Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
CEP104	9731	hgsc.bcm.edu	hg19	1	3750533	3750533	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CEP104	NM_014704	exon12	c.A1552T	p.S518C	GTTTACTCAGTTT	.	93.0	30.0	148.0	0.0	.	79	.	.	Atlas-SNP
AKR7A2	8574	hgsc.bcm.edu	hg19	1	19634996	19634996	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	AKR7A2	NM_003689	exon2	c.A439G	p.T147A	CCGGGGTGCCGTG	.	115.0	41.0	163.0	0.0	.	19	.	.	Atlas-SNP
NR0B2	8431	hgsc.bcm.edu	hg19	1	27240341	27240341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NR0B2	NM_021969	exon1	c.G91A	p.A31T	GGACAGCCTTGAG	.	34.0	10.0	41.0	0.0	.	14	.	.	Atlas-SNP
ANGPTL3	27329	hgsc.bcm.edu	hg19	1	63063267	63063267	+	Silent	SNP	T	T	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ANGPTL3	NM_014495	exon1	c.A30A	p.X10X	TTTTATTGTTCCT	.	47.0	16.0	54.0	0.0	.	42	.	.	Atlas-SNP
CLCA1	1179	hgsc.bcm.edu	hg19	1	86964423	86964423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CLCA1	NM_001285	exon13	c.C2282T	p.A761V	TGAAGGCGGAAAT	.	132.0	25.0	138.0	0.0	.	109	.	.	Atlas-SNP
BCL9	607	hgsc.bcm.edu	hg19	1	147086412	147086412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	BCL9	NM_004326	exon6	c.A557G	p.N186S	TGGCCAATAAGTA	.	180.0	63.0	162.0	0.0	.	150	.	.	Atlas-SNP
FCRL1	115350	hgsc.bcm.edu	hg19	1	157768011	157768011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	FCRL1	NM_001159398	exon8	c.C1054A	p.Q352K	ACTCTTGGGGTAG	.	173.0	10.0	78.0	0.0	.	164	.	.	Atlas-SNP
MNDA	4332	hgsc.bcm.edu	hg19	1	158813151	158813151	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	MNDA,NS,carcinoma,0,1	MNDA	NM_002432	exon3	c.C348T	p.P116P	TGCACCCACCGCA	.	315.0	65.0	181.0	0.0	.	147	.	.	Atlas-SNP
TAGLN2	8407	hgsc.bcm.edu	hg19	1	159888612	159888612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TAGLN2	NM_003564	exon5	c.G578A	p.G193E	GGCATCCCGTAGC	.	134.0	84.0	151.0	0.0	.	21	.	.	Atlas-SNP
FAM5B	57795	hgsc.bcm.edu	hg19	1	177245347	177245347	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	FAM5B,caecum,carcinoma,0,1	FAM5B	NM_021165	exon6	c.G789A	p.L263L	GGTGCTGCTGCCT	.	240.0	27.0	143.0	0.0	.	191	.	.	Atlas-SNP
PLA2G4A	5321	hgsc.bcm.edu	hg19	1	186948508	186948508	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	PLA2G4A,NS,carcinoma,0,1	PLA2G4A	NM_024420	exon17	c.A2022G	p.P674P	TGACCCAGAATCA	.	168.0	80.0	180.0	0.0	.	125	.	.	Atlas-SNP
KCNK2	3776	hgsc.bcm.edu	hg19	1	215408294	215408294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KCNK2	NM_001017425	exon7	c.C1087T	p.R363W	ATCAAGCGGAAGC	.	146.0	39.0	62.0	0.0	.	135	.	.	Atlas-SNP
PQLC3	130814	hgsc.bcm.edu	hg19	2	11300640	11300640	+	Silent	SNP	G	G	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PQLC3	NM_152391	exon2	c.G192C	p.L64L	GCCGCTGACCTAC	.	134.0	7.0	212.0	0.0	.	8	.	.	Atlas-SNP
ATL2	64225	hgsc.bcm.edu	hg19	2	38525447	38525447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ATL2	NM_001135673	exon12	c.C1471A	p.L491M	CAGTCAGTCCTGA	.	59.0	5.0	73.0	0.0	.	49	.	.	Atlas-SNP
CNNM4	26504	hgsc.bcm.edu	hg19	2	97428070	97428070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CNNM4	NM_020184	exon1	c.A1334G	p.Y445C	GCTTCTATAACCA	.	198.0	79.0	266.0	0.0	.	48	.	.	Atlas-SNP
IL36A	27179	hgsc.bcm.edu	hg19	2	113763592	113763592	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	IL36A	NM_014440	exon2	c.A52G	p.I18V	CAGGATATCAATC	.	95.0	38.0	119.0	0.0	.	17	.	.	Atlas-SNP
BAZ2B	29994	hgsc.bcm.edu	hg19	2	160287506	160287506	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	BAZ2B	NM_013450	exon10	c.G2062C	p.G688R	AGTGACCTGTGAG	.	135.0	8.0	122.0	0.0	.	196	.	.	Atlas-SNP
SLC4A3	6508	hgsc.bcm.edu	hg19	2	220503556	220503556	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SLC4A3	NM_201574	exon19	c.C3069A	p.V1023V	CCTCGTCCTCATC	.	81.0	25.0	139.0	0.0	.	144	.	.	Atlas-SNP
FARP2	9855	hgsc.bcm.edu	hg19	2	242430491	242430491	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	FARP2	NM_014808	exon23	c.A2520G	p.K840K	GGAGAAAGAGAAG	.	243.0	79.0	442.0	1.0	.	92	.	.	Atlas-SNP
CHL1	10752	hgsc.bcm.edu	hg19	3	439928	439928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CHL1	NM_006614	exon25	c.T3113C	p.I1038T	GGAAGATATCAGG	.	69.0	12.0	83.0	0.0	.	242	.	.	Atlas-SNP
NR2C2	7182	hgsc.bcm.edu	hg19	3	15062430	15062430	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NR2C2	NM_003298	exon6	c.A604G	p.K202E	GGCATGAAAATGG	.	77.0	4.0	68.0	0.0	.	44	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	G	rs121913396	bycluster	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	CTNNB1,gallbladder,other,+1,128	CTNNB1	NM_001098209	exon3	c.A95G	p.D32G	ACCTGGACTCTGG	.	232.0	73.0	170.0	0.0	.	4904	.	.	Atlas-SNP
CYP8B1	1582	hgsc.bcm.edu	hg19	3	42916920	42916920	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CYP8B1	NM_004391	exon1	c.A389T	p.H130L	CTCAGATGCTTGG	.	133.0	39.0	158.0	0.0	.	59	.	.	Atlas-SNP
SLC38A3	10991	hgsc.bcm.edu	hg19	3	50251707	50251707	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SLC38A3	NM_006841	exon2	c.C75T	p.V25V	CCCGGTCATCACC	.	135.0	58.0	207.0	0.0	.	22	.	.	Atlas-SNP
CPB1	1360	hgsc.bcm.edu	hg19	3	148552327	148552327	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CPB1	NM_001871	exon3	c.C190A	p.H64N	AAACCTCACAGTA	.	190.0	89.0	191.0	0.0	.	74	.	.	Atlas-SNP
PEX5L	51555	hgsc.bcm.edu	hg19	3	179592187	179592187	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PEX5L	NM_016559	exon7	c.A654G	p.P218P	CAGTTCTGGTTGA	.	51.0	17.0	39.0	0.0	.	104	.	.	Atlas-SNP
LGI2	55203	hgsc.bcm.edu	hg19	4	25005084	25005084	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	LGI2	NM_018176	exon8	c.T1627G	p.L543V	AACTTAAGTCAAC	.	46.0	15.0	77.0	0.0	.	62	.	.	Atlas-SNP
SEC24B	10427	hgsc.bcm.edu	hg19	4	110442575	110442575	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SEC24B	NM_006323	exon14	c.2302-1G>A	.	TTCTCAGCTTATA	.	69.0	16.0	123.0	0.0	.	186	.	.	Atlas-SNP
FGA	2243	hgsc.bcm.edu	hg19	4	155505929	155505929	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	FGA	NM_000508	exon6	c.A1948G	p.I650V	GCTTGATATTGAA	.	39.0	18.0	29.0	0.0	.	179	.	.	Atlas-SNP
WDR17	116966	hgsc.bcm.edu	hg19	4	177067183	177067183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	WDR17,NS,carcinoma,0,1	WDR17	NM_170710	exon13	c.C1639T	p.R547C	AATGTTCGTGTTT	.	93.0	16.0	75.0	2.0	.	198	.	.	Atlas-SNP
BASP1	10409	hgsc.bcm.edu	hg19	5	17275846	17275846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	BASP1	NM_006317	exon2	c.C521A	p.P174H	CAAAACCCGGCAG	.	35.0	16.0	52.0	0.0	.	29	.	.	Atlas-SNP
RAI14	26064	hgsc.bcm.edu	hg19	5	34824058	34824058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	RAI14	NM_001145525	exon17	c.C2120T	p.S707F	TGAAGTCTCAGTA	.	252.0	40.0	297.0	0.0	.	100	.	.	Atlas-SNP
NIPBL	25836	hgsc.bcm.edu	hg19	5	37017238	37017238	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NIPBL	NM_015384	exon24	c.G4894C	p.G1632R	GATCAAGGATCTA	.	169.0	13.0	206.0	0.0	.	513	.	.	Atlas-SNP
RASA1	5921	hgsc.bcm.edu	hg19	5	86672363	86672363	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	RASA1	NM_002890	exon16	c.A2165C	p.E722A	AAGAAGAGTACAG	.	94.0	9.0	55.0	0.0	.	213	.	.	Atlas-SNP
PCDHB10	56126	hgsc.bcm.edu	hg19	5	140572647	140572647	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PCDHB10	NM_018930	exon1	c.C522T	p.P174P	CAGCCCCAACTCT	.	186.0	67.0	323.0	0.0	.	177	.	.	Atlas-SNP
DUSP22	56940	hgsc.bcm.edu	hg19	6	348175	348175	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	DUSP22	NM_020185	exon6	c.G336C	p.E112D	CTGGGAGGATGCC	.	273.0	15.0	305.0	0.0	.	55	.	.	Atlas-SNP
TNXB	7148	hgsc.bcm.edu	hg19	6	32037394	32037394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TNXB	NM_019105	exon15	c.G5523T	p.K1841N	CAGCAGCTTGTAC	.	79.0	8.0	55.0	0.0	.	553	.	.	Atlas-SNP
TNXB	7148	hgsc.bcm.edu	hg19	6	32041646	32041646	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TNXB	NM_019105	exon12	c.C4459A	p.P1487T	AGTTGGGGGTCAC	.	134.0	31.0	111.0	0.0	.	553	.	.	Atlas-SNP
PKHD1	5314	hgsc.bcm.edu	hg19	6	51907882	51907882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PKHD1	NM_170724	exon27	c.G2872T	p.D958Y	GGGAGTCACCAGA	.	139.0	33.0	55.0	0.0	.	927	.	.	Atlas-SNP
PHF10	55274	hgsc.bcm.edu	hg19	6	170112622	170112622	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PHF10	NM_018288	exon8	c.G817T	p.E273X	GCAGCTCATCTGG	.	63.0	14.0	129.0	0.0	.	76	.	.	Atlas-SNP
C7orf26	79034	hgsc.bcm.edu	hg19	7	6631388	6631388	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	C7orf26	NM_024067	exon2	c.C304T	p.Q102X	AGCCCTCAAGGGA	.	163.0	20.0	202.0	0.0	.	33	.	.	Atlas-SNP
HGF	3082	hgsc.bcm.edu	hg19	7	81372744	81372744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	HGF,NS,carcinoma,0,1	HGF	NM_000601	exon7	c.G790T	p.D264Y	GGCCATCGGGATT	.	181.0	23.0	85.0	0.0	.	171	.	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	hg19	7	82545309	82545309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PCLO	NM_014510	exon7	c.C11993T	p.A3998V	GAAACAGCAAATG	.	51.0	22.0	27.0	0.0	.	1506	.	.	Atlas-SNP
RELN	5649	hgsc.bcm.edu	hg19	7	103179563	103179563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	RELN	NM_173054	exon45	c.A7142G	p.D2381G	GCGAAGTCTATCT	.	150.0	68.0	104.0	0.0	.	593	.	.	Atlas-SNP
RP1	6101	hgsc.bcm.edu	hg19	8	55534004	55534004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	RP1	NM_006269	exon2	c.A478G	p.R160G	GTCTTCAGGAATG	.	243.0	37.0	97.0	0.0	.	429	.	.	Atlas-SNP
TMEM67	91147	hgsc.bcm.edu	hg19	8	94817076	94817076	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TMEM67	NM_153704	exon23	c.A2409G	p.E803E	TATGGAAGAAATG	.	120.0	7.0	49.0	0.0	.	187	.	.	Atlas-SNP
KIAA1429	25962	hgsc.bcm.edu	hg19	8	95523540	95523540	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KIAA1429	NM_015496	exon13	c.A3263G	p.N1088S	GTATTATTGGCCA	.	180.0	23.0	58.0	0.0	.	176	.	.	Atlas-SNP
KIAA1429	25962	hgsc.bcm.edu	hg19	8	95543221	95543221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KIAA1429	NM_015496	exon6	c.G577A	p.D193N	CATCATCATCAGG	.	116.0	82.0	47.0	0.0	.	176	.	.	Atlas-SNP
UQCRB	7381	hgsc.bcm.edu	hg19	8	97245396	97245396	+	Missense_Mutation	SNP	A	A	C	rs376775585		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	UQCRB	NM_001254752	exon2	c.T79G	p.F27V	TATTGAATCCTGC	.	145.0	14.0	40.0	0.0	.	17	.	.	Atlas-SNP
TRAPPC9	83696	hgsc.bcm.edu	hg19	8	141468638	141468638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TRAPPC9	NM_031466	exon1	c.G26A	p.R9H	GGCGCGCGGTCTT	.	59.0	11.0	24.0	0.0	.	114	.	.	Atlas-SNP
BAI1	575	hgsc.bcm.edu	hg19	8	143623422	143623422	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	BAI1	NM_001702	exon27	c.T3827C	p.F1276S	CCAATTTCAACAG	.	138.0	13.0	85.0	0.0	.	146	.	.	Atlas-SNP
NPR2	4882	hgsc.bcm.edu	hg19	9	35809218	35809218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NPR2	NM_003995	exon21	c.G3052A	p.E1018K	CAGCTAGAGCTTC	.	49.0	18.0	48.0	0.0	.	162	.	.	Atlas-SNP
TLR4	7099	hgsc.bcm.edu	hg19	9	120476662	120476662	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TLR4	NM_138554	exon3	c.G2256C	p.E752D	ATATGAGATTGCT	.	73.0	5.0	53.0	0.0	.	220	.	.	Atlas-SNP
CNTRL	11064	hgsc.bcm.edu	hg19	9	123937425	123937425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CNTRL	NM_007018	exon41	c.G6877A	p.A2293T	ACCTCTGCAGATT	.	105.0	14.0	71.0	0.0	.	161	.	.	Atlas-SNP
GOLGA1	2800	hgsc.bcm.edu	hg19	9	127685398	127685398	+	Missense_Mutation	SNP	C	C	A	rs138655913	alternate_allele	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	GOLGA1	NM_002077	exon8	c.G537T	p.Q179H	TAGTTCCTGCTGC	.	33.0	15.0	27.0	0.0	.	60	.	C|1.000;T|0.000	Atlas-SNP
PPP2R4	5524	hgsc.bcm.edu	hg19	9	131898785	131898785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PPP2R4	NM_178001	exon8	c.A701G	p.Y234C	AAACATACAGGAT	.	134.0	51.0	179.0	0.0	.	32	.	.	Atlas-SNP
FRMD4A	55691	hgsc.bcm.edu	hg19	10	13708157	13708157	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	FRMD4A	NM_018027	exon18	c.A1543C	p.N515H	TCTCATTGATTGC	.	64.0	28.0	81.0	0.0	.	108	.	.	Atlas-SNP
ITGA8	8516	hgsc.bcm.edu	hg19	10	15559170	15559170	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ITGA8	NM_003638	exon30	c.C3179G	p.T1060S	TCAGGGGTCTTGT	.	36.0	5.0	25.0	0.0	.	230	.	.	Atlas-SNP
MAP3K8	1326	hgsc.bcm.edu	hg19	10	30747090	30747090	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	MAP3K8	NM_001244134	exon6	c.C951A	p.L317L	CACGCTCATCCAC	.	150.0	54.0	147.0	0.0	.	46	.	.	Atlas-SNP
PRKG1	5592	hgsc.bcm.edu	hg19	10	54031194	54031194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PRKG1	NM_006258	exon11	c.C1258T	p.H420Y	CAGGAGCACATCC	.	100.0	32.0	42.0	0.0	.	167	.	.	Atlas-SNP
SIRT3	23410	hgsc.bcm.edu	hg19	11	230535	230535	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SIRT3	NM_012239	exon4	c.T724G	p.S242A	GCTTTGAGGCAGG	.	111.0	37.0	165.0	0.0	.	28	.	.	Atlas-SNP
NUP98	4928	hgsc.bcm.edu	hg19	11	3797196	3797196	+	Silent	SNP	A	A	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	NUP98,NS,carcinoma,0,1	NUP98	NM_016320	exon5	c.T411A	p.S137S	AGGATTAGAGGTG	.	163.0	37.0	200.0	0.0	.	149	.	.	Atlas-SNP
HBE1	3046	hgsc.bcm.edu	hg19	11	5291042	5291042	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	HBE1	NM_005330	exon1	c.G79C	p.E27Q	AGGCTTCACCTCC	.	90.0	10.0	58.0	0.0	.	42	.	.	Atlas-SNP
NELL1	4745	hgsc.bcm.edu	hg19	11	21555918	21555918	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NELL1	NM_006157	exon16	c.1646-2A>G	.	TGAGGCAGATATT	.	103.0	29.0	66.0	0.0	.	179	.	.	Atlas-SNP
TRIM51	84767	hgsc.bcm.edu	hg19	11	55659022	55659022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	.	NM_032681	exon7	c.G1273A	p.V425I	GTTGATGTTGATC	.	39.0	12.0	34.0	0.0	.	.	.	.	Atlas-SNP
MAP3K11	4296	hgsc.bcm.edu	hg19	11	65380716	65380716	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	MAP3K11,colon,carcinoma,0,1	MAP3K11	NM_002419	exon1	c.T512A	p.L171Q	TGTGCCAGCATGG	.	85.0	31.0	149.0	0.0	.	67	.	.	Atlas-SNP
LRP5	4041	hgsc.bcm.edu	hg19	11	68216342	68216342	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	LRP5	NM_002335	exon23	c.A4652T	p.D1551V	ACAGCGACTACAG	.	62.0	24.0	92.0	0.0	.	136	.	.	Atlas-SNP
MMP3	4314	hgsc.bcm.edu	hg19	11	102711281	102711281	+	Silent	SNP	G	G	T	rs375553123	alternate_allele	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	MMP3,colon,carcinoma,0,1	MMP3	NM_002422	exon5	c.C669A	p.S223S	ACCCAGGGAGTGG	.	65.0	3.0	101.0	0.0	.	60	.	.	Atlas-SNP
PDGFD	80310	hgsc.bcm.edu	hg19	11	103814257	103814257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	PDGFD_ENST00000393158,colon,carcinoma,0,2	PDGFD	NM_025208	exon5	c.G695T	p.W232L	TCTTGCCATGACT	.	119.0	27.0	82.0	0.0	.	125	.	.	Atlas-SNP
ZC3H12C	85463	hgsc.bcm.edu	hg19	11	110034060	110034060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ZC3H12C	NM_033390	exon5	c.A1211G	p.K404R	TGAGGAAGAAACC	.	73.0	5.0	90.0	0.0	.	83	.	.	Atlas-SNP
DSCAML1	57453	hgsc.bcm.edu	hg19	11	117321317	117321317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	DSCAML1	NM_020693	exon20	c.G3836A	p.G1279E	ATCACCCCGTTGG	.	47.0	9.0	69.0	0.0	.	286	.	.	Atlas-SNP
AKAP3	10566	hgsc.bcm.edu	hg19	12	4737496	4737496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	AKAP3	NM_006422	exon4	c.C572T	p.A191V	TCTGGGGCAGCAT	.	94.0	37.0	102.0	0.0	.	212	.	.	Atlas-SNP
PIK3C2G	5288	hgsc.bcm.edu	hg19	12	18691110	18691110	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PIK3C2G	NM_004570	exon24	c.T3221G	p.F1074C	TCATTTTTACTTC	.	70.0	26.0	25.0	0.0	.	315	.	.	Atlas-SNP
ARID2	196528	hgsc.bcm.edu	hg19	12	46245723	46245723	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	ARID2,NS,carcinoma,0,2	ARID2	NM_152641	exon15	c.C3817T	p.R1273X	TGCCGACGAGGAG	.	67.0	17.0	64.0	0.0	.	311	.	.	Atlas-SNP
COL2A1	1280	hgsc.bcm.edu	hg19	12	48391816	48391816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	COL2A1	NM_001844	exon5	c.A374G	p.Q125R	CTTACCTGAGGCC	.	100.0	39.0	156.0	0.0	.	368	.	.	Atlas-SNP
ANAPC7	51434	hgsc.bcm.edu	hg19	12	110819712	110819712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ANAPC7	NM_016238	exon8	c.A1079G	p.Y360C	CCTAAATAGAGGG	.	47.0	18.0	64.0	0.0	.	68	.	.	Atlas-SNP
XPO4	64328	hgsc.bcm.edu	hg19	13	21361634	21361634	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	XPO4,NS,carcinoma,0,1	XPO4	NM_022459	exon21	c.C3151G	p.R1051G	AGTGCCGTGTTGC	.	92.0	31.0	139.0	0.0	.	153	.	.	Atlas-SNP
ACIN1	22985	hgsc.bcm.edu	hg19	14	23530298	23530298	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ACIN1	NM_014977	exon18	c.A3694G	p.S1232G	CCTGGCTGTCAGT	.	93.0	40.0	156.0	0.0	.	147	.	.	Atlas-SNP
MYH7	4625	hgsc.bcm.edu	hg19	14	23898464	23898464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	MYH7	NM_000257	exon13	c.G1231A	p.V411I	TGGTGACGTACTC	.	169.0	62.0	215.0	0.0	.	349	.	.	Atlas-SNP
TINF2	26277	hgsc.bcm.edu	hg19	14	24709083	24709083	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TINF2	NM_001099274	exon9	c.T1276G	p.C426G	ATTCACAGAGAGT	.	171.0	69.0	228.0	0.0	.	61	.	.	Atlas-SNP
SGPP1	81537	hgsc.bcm.edu	hg19	14	64165361	64165361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	SGPP1,NS,carcinoma,0,1	SGPP1	NM_030791	exon2	c.G700A	p.G234R	TCAGTCCATATAT	.	94.0	24.0	158.0	0.0	.	29	.	.	Atlas-SNP
ZFYVE26	23503	hgsc.bcm.edu	hg19	14	68265045	68265045	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ZFYVE26	NM_015346	exon11	c.T1934A	p.M645K	CTTGGCATTGTAT	.	121.0	54.0	163.0	0.0	.	223	.	.	Atlas-SNP
BTBD1	53339	hgsc.bcm.edu	hg19	15	83698992	83698992	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	BTBD1	NM_025238	exon5	c.C951A	p.Y317X	GTCAATGTATTCA	.	132.0	10.0	140.0	0.0	.	32	.	.	Atlas-SNP
NOD2	64127	hgsc.bcm.edu	hg19	16	50745410	50745410	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NOD2	NM_022162	exon4	c.T1588C	p.S530P	CCAGACTCAGCTT	.	47.0	17.0	80.0	0.0	.	118	.	.	Atlas-SNP
C16orf46	123775	hgsc.bcm.edu	hg19	16	81097428	81097428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	C16orf46	NM_001100873	exon2	c.C133T	p.L45F	CATCGAGAAGACA	.	68.0	29.0	94.0	0.0	.	57	.	.	Atlas-SNP
AIPL1	23746	hgsc.bcm.edu	hg19	17	6328940	6328940	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	AIPL1	NM_014336	exon6	c.C995G	p.T332R	GGCTGCGTGGCAC	.	26.0	11.0	26.0	0.0	.	34	.	.	Atlas-SNP
SLC47A1	55244	hgsc.bcm.edu	hg19	17	19445791	19445791	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SLC47A1	NM_018242	exon2	c.T221G	p.V74G	ATGCAGTCACGCT	.	94.0	13.0	148.0	0.0	.	55	.	.	Atlas-SNP
UTP6	55813	hgsc.bcm.edu	hg19	17	30190389	30190389	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	UTP6	NM_018428	exon19	c.G1783C	p.G595R	AATGGCCAGTCTG	.	101.0	6.0	132.0	0.0	.	46	.	.	Atlas-SNP
KRTAP9-4	85280	hgsc.bcm.edu	hg19	17	39406008	39406008	+	Silent	SNP	A	A	C	rs79961737		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	KRTAP9-4,NS,carcinoma,0,1	KRTAP9-4	NM_033191	exon1	c.A36C	p.T12T	GCCTACATGCTGC	.	187.0	9.0	162.0	2.0	.	30	.	A|0.875;C|0.125	Atlas-SNP
COL1A1	1277	hgsc.bcm.edu	hg19	17	48264129	48264129	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	COL1A1	NM_000088	exon48	c.T3686A	p.L1229H	ACCTCGAGGTCAC	.	87.0	42.0	137.0	0.0	.	158	.	.	Atlas-SNP
FASN	2194	hgsc.bcm.edu	hg19	17	80040959	80040959	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	FASN	NM_004104	exon33	c.G5598A	p.K1866K	GGCCCCCTTCAGC	.	69.0	35.0	80.0	0.0	.	154	.	.	Atlas-SNP
LAMA3	3909	hgsc.bcm.edu	hg19	18	21441703	21441703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	LAMA3	NM_001127717	exon35	c.C4516A	p.L1506I	GCGGATCTCCAGG	.	136.0	58.0	125.0	0.0	.	397	.	.	Atlas-SNP
COLGALT1	79709	hgsc.bcm.edu	hg19	19	17691557	17691557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	.	NM_024656	exon11	c.C1444T	p.P482S	GCTGTGCCTCGCG	.	71.0	29.0	99.0	0.0	.	.	.	.	Atlas-SNP
APLP1	333	hgsc.bcm.edu	hg19	19	36363455	36363455	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	APLP1	NM_005166	exon7	c.C921T	p.H307H	TGAGCACGAGGGG	.	126.0	50.0	160.0	0.0	.	77	.	.	Atlas-SNP
ZNF816	125893	hgsc.bcm.edu	hg19	19	53453569	53453569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ZNF816	NM_001202457	exon4	c.G1459T	p.G487C	CCTTGCCACATTC	.	52.0	10.0	68.0	0.0	.	73	.	.	Atlas-SNP
ZNF471	57573	hgsc.bcm.edu	hg19	19	57036179	57036179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ZNF471	NM_020813	exon5	c.A743G	p.H248R	GGCAACACCTTGC	.	80.0	34.0	79.0	0.0	.	99	.	.	Atlas-SNP
ZNF17	7565	hgsc.bcm.edu	hg19	19	57931234	57931234	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ZNF17	NM_006959	exon3	c.T374G	p.L125R	AGAAGCTCACCAG	.	162.0	10.0	187.0	0.0	.	49	.	.	Atlas-SNP
PTPRA	5786	hgsc.bcm.edu	hg19	20	3002002	3002002	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PTPRA	NM_002836	exon18	c.G1089A	p.G363G	CTATGGGAATATT	.	223.0	78.0	264.0	0.0	.	75	.	.	Atlas-SNP
TMPRSS15	5651	hgsc.bcm.edu	hg19	21	19647566	19647566	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TMPRSS15	NM_002772	exon24	c.C2852A	p.T951N	TTTTCAGTAATGT	.	91.0	4.0	92.0	0.0	.	189	.	.	Atlas-SNP
PRDM15	63977	hgsc.bcm.edu	hg19	21	43221871	43221871	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PRDM15	NM_022115	exon31	c.C4053T	p.T1351T	ACCCAGGGTCACC	.	182.0	31.0	271.0	0.0	.	110	.	.	Atlas-SNP
COL18A1	80781	hgsc.bcm.edu	hg19	21	46888317	46888317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	COL18A1	NM_030582	exon2	c.C808T	p.R270C	TTCTTCCGTGACT	.	126.0	38.0	226.0	0.0	.	129	.	.	Atlas-SNP
ADORA2A	135	hgsc.bcm.edu	hg19	22	24837383	24837383	+	Missense_Mutation	SNP	G	G	A	rs201827862		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ADORA2A	NM_000675	exon3	c.G1165A	p.E389K	AGCCATGAGCTCA	.	160.0	59.0	234.0	0.0	.	44	.	.	Atlas-SNP
CARD10	29775	hgsc.bcm.edu	hg19	22	37888678	37888678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CARD10	NM_014550	exon17	c.C2608T	p.R870W	CCAGCCGGGAGCT	.	119.0	5.0	154.0	0.0	.	55	.	.	Atlas-SNP
LDOC1L	84247	hgsc.bcm.edu	hg19	22	44893045	44893045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	LDOC1L	NM_032287	exon2	c.C392T	p.P131L	TCACCCGGGAAGC	.	55.0	30.0	64.0	0.0	.	24	.	.	Atlas-SNP
SBF1	6305	hgsc.bcm.edu	hg19	22	50886721	50886721	+	Silent	SNP	A	A	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SBF1	NM_002972	exon38	c.T5304A	p.A1768A	GCGGGCAGCCTGA	.	90.0	61.0	161.0	1.0	.	211	.	.	Atlas-SNP
MAGEE2	139599	hgsc.bcm.edu	hg19	X	75003638	75003638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	MAGEE2	NM_138703	exon1	c.C1249T	p.R417C	TGACACGGTTGCC	.	91.0	62.0	96.0	0.0	.	94	.	.	Atlas-SNP
ND1	10625	hgsc.bcm.edu	hg19	MT	3767	3767	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	.	ENST00000361390	exon1	c.T461C	p.L154S	CAACATTACTAAT	.	36.0	25.0	22.0	0.0	.	.	.	.	Atlas-SNP
BPIFC	254240	hgsc.bcm.edu	hg19	22	32810334	32810335	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	.	NM_174932	exon15	c.1480_1481insT	p.L494fs	.	.	209.0	22.0	202.0	0.0	.	.	.	.	Atlas-Indel,Pindel
DNAAF1	123872	hgsc.bcm.edu	hg19	16	84209627	84209627	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	DNAAF1	NM_178452	exon11	c.1786delG	p.E596fs	.	.	99.0	33.0	193.0	0.0	.	81	.	.	Atlas-Indel,Pindel
DDX42	11325	hgsc.bcm.edu	hg19	17	61864631	61864631	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	DDX42,NS,carcinoma,0,1	DDX42	NM_007372	exon3	c.221delC	p.A74fs	.	.	95.0	25.0	115.0	0.0	.	86	.	.	Atlas-Indel,Pindel
HOOK2	29911	hgsc.bcm.edu	hg19	19	12886218	12886218	+	Splice_Site	DEL	C	C	-	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	HOOK2	NM_001100176	exon2	c.45+2G>-	.	.	.	95.0	26.0	130.0	0.0	.	73	.	.	Atlas-Indel,Pindel
KRT72	140807	hgsc.bcm.edu	hg19	12	52979943	52979943	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KRT72	NM_080747	exon9	c.1360delA	p.T454fs	.	.	81.0	28.0	67.0	0.0	.	70	.	.	Atlas-Indel,Pindel
MPI	4351	hgsc.bcm.edu	hg19	15	75182913	75182914	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	MPI	NM_002435	exon2	c.62_63insG	p.M21fs	.	.	80.0	21.0	112.0	0.0	.	32	.	.	Atlas-Indel,Pindel
NELFE	7936	hgsc.bcm.edu	hg19	6	31926222	31926223	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	.	NM_002904	exon2	c.2_3insA	p.M1fs	.	.	111.0	27.0	93.0	0.0	.	.	.	.	Atlas-Indel,Pindel
TTN	7273	hgsc.bcm.edu	hg19	2	179590290	179590290	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TTN	NM_001267550	exon71	c.20642delA	p.Q6881fs	.	.	41.0	11.0	59.0	0.0	.	18412	.	.	Atlas-INDEL
NT5C3A	0	hgsc.bcm.edu	hg19	7	33057096	33057100	+	Frame_Shift_Del	DEL	ATGAT	ATGAT	-	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	ATGAT	ATGAT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	.	NM_001002010	exon7	c.660_664del	p.220_222del	.	.	134.0	24.0	154.0	0.0	.	.	.	.	Atlas-Indel,Pindel
SPTA1	6708	hgsc.bcm.edu	hg19	1	158614175	158614175	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SPTA1	NM_003126	exon30	c.4207delA	p.N1403fs	.	.	163.0	42.0	77.0	0.0	.	720	.	.	Atlas-Indel,Pindel
CIITA	4261	hgsc.bcm.edu	hg19	16	11016299	11016300	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CIITA	NM_000246	exon18	c.3269_3270insG	p.Q1090fs	.	.	141.0	35.0	196.0	0.0	.	92	.	.	Pindel