.	Atlas-SNP
RP1	6101	hgsc.bcm.edu	hg19	8	55539906	55539906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	RP1	NM_006269	exon4	c.A3464G	p.N1155S	CTACCAACAAATC	.	244.0	58.0	196.0	0.0	.	429	.	.	Atlas-SNP
MATN2	4147	hgsc.bcm.edu	hg19	8	99045370	99045370	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MATN2	NM_002380	exon17	c.T2682C	p.S894S	ACGGTCTACACAA	.	190.0	52.0	141.0	0.0	.	165	.	.	Atlas-SNP
C9orf64	84267	hgsc.bcm.edu	hg19	9	86571114	86571114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	C9orf64	NM_032307	exon1	c.C302T	p.S101F	CACAGGGACCAGT	.	25.0	10.0	27.0	0.0	.	28	.	.	Atlas-SNP
MYO3A	53904	hgsc.bcm.edu	hg19	10	26414368	26414368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	MYO3A,NS,carcinoma,0,1	MYO3A	NM_017433	exon19	c.G1945T	p.A649S	CAAGAAGCTCTCA	.	127.0	34.0	165.0	0.0	.	371	.	.	Atlas-SNP
CDHR1	92211	hgsc.bcm.edu	hg19	10	85971460	85971460	+	Silent	SNP	T	T	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	CDHR1	NM_001171971	exon14	c.T1542A	p.T514T	TGGGACTGGGGCA	.	88.0	24.0	83.0	0.0	.	122	.	.	Atlas-SNP
KIF20B	9585	hgsc.bcm.edu	hg19	10	91522476	91522476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	KIF20B	NM_016195	exon29	c.A4753G	p.I1585V	TTAGAGATTCAAT	.	64.0	15.0	73.0	0.0	.	191	.	.	Atlas-SNP
LDB1	8861	hgsc.bcm.edu	hg19	10	103870721	103870721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	LDB1	NM_001113407	exon5	c.A257G	p.D86G	AGATTGTCACACT	.	91.0	39.0	95.0	0.0	.	61	.	.	Atlas-SNP
MRGPRE	116534	hgsc.bcm.edu	hg19	11	3249346	3249346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MRGPRE	NM_001039165	exon2	c.C684A	p.F228L	GCCGCAGAAGAGG	.	32.0	13.0	38.0	0.0	.	35	.	.	Atlas-SNP
CAPRIN1	4076	hgsc.bcm.edu	hg19	11	34112151	34112151	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	CAPRIN1	NM_203364	exon14	c.C1480T	p.Q494X	GTATTTCAGGCTG	.	134.0	6.0	136.0	0.0	.	110	.	.	Atlas-SNP
SLC22A10	387775	hgsc.bcm.edu	hg19	11	63059095	63059095	+	Silent	SNP	A	A	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	SLC22A10	NM_001039752	exon2	c.A486T	p.I162I	CATCATAGGTGGC	.	115.0	33.0	110.0	0.0	.	79	.	.	Atlas-SNP
KAT5	10524	hgsc.bcm.edu	hg19	11	65482196	65482196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	KAT5	NM_182710	exon7	c.G921T	p.K307N	TCTCAAGTGTCTT	.	162.0	53.0	162.0	0.0	.	36	.	.	Atlas-SNP
RAB6A	5870	hgsc.bcm.edu	hg19	11	73431941	73431941	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	RAB6A	NM_002869	exon3	c.A133G	p.T45A	CAATTGTTGCCTG	.	118.0	31.0	113.0	0.0	.	17	.	.	Atlas-SNP
TNFRSF1A	7132	hgsc.bcm.edu	hg19	12	6443355	6443355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	TNFRSF1A	NM_001065	exon2	c.C95A	p.P32H	AGGTGAGGGACCA	.	116.0	43.0	117.0	0.0	.	39	.	.	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49427419	49427419	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MLL2	NM_003482	exon39	c.G11069T	p.G3690V	AGGGATCCAGCCC	.	52.0	14.0	58.0	0.0	.	1173	.	.	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49427420	49427420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MLL2	NM_003482	exon39	c.G11068A	p.G3690R	GGGATCCAGCCCC	.	52.0	14.0	59.0	0.0	.	1173	.	.	Atlas-SNP
NOS1	4842	hgsc.bcm.edu	hg19	12	117723945	117723945	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	NOS1,caecum,carcinoma,0,1	NOS1	NM_000620	exon6	c.G1254A	p.S418S	ACAGCGCGAGGCA	.	122.0	32.0	157.0	0.0	.	240	.	.	Atlas-SNP
HS6ST3	266722	hgsc.bcm.edu	hg19	13	97484795	97484795	+	Silent	SNP	C	C	T	rs368146960		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	HS6ST3	NM_153456	exon2	c.C759T	p.S253S	CCTGAGCGAGTGG	.	89.0	27.0	87.0	0.0	.	54	.	.	Atlas-SNP
APBA2	321	hgsc.bcm.edu	hg19	15	29398965	29398965	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	APBA2	NM_005503	exon11	c.C1860T	p.S620S	CATGTCCATCAAT	.	121.0	40.0	101.0	0.0	.	132	.	.	Atlas-SNP
SPTBN5	51332	hgsc.bcm.edu	hg19	15	42158099	42158099	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	SPTBN5	NM_016642	exon39	c.G6720A	p.E2240E	CTTCACCTCCTGT	.	70.0	20.0	61.0	0.0	.	171	.	.	Atlas-SNP
HDC	3067	hgsc.bcm.edu	hg19	15	50534990	50534990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	HDC	NM_002112	exon12	c.C1456T	p.R486W	CAACCCGAGGGCT	.	60.0	17.0	69.0	0.0	.	86	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7578271	7578271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	TP53_ENST00000545858,NS,carcinoma,0,1	TP53	NM_000546	exon6	c.A578G	p.H193R	ATAAGATGCTGAG	.	66.0	32.0	121.0	1.0	.	33396	.	.	Atlas-SNP
ZNF559	84527	hgsc.bcm.edu	hg19	19	9453375	9453375	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ZNF559	NM_001202406	exon6	c.A1440C	p.K480N	TGGGAAAGCCTTC	.	87.0	47.0	144.0	0.0	.	77	.	.	Atlas-SNP
PALM3	342979	hgsc.bcm.edu	hg19	19	14167259	14167259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	PALM3	NM_001145028	exon4	c.G336T	p.R112S	GCTGGGCCTGCCT	.	56.0	30.0	79.0	0.0	.	26	.	.	Atlas-SNP
LHB	3972	hgsc.bcm.edu	hg19	19	49519808	49519808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	LHB	NM_000894	exon2	c.C179A	p.T60N	ACCATGGTGGGGC	.	86.0	43.0	83.0	0.0	.	20	.	.	Atlas-SNP
CACNG7	59284	hgsc.bcm.edu	hg19	19	54417766	54417766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	CACNG7,caecum,carcinoma,0,2	CACNG7	NM_031896	exon2	c.G209T	p.G70V	AGAAAGGTCGCTG	.	127.0	31.0	140.0	0.0	.	58	.	.	Atlas-SNP
NOP56	10528	hgsc.bcm.edu	hg19	20	2635458	2635458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	NOP56	NM_006392	exon5	c.A434G	p.Q145R	AAGCACAGCTGGG	.	50.0	19.0	60.0	0.0	.	73	.	.	Atlas-SNP
ZFX	7543	hgsc.bcm.edu	hg19	X	24229378	24229378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ZFX	NM_003410	exon10	c.C2303A	p.S768Y	TTATTTCCATTCA	.	310.0	111.0	352.0	0.0	.	61	.	.	Atlas-SNP
FAM47A	158724	hgsc.bcm.edu	hg19	X	34149524	34149524	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	FAM47A	NM_203408	exon1	c.C872G	p.T291R	GGCTCTGTGGGTT	.	136.0	43.0	156.0	0.0	.	249	.	.	Atlas-SNP
MAOB	4129	hgsc.bcm.edu	hg19	X	43655030	43655030	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MAOB	NM_000898	exon7	c.A724T	p.R242X	TTTCTCTTGTCTG	.	116.0	44.0	121.0	0.0	.	52	.	.	Atlas-SNP
MTMR8	55613	hgsc.bcm.edu	hg19	X	63548663	63548663	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MTMR8	NM_017677	exon12	c.C1470A	p.P490P	GTTGTAGGGCACA	.	35.0	12.0	26.0	0.0	.	178	.	.	Atlas-SNP
FAM127C	441518	hgsc.bcm.edu	hg19	X	134156305	134156305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	FAM127C	NM_001078173	exon1	c.C185T	p.A62V	TTCAGGGCGTCGT	.	160.0	54.0	137.0	0.0	.	27	.	.	Atlas-SNP
CYP4A22	284541	hgsc.bcm.edu	hg19	1	47609480	47609481	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	CYP4A22,NS,malignant_melanoma,0,1	CYP4A22	NM_001010969	exon6	c.682_683insT	p.V228fs	.	.	157.0	48.0	189.0	0.0	.	60	.	.	Atlas-INDEL
CEP350	9857	hgsc.bcm.edu	hg19	1	180062616	180062617	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	CEP350	NM_014810	exon34	c.7376_7377insT	p.K2459fs	.	.	325.0	156.0	252.0	0.0	.	418	.	.	Atlas-INDEL
NFE2L2	4780	hgsc.bcm.edu	hg19	2	178098960	178098974	+	In_Frame_Del	DEL	CTATATCTTGCCTCC	CTATATCTTGCCTCC	-	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	CTATATCTTGCCTCC	CTATATCTTGCCTCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	NFE2L2,bladder,carcinoma,-1,8	NFE2L2	NM_006164	exon2	c.72_86del	p.24_29del	.	.	159.0	125.0	127.0	0.0	.	225	.	.	Atlas-Indel,Pindel
DEPDC1	55635	hgsc.bcm.edu	hg19	1	68944871	68944874	+	Frame_Shift_Del	DEL	GTAA	GTAA	-	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	GTAA	GTAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	DEPDC1	NM_001114120	exon10	c.2066_2069del	p.689_690del	.	.	172.0	51.0	208.0	0.0	.	102	.	.	Atlas-Indel,Pindel
NCAM1	4684	hgsc.bcm.edu	hg19	11	112832332	112832363	+	Frame_Shift_Del	DEL	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	-	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	CATCCCTCCCAGCCAGCAGATTACAATGCTGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	NCAM1	NM_001242608	wholegene	.	.	.	.	160.0	26.0	167.0	0.0	.	372	.	.	Pindel