Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
AJAP1	55966	hgsc.bcm.edu	hg19	1	4772487	4772487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	AJAP1	NM_018836	exon2	c.C557T	p.T186M	GGCCCACGGGGGA	.	40.0	13.0	52.0	0.0	.	68	.	.	Atlas-SNP
CAMTA1	23261	hgsc.bcm.edu	hg19	1	7724692	7724692	+	Silent	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CAMTA1	NM_015215	exon9	c.G2085T	p.S695S	GACCTCGCAGGCG	.	113.0	79.0	114.0	0.0	.	226	.	.	Atlas-SNP
PPCS	79717	hgsc.bcm.edu	hg19	1	42922564	42922564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PPCS	NM_024664	exon1	c.C328T	p.P110S	TCGGGCCCAGCCC	.	46.0	4.0	72.0	0.0	.	30	.	.	Atlas-SNP
SLC6A9	6536	hgsc.bcm.edu	hg19	1	44468280	44468280	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SLC6A9	NM_201649	exon7	c.G981A	p.L327L	AATGGTCAGCACC	.	113.0	5.0	143.0	0.0	.	109	.	.	Atlas-SNP
ZFYVE9	9372	hgsc.bcm.edu	hg19	1	52761566	52761566	+	Splice_Site	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZFYVE9	NM_007324	exon11	c.3074-1G>T	.	TCCATAGTTTATC	.	94.0	5.0	131.0	0.0	.	131	.	.	Atlas-SNP
PIAS3	10401	hgsc.bcm.edu	hg19	1	145585532	145585532	+	Silent	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PIAS3	NM_006099	exon14	c.T1797G	p.P599P	GGCCCCTGGGGGG	.	10.0	7.0	15.0	0.0	.	96	.	.	Atlas-SNP
HORMAD1	84072	hgsc.bcm.edu	hg19	1	150680868	150680868	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	HORMAD1	NM_032132	exon9	c.C411T	p.N137N	AGATTCGTTGCTT	.	170.0	21.0	147.0	0.0	.	59	.	.	Atlas-SNP
NUP210L	91181	hgsc.bcm.edu	hg19	1	154018769	154018769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NUP210L	NM_001159484	exon26	c.C3560T	p.T1187I	ACCTTGGTAGCTG	.	209.0	9.0	146.0	0.0	.	181	.	.	Atlas-SNP
ATP1A4	480	hgsc.bcm.edu	hg19	1	160121863	160121863	+	Silent	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ATP1A4	NM_144699	exon1	c.T33G	p.A11A	AGTGGCTCCCCAT	.	31.0	14.0	38.0	0.0	.	167	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181700351	181700351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CACNA1E	NM_001205293	exon19	c.C2281A	p.P761T	TGGGAGCCACGCA	.	404.0	75.0	282.0	0.0	.	778	.	.	Atlas-SNP
TARBP1	6894	hgsc.bcm.edu	hg19	1	234536930	234536930	+	Silent	SNP	T	T	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TARBP1	NM_005646	exon25	c.A4068T	p.L1356L	CACCTCTAGACAA	.	78.0	46.0	64.0	0.0	.	111	.	.	Atlas-SNP
USP34	9736	hgsc.bcm.edu	hg19	2	61505325	61505325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	USP34	NM_014709	exon41	c.C5408A	p.P1803H	TTAAAGGGTGGTT	.	85.0	4.0	55.0	0.0	.	334	.	.	Atlas-SNP
XPO1	7514	hgsc.bcm.edu	hg19	2	61726908	61726908	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	XPO1	NM_003400	exon7	c.A530T	p.E177V	AATACTTCTTCAC	.	127.0	7.0	113.0	0.0	.	108	.	.	Atlas-SNP
XPO1	7514	hgsc.bcm.edu	hg19	2	61726909	61726909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	XPO1	NM_003400	exon7	c.G529A	p.E177K	ATACTTCTTCACT	.	126.0	6.0	115.0	0.0	.	108	.	.	Atlas-SNP
RGPD4	285190	hgsc.bcm.edu	hg19	2	108499260	108499260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	RGPD4,NS,carcinoma,0,1	RGPD4	NM_182588	exon22	c.C5197A	p.L1733I	AGACTTCTTCCTG	.	1025.0	200.0	937.0	0.0	.	112	.	.	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	hg19	2	141128766	141128766	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	LRP1B	NM_018557	exon70	c.T10857G	p.C3619W	ATCAGCACAATCA	.	271.0	36.0	211.0	0.0	.	1315	.	.	Atlas-SNP
NEB	4703	hgsc.bcm.edu	hg19	2	152466364	152466364	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	NEB_ENST00000427231,NS,carcinoma,0,3	NEB	NM_001271208	exon81	c.G12289C	p.D4097H	TAATGTCGTTTTG	.	210.0	48.0	170.0	1.0	.	1697	.	.	Atlas-SNP
NBEAL1	65065	hgsc.bcm.edu	hg19	2	204067444	204067444	+	Silent	SNP	A	A	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NBEAL1	NM_001114132	exon50	c.A7359T	p.G2453G	CTGTGGAATACAT	.	130.0	7.0	121.0	0.0	.	266	.	.	Atlas-SNP
CCDC108	255101	hgsc.bcm.edu	hg19	2	219874178	219874178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CCDC108	NM_194302	exon28	c.C4457T	p.S1486F	CTCACAGACACCT	.	91.0	36.0	120.0	0.0	.	208	.	.	Atlas-SNP
UGT1A4	54657	hgsc.bcm.edu	hg19	2	234628158	234628158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	UGT1A4	NM_007120	exon1	c.A692G	p.Y231C	CCCCTTATGCAAG	.	299.0	85.0	289.0	0.0	.	63	.	.	Atlas-SNP
CACNA1D	776	hgsc.bcm.edu	hg19	3	53845180	53845180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CACNA1D	NM_000720	exon49	c.C6293T	p.P2098L	GGGACCCAAAATT	.	203.0	13.0	196.0	0.0	.	324	.	.	Atlas-SNP
ROBO2	6092	hgsc.bcm.edu	hg19	3	77656991	77656991	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ROBO2	NM_002942	exon21	c.A3179C	p.K1060T	CTTCTAAACCACA	.	79.0	15.0	76.0	0.0	.	527	.	.	Atlas-SNP
NFKBIZ	64332	hgsc.bcm.edu	hg19	3	101571988	101571988	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NFKBIZ	NM_031419	exon5	c.T618G	p.N206K	TCTCAATGAACCC	.	88.0	36.0	88.0	0.0	.	55	.	.	Atlas-SNP
ECE2	9718	hgsc.bcm.edu	hg19	3	184008634	184008634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ECE2	NM_014693	exon16	c.C2174A	p.A725D	CGCATGCCTTTGA	.	146.0	7.0	180.0	0.0	.	303	.	.	Atlas-SNP
VPS8	23355	hgsc.bcm.edu	hg19	3	184711798	184711798	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	VPS8	NM_001009921	exon42	c.G3613C	p.G1205R	AAACTTGGAGAAA	.	113.0	5.0	160.0	0.0	.	109	.	.	Atlas-SNP
ZNF721	170960	hgsc.bcm.edu	hg19	4	438107	438107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF721	NM_133474	exon3	c.G149T	p.W50L	CCTTTCCTTAATT	.	135.0	23.0	127.0	0.0	.	205	.	.	Atlas-SNP
BEND4	389206	hgsc.bcm.edu	hg19	4	42145862	42145862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	BEND4	NM_001159547	exon3	c.G637A	p.E213K	AGTGCTCCTGTCT	.	284.0	77.0	266.0	0.0	.	67	.	.	Atlas-SNP
FRAS1	80144	hgsc.bcm.edu	hg19	4	79398969	79398969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	FRAS1	NM_025074	exon55	c.G7852A	p.V2618I	TGACAGGTCCAGT	.	207.0	110.0	199.0	0.0	.	779	.	.	Atlas-SNP
GPRIN3	285513	hgsc.bcm.edu	hg19	4	90170573	90170573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	GPRIN3	NM_198281	exon2	c.C689A	p.S230Y	ATTTCAGAGTCAC	.	62.0	20.0	60.0	0.0	.	90	.	.	Atlas-SNP
ANK2	287	hgsc.bcm.edu	hg19	4	114274746	114274746	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ANK2	NM_001148	exon38	c.G4972C	p.V1658L	CAGACAGTTCAAG	.	52.0	25.0	76.0	0.0	.	576	.	.	Atlas-SNP
SDHA	6389	hgsc.bcm.edu	hg19	5	223682	223682	+	Missense_Mutation	SNP	C	C	T	rs369321221	alternate_allele	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SDHA	NM_004168	exon2	c.C149T	p.S50F	CAGATTCCGTAAG	.	331.0	75.0	355.0	0.0	.	80	.	.	Atlas-SNP
FBN2	2201	hgsc.bcm.edu	hg19	5	127705012	127705012	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	FBN2	NM_001999	exon16	c.G2111T	p.S704I	CAGGTACTGCGCA	.	48.0	17.0	66.0	0.0	.	858	.	.	Atlas-SNP
EBF1	1879	hgsc.bcm.edu	hg19	5	158139190	158139190	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	EBF1	NM_024007	exon14	c.C1521T	p.N507N	TGAGCCGTTGAGG	.	84.0	25.0	117.0	0.0	.	110	.	.	Atlas-SNP
ADAMTS2	9509	hgsc.bcm.edu	hg19	5	178552067	178552067	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	ADAMTS2,caecum,carcinoma,0,1	ADAMTS2	NM_014244	exon19	c.C2865T	p.H955H	CTTGGCGTGCACG	.	27.0	4.0	60.0	0.0	.	190	.	.	Atlas-SNP
VWA7	80737	hgsc.bcm.edu	hg19	6	31742377	31742377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	NM_025258	exon5	c.G637A	p.E213K	ACTCCTCGCAATC	.	56.0	18.0	42.0	0.0	.	.	.	.	Atlas-SNP
PEX6	5190	hgsc.bcm.edu	hg19	6	42932089	42932089	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PEX6	NM_000287	exon17	c.A2927C	p.K976T	GCAAACTTGCGCT	.	104.0	42.0	122.0	0.0	.	44	.	.	Atlas-SNP
KLHDC3	116138	hgsc.bcm.edu	hg19	6	42986679	42986679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	KLHDC3	NM_057161	exon8	c.G899T	p.G300V	TTGTTGGTGACAA	.	73.0	13.0	91.0	0.0	.	23	.	.	Atlas-SNP
DEFB110	245913	hgsc.bcm.edu	hg19	6	49989618	49989618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	DEFB110	NM_001037728	exon1	c.C31A	p.H11N	AAAAGTGCAGAAT	.	51.0	11.0	45.0	0.0	.	5	.	.	Atlas-SNP
DST	667	hgsc.bcm.edu	hg19	6	56489962	56489962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	DST	NM_001723	exon21	c.T3212C	p.I1071T	TCTTGAATAATGA	.	87.0	4.0	68.0	0.0	.	1427	.	.	Atlas-SNP
C6orf165	154313	hgsc.bcm.edu	hg19	6	88128105	88128105	+	Missense_Mutation	SNP	C	C	A	rs140570931	alternate_allele	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	C6orf165	NM_001031743	exon7	c.C811A	p.Q271K	ATACGACAATATG	.	101.0	23.0	88.0	0.0	.	116	.	C|1.000;T|0.000	Atlas-SNP
UFL1	23376	hgsc.bcm.edu	hg19	6	96997391	96997391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	NM_015323	exon14	c.G1624A	p.E542K	TTGCAAGAAGAAG	.	120.0	6.0	115.0	0.0	.	.	.	.	Atlas-SNP
TIAM2	26230	hgsc.bcm.edu	hg19	6	155504406	155504406	+	Missense_Mutation	SNP	G	G	T	rs76467763	bycluster;alternate_allele	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TIAM2	NM_012454	exon13	c.G2836T	p.G946W	TTAAATGGGGAAG	.	113.0	28.0	106.0	0.0	.	161	.	.	Atlas-SNP
TMEM181	57583	hgsc.bcm.edu	hg19	6	159029441	159029441	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TMEM181	NM_020823	exon9	c.C1161T	p.F387F	CATGTTCCTGTGC	.	315.0	141.0	366.0	0.0	.	47	.	.	Atlas-SNP
SDK1	221935	hgsc.bcm.edu	hg19	7	4008918	4008918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	SDK1,colon,carcinoma,-1,1	SDK1	NM_152744	exon11	c.C1576T	p.R526W	TCTGTCCGGATTC	.	185.0	68.0	145.0	1.0	.	361	.	.	Atlas-SNP
PAPOLB	56903	hgsc.bcm.edu	hg19	7	4900131	4900131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PAPOLB	NM_020144	exon1	c.G1311A	p.M437I	CACCCACATTGTA	.	273.0	55.0	184.0	0.0	.	93	.	.	Atlas-SNP
HDAC9	9734	hgsc.bcm.edu	hg19	7	18767353	18767353	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	HDAC9_ENST00000262069,left_lower_lobe,carcinoma,0,4	HDAC9	NM_178425	exon12	c.C1882A	p.R628S	ATGGACCGCCCCC	.	284.0	18.0	205.0	0.0	.	560	.	.	Atlas-SNP
TNS3	64759	hgsc.bcm.edu	hg19	7	47384383	47384383	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TNS3	NM_022748	exon20	c.A2620T	p.S874C	CTGGGCTGCTCAG	.	68.0	32.0	49.0	0.0	.	140	.	.	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48559880	48559880	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ABCA13	NM_152701	exon53	c.C14041T	p.R4681X	CTTCTGCGATGGC	.	191.0	8.0	165.0	0.0	.	1192	.	.	Atlas-SNP
SEMA3C	10512	hgsc.bcm.edu	hg19	7	80435065	80435065	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SEMA3C	NM_006379	exon7	c.T548A	p.L183H	GAGAAAAGCTCCT	.	51.0	8.0	31.0	0.0	.	106	.	.	Atlas-SNP
TRPV5	56302	hgsc.bcm.edu	hg19	7	142625797	142625797	+	Missense_Mutation	SNP	C	C	T	rs377425606		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TRPV5	NM_019841	exon6	c.G751A	p.G251S	TGTTACCCTCCAC	.	95.0	12.0	153.0	0.0	.	164	.	.	Atlas-SNP
PIWIL2	55124	hgsc.bcm.edu	hg19	8	22136992	22136992	+	Silent	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PIWIL2	NM_001135721	exon2	c.T93G	p.A31A	ACAAGCTTCTAAA	.	117.0	52.0	113.0	0.0	.	100	.	.	Atlas-SNP
TRPA1	8989	hgsc.bcm.edu	hg19	8	72967815	72967815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TRPA1	NM_007332	exon12	c.G1385T	p.C462F	CTCTGACAGGTAT	.	345.0	74.0	320.0	0.0	.	256	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113519031	113519031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CSMD3	NM_198123	exon29	c.C4784A	p.S1595Y	CCTGAAGATCCTG	.	85.0	31.0	80.0	0.0	.	2325	.	.	Atlas-SNP
ASAP1	50807	hgsc.bcm.edu	hg19	8	131104271	131104271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ASAP1	NM_018482	exon25	c.C2520A	p.D840E	GGGAGGGTCGGAT	.	86.0	40.0	77.0	0.0	.	133	.	.	Atlas-SNP
RPP25L	138716	hgsc.bcm.edu	hg19	9	34610870	34610870	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	NM_148179	exon2	c.C424G	p.L142V	AACCCAGGCCAGG	.	30.0	12.0	49.0	0.0	.	.	.	.	Atlas-SNP
ASPN	54829	hgsc.bcm.edu	hg19	9	95228783	95228783	+	Missense_Mutation	SNP	C	C	T	rs371768627		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ASPN	NM_001193335	exon4	c.G458A	p.R153Q	AGCCTTCGCAACT	.	210.0	17.0	202.0	0.0	.	52	.	.	Atlas-SNP
LRRTM3	347731	hgsc.bcm.edu	hg19	10	68687250	68687250	+	Silent	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	LRRTM3	NM_178011	exon2	c.G576T	p.R192R	TAACCGGATCCGA	.	54.0	4.0	78.0	0.0	.	241	.	.	Atlas-SNP
LRRTM3	347731	hgsc.bcm.edu	hg19	10	68687251	68687251	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	LRRTM3	NM_178011	exon2	c.A577T	p.I193F	AACCGGATCCGAA	.	53.0	5.0	81.0	0.0	.	241	.	.	Atlas-SNP
NUP160	23279	hgsc.bcm.edu	hg19	11	47801951	47801951	+	Missense_Mutation	SNP	T	T	C	rs62000434		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NUP160	NM_015231	exon35	c.A4165G	p.I1389V	GATCAATAGAGGA	.	114.0	30.0	97.0	0.0	.	116	.	T|0.987;C|0.013	Atlas-SNP
PTPRJ	5795	hgsc.bcm.edu	hg19	11	48185171	48185171	+	Splice_Site	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PTPRJ	NM_002843	exon23	c.3719+1G>T	.	TTGCAGGTACGCA	.	106.0	57.0	102.0	0.0	.	225	.	.	Atlas-SNP
CTNND1	1500	hgsc.bcm.edu	hg19	11	57577636	57577636	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	CTNND1_ENST00000399050,NS,carcinoma,0,2	CTNND1	NM_001085458	exon16	c.G2491T	p.G831X	ATCTGGGGATATA	.	48.0	12.0	37.0	0.0	.	203	.	.	Atlas-SNP
CTNND1	1500	hgsc.bcm.edu	hg19	11	57577637	57577637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CTNND1	NM_001085458	exon16	c.G2492T	p.G831V	TCTGGGGATATAA	.	48.0	12.0	37.0	0.0	.	203	.	.	Atlas-SNP
INCENP	3619	hgsc.bcm.edu	hg19	11	61912532	61912532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	INCENP	NM_001040694	exon12	c.G1684A	p.D562N	GAGGAGGACAAGC	.	91.0	49.0	102.0	0.0	.	122	.	.	Atlas-SNP
LGALS12	85329	hgsc.bcm.edu	hg19	11	63277947	63277947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	LGALS12	NM_001142535	exon5	c.G574A	p.G192S	GTGGAGGGCAGCA	.	237.0	46.0	164.0	0.0	.	35	.	.	Atlas-SNP
SF1	7536	hgsc.bcm.edu	hg19	11	64537468	64537468	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SF1	NM_001178030	exon5	c.A822C	p.E274D	GTTGATTTCTGGG	.	109.0	50.0	84.0	0.0	.	124	.	.	Atlas-SNP
TENM4	26011	hgsc.bcm.edu	hg19	11	78380618	78380618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	NM_001098816	exon32	c.G6772A	p.D2258N	AGCCATCCTCATC	.	244.0	15.0	177.0	0.0	.	.	.	.	Atlas-SNP
JAM3	83700	hgsc.bcm.edu	hg19	11	134014143	134014143	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	JAM3	NM_032801	exon4	c.G264C	p.L88F	AGACTTGGCGGGT	.	94.0	21.0	64.0	0.0	.	41	.	.	Atlas-SNP
INHBE	83729	hgsc.bcm.edu	hg19	12	57849890	57849890	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	INHBE	NM_031479	exon2	c.C312T	p.A104A	TTCAGCCTACAGC	.	98.0	6.0	69.0	0.0	.	38	.	.	Atlas-SNP
PIP4K2C	79837	hgsc.bcm.edu	hg19	12	57985226	57985226	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PIP4K2C	NM_001146258	exon1	c.C154T	p.L52L	GTGTTCCTGTGGG	.	201.0	90.0	222.0	0.0	.	50	.	.	Atlas-SNP
GCN1L1	10985	hgsc.bcm.edu	hg19	12	120602471	120602471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	GCN1L1	NM_006836	exon17	c.G1667T	p.R556I	GTGAGTCTATGCG	.	175.0	13.0	193.0	0.0	.	207	.	.	Atlas-SNP
TMEM132D	121256	hgsc.bcm.edu	hg19	12	129559354	129559354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TMEM132D	NM_133448	exon9	c.G2366A	p.G789E	GCCGTTCCAACAG	.	323.0	25.0	371.0	0.0	.	299	.	.	Atlas-SNP
NUDT15	55270	hgsc.bcm.edu	hg19	13	48611931	48611931	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NUDT15	NM_018283	exon1	c.G49T	p.G17X	GGAGTCGGAGTCG	.	46.0	5.0	47.0	0.0	.	12	.	.	Atlas-SNP
SLITRK1	114798	hgsc.bcm.edu	hg19	13	84454076	84454076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SLITRK1	NM_052910	exon1	c.C1567A	p.Q523K	CTATCTGGATGAT	.	142.0	29.0	96.0	0.0	.	196	.	.	Atlas-SNP
TFDP1	7027	hgsc.bcm.edu	hg19	13	114277525	114277525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TFDP1	NM_007111	exon4	c.C110T	p.S37F	ACCCCTCCACCGT	.	196.0	53.0	119.0	0.0	.	70	.	.	Atlas-SNP
KLHL33	123103	hgsc.bcm.edu	hg19	14	20898551	20898551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	KLHL33	NM_001109997	exon2	c.G284A	p.R95H	TAGTGACGGGCTT	.	117.0	22.0	86.0	0.0	.	37	.	.	Atlas-SNP
CFL2	1073	hgsc.bcm.edu	hg19	14	35182517	35182517	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CFL2	NM_021914	exon2	c.A254G	p.Y85C	GCATCGTACAAAG	.	118.0	62.0	94.0	0.0	.	22	.	.	Atlas-SNP
FSCB	84075	hgsc.bcm.edu	hg19	14	44975318	44975318	+	Silent	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	FSCB	NM_032135	exon1	c.C873A	p.V291V	TACTTGGACATGG	.	41.0	5.0	45.0	0.0	.	173	.	.	Atlas-SNP
SIX4	51804	hgsc.bcm.edu	hg19	14	61186834	61186834	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SIX4	NM_017420	exon2	c.C1193G	p.S398X	ATGTTTGATGACA	.	160.0	31.0	143.0	0.0	.	69	.	.	Atlas-SNP
EIF2B2	8892	hgsc.bcm.edu	hg19	14	75471535	75471535	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	EIF2B2	NM_014239	exon4	c.T529G	p.F177V	GAGGCCTTCCTCA	.	89.0	21.0	48.0	0.0	.	22	.	.	Atlas-SNP
RTL1	388015	hgsc.bcm.edu	hg19	14	101349498	101349498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RTL1	NM_001134888	exon1	c.C1628T	p.A543V	TCTAGGGCAATGC	.	189.0	36.0	161.0	0.0	.	120	.	.	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	hg19	14	105414938	105414938	+	Missense_Mutation	SNP	C	C	T	rs112406618	bycluster	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	AHNAK2_ENST00000333244,NS,carcinoma,0,2	AHNAK2	NM_138420	exon7	c.G6850A	p.V2284M	CCTCCACGCTGGG	.	446.0	57.0	227.0	0.0	.	719	.	C|0.500;T|0.500	Atlas-SNP
ADAL	161823	hgsc.bcm.edu	hg19	15	43643144	43643144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ADAL	NM_001159280	exon11	c.T697C	p.C233R	GAACTCTGTTTGA	.	116.0	38.0	212.0	0.0	.	48	.	.	Atlas-SNP
MSLN	10232	hgsc.bcm.edu	hg19	16	815541	815541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MSLN	NM_005823	exon10	c.G719T	p.W240L	CGACATGGTCTGT	.	40.0	4.0	78.0	0.0	.	109	.	.	Atlas-SNP
USP7	7874	hgsc.bcm.edu	hg19	16	9000399	9000399	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	USP7	NM_003470	exon13	c.C1312T	p.Q438X	TTTTTTGCAAAAA	.	40.0	22.0	39.0	0.0	.	116	.	.	Atlas-SNP
ITGAD	3681	hgsc.bcm.edu	hg19	16	31419146	31419146	+	Silent	SNP	G	G	A	rs141660381		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ITGAD	NM_005353	exon9	c.G918A	p.A306A	CTCAGCGCCTCCG	.	167.0	33.0	124.0	0.0	.	154	.	G|1.000;A|0.000	Atlas-SNP
CDH8	1006	hgsc.bcm.edu	hg19	16	61687728	61687728	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CDH8	NM_001796	exon12	c.G2184C	p.R728S	ATGCAGCCTTACA	.	58.0	8.0	63.0	0.0	.	273	.	.	Atlas-SNP
OSGIN1	29948	hgsc.bcm.edu	hg19	16	83999421	83999421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	OSGIN1	NM_182981	exon6	c.G1243A	p.D415N	GCAGTGGATCCTG	.	223.0	49.0	252.0	0.0	.	33	.	.	Atlas-SNP
ZNF469	84627	hgsc.bcm.edu	hg19	16	88498400	88498400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF469	NM_001127464	exon2	c.T4438C	p.S1480P	GAAGTATCCCCGA	.	61.0	7.0	54.0	0.0	.	121	.	.	Atlas-SNP
NXN	64359	hgsc.bcm.edu	hg19	17	704279	704279	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NXN	NM_022463	exon8	c.C1218A	p.Y406X	CATCACGTACTTG	.	57.0	4.0	84.0	0.0	.	32	.	.	Atlas-SNP
MYOCD	93649	hgsc.bcm.edu	hg19	17	12655884	12655884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MYOCD	NM_001146312	exon10	c.C1279A	p.P427T	GTCACACCCAACA	.	125.0	32.0	108.0	0.0	.	291	.	.	Atlas-SNP
FLII	2314	hgsc.bcm.edu	hg19	17	18154288	18154288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	FLII	NM_002018	exon14	c.A1640G	p.Y547C	ATCCAGTAGTAGA	.	211.0	26.0	223.0	0.0	.	79	.	.	Atlas-SNP
IKZF3	22806	hgsc.bcm.edu	hg19	17	37922298	37922298	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	IKZF3,colon,carcinoma,0,2	IKZF3	NM_012481	exon8	c.C1275T	p.Y425Y	GAGTTCGTAAGAG	.	132.0	27.0	130.0	0.0	.	79	.	.	Atlas-SNP
ACLY	47	hgsc.bcm.edu	hg19	17	40028400	40028400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ACLY	NM_001096	exon24	c.G2678A	p.C893Y	ATCAGACACATCT	.	112.0	21.0	113.0	0.0	.	85	.	.	Atlas-SNP
MYCBPAP	84073	hgsc.bcm.edu	hg19	17	48601116	48601116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MYCBPAP	NM_032133	exon12	c.G1735A	p.V579I	CAGGACGTTTTTG	.	99.0	54.0	111.0	0.0	.	135	.	.	Atlas-SNP
LUC7L3	51747	hgsc.bcm.edu	hg19	17	48823123	48823123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	LUC7L3	NM_006107	exon8	c.C736T	p.R246C	GATGAGCGTCTAA	.	73.0	13.0	58.0	0.0	.	32	.	.	Atlas-SNP
EFCAB3	146779	hgsc.bcm.edu	hg19	17	60493468	60493468	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	EFCAB3	NM_001144933	exon12	c.C1251T	p.D417D	GATGGACTCTAGA	.	190.0	44.0	107.0	0.0	.	71	.	.	Atlas-SNP
ABCA5	23461	hgsc.bcm.edu	hg19	17	67300830	67300830	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ABCA5	NM_018672	exon6	c.T910A	p.F304I	AAAGGAAAAAAAG	.	113.0	41.0	57.0	0.0	.	162	.	.	Atlas-SNP
ST6GALNAC1	55808	hgsc.bcm.edu	hg19	17	74625422	74625422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ST6GALNAC1	NM_018414	exon2	c.G503T	p.G168V	TGGCCCCCATTTC	.	439.0	32.0	269.0	0.0	.	42	.	.	Atlas-SNP
PHLPP1	23239	hgsc.bcm.edu	hg19	18	60612502	60612502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PHLPP1	NM_194449	exon12	c.A3322G	p.K1108E	GAGATCAAGGTAT	.	89.0	4.0	160.0	0.0	.	164	.	.	Atlas-SNP
DNAJB1	3337	hgsc.bcm.edu	hg19	19	14629102	14629102	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	DNAJB1	NM_006145	exon1	c.C60T	p.I20I	CCGCTTGATCTCC	.	28.0	20.0	26.0	0.0	.	38	.	.	Atlas-SNP
LSM14A	26065	hgsc.bcm.edu	hg19	19	34687544	34687544	+	Silent	SNP	A	A	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	LSM14A,NS,carcinoma,0,1	LSM14A	NM_001114093	exon3	c.A291G	p.S97S	GTCCTCACTAGGC	.	137.0	63.0	166.0	0.0	.	44	.	.	Atlas-SNP
RASGRP4	115727	hgsc.bcm.edu	hg19	19	38912788	38912788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RASGRP4	NM_001146206	exon2	c.C29T	p.S10F	TGGTGGGACTTCC	.	112.0	6.0	93.0	0.0	.	54	.	.	Atlas-SNP
CYP2A7	1549	hgsc.bcm.edu	hg19	19	41387953	41387953	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CYP2A7	NM_000764	exon1	c.T163A	p.C55S	AGTCACATATGTG	.	290.0	131.0	264.0	0.0	.	71	.	.	Atlas-SNP
CABP5	56344	hgsc.bcm.edu	hg19	19	48543934	48543934	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CABP5	NM_019855	exon3	c.C166G	p.L56V	TCATGAGATTCCC	.	240.0	30.0	148.0	0.0	.	28	.	.	Atlas-SNP
ZNF776	284309	hgsc.bcm.edu	hg19	19	58264871	58264871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF776	NM_173632	exon3	c.G373A	p.D125N	TTGGATGACGATG	.	106.0	20.0	84.0	0.0	.	115	.	.	Atlas-SNP
ZNF776	284309	hgsc.bcm.edu	hg19	19	58265306	58265306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF776	NM_173632	exon3	c.G808A	p.D270N	CAATGTGATGAAT	.	82.0	10.0	68.0	0.0	.	115	.	.	Atlas-SNP
HSPA12B	116835	hgsc.bcm.edu	hg19	20	3728929	3728929	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	HSPA12B	NM_052970	exon8	c.G741A	p.S247S	CGCCTCGGTATAC	.	83.0	17.0	78.0	0.0	.	43	.	.	Atlas-SNP
RBM12	10137	hgsc.bcm.edu	hg19	20	34241969	34241969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RBM12	NM_001198840	exon2	c.C1276A	p.H426N	CCTCATGTGGTGA	.	77.0	4.0	75.0	0.0	.	93	.	.	Atlas-SNP
TGIF2	60436	hgsc.bcm.edu	hg19	20	35219383	35219383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TGIF2	NM_021809	exon3	c.C263T	p.P88L	AAGACCCTAATCA	.	97.0	47.0	86.0	0.0	.	26	.	.	Atlas-SNP
DNAJC28	54943	hgsc.bcm.edu	hg19	21	34861366	34861366	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	DNAJC28	NM_001040192	exon2	c.C335A	p.A112D	TGACTGGCATTTG	.	81.0	4.0	96.0	0.0	.	47	.	.	Atlas-SNP
UFD1L	7353	hgsc.bcm.edu	hg19	22	19463069	19463069	+	Silent	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	UFD1L	NM_005659	exon2	c.C60G	p.S20S	CTGTGTGGAGAAG	.	137.0	22.0	117.0	0.0	.	25	.	.	Atlas-SNP
RFPL3	10738	hgsc.bcm.edu	hg19	22	32756294	32756294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RFPL3	NM_001098535	exon2	c.C429A	p.D143E	TGACGACCTCAGG	.	348.0	81.0	288.0	0.0	.	91	.	.	Atlas-SNP
FBLN1	2192	hgsc.bcm.edu	hg19	22	45939311	45939311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	FBLN1	NM_006487	exon11	c.G1226A	p.R409H	CCGGGCGCCTGTG	.	50.0	24.0	35.0	0.0	.	143	.	.	Atlas-SNP
CYLC1	1538	hgsc.bcm.edu	hg19	X	83128349	83128349	+	Silent	SNP	T	T	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CYLC1	NM_021118	exon4	c.T633A	p.T211T	AAACACTGAATTC	.	64.0	28.0	84.0	0.0	.	272	.	.	Atlas-SNP
SUPT16H	11198	hgsc.bcm.edu	hg19	14	21821900	21821902	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	TCC	TCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SUPT16H	NM_007192	exon24	c.2881_2883del	p.961_961del	.	.	247.0	39.0	211.0	0.0	.	84	.	.	Atlas-Indel,Pindel
CAPN6	827	hgsc.bcm.edu	hg19	X	110497516	110497516	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CAPN6	NM_014289	exon3	c.282delG	p.E94fs	.	.	88.0	74.0	123.0	0.0	.	120	.	.	Atlas-Indel,Pindel
SCN9A	6335	hgsc.bcm.edu	hg19	2	167056365	167056366	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SCN9A	NM_002977	exon27	c.4751_4752del	p.1584_1584del	.	.	122.0	51.0	96.0	0.0	.	296	.	.	Atlas-Indel,Pindel
SLC1A1	6505	hgsc.bcm.edu	hg19	9	4583118	4583133	+	Frame_Shift_Del	DEL	CCGTGGGCCTGCCCGC	CCGTGGGCCTGCCCGC	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	CCGTGGGCCTGCCCGC	CCGTGGGCCTGCCCGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SLC1A1	NM_004170	exon11	c.1273_1288del	p.425_430del	.	.	165.0	13.0	196.0	0.0	.	43	.	.	Atlas-INDEL
SLC1A1	6505	hgsc.bcm.edu	hg19	9	4583116	4583116	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SLC1A1	NM_004170	exon11	c.1271delG	p.S424fs	.	.	168.0	13.0	195.0	0.0	.	43	.	.	Atlas-INDEL
SLC30A10	55532	hgsc.bcm.edu	hg19	1	220089062	220089067	+	In_Frame_Del	DEL	AAGTCC	AAGTCC	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	AAGTCC	AAGTCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	SLC30A10,NS,carcinoma,0,1	SLC30A10	NM_018713	exon4	c.1183_1188del	p.395_396del	.	.	244.0	22.0	175.0	0.0	.	58	.	.	Atlas-Indel,Pindel
POLR2A	5430	hgsc.bcm.edu	hg19	17	7417050	7417070	+	In_Frame_Del	DEL	CCCAGCTACAGCCCCAGCTCG	CCCAGCTACAGCCCCAGCTCG	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	CCCAGCTACAGCCCCAGCTCG	CCCAGCTACAGCCCCAGCTCG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	POLR2A	NM_000937	exon29	c.5466_5486del	p.1822_1829del	.	.	127.0	37.0	207.0	0.0	.	157	.	.	Atlas-Indel,Pindel
SLC1A1	6505	hgsc.bcm.edu	hg19	9	4583116	4583133	+	In_Frame_Del	DEL	TGCCGTGGGCCTGCCCGC	TGCCGTGGGCCTGCCCGC	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	TGCCGTGGGCCTGCCCGC	TGCCGTGGGCCTGCCCGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SLC1A1	NM_004170	exon11	c.1271_1288del	p.424_430del	.	.	184.0	20.0	194.0	0.0	.	43	.	.	Pindel
ALB	213	hgsc.bcm.edu	hg19	4	74276072	74276073	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ALB	NM_000477	exon6	c.658_659del	p.220_220del	.	.	137.0	28.0	140.0	0.0	.	132	.	.	Pindel
OR5T1	390155	hgsc.bcm.edu	hg19	11	56044023	56044051	+	Frame_Shift_Del	DEL	TTTGCGGAACAAAGATGTAAAGGAGGCAA	TTTGCGGAACAAAGATGTAAAGGAGGCAA	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	TTTGCGGAACAAAGATGTAAAGGAGGCAA	TTTGCGGAACAAAGATGTAAAGGAGGCAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	OR5T1	NM_001004745	exon1	c.908_936del	p.303_312del	.	.	80.0	12.0	138.0	0.0	.	95	.	.	Pindel
TP53	7157	hgsc.bcm.edu	hg19	17	7579380	7579380	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TP53	NM_001126112	exon4	c.308delA	p.Y103fs	.	.	87.0	40.0	153.0	0.0	.	33396	.	.	Pindel