Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
LOC440563	0	hgsc.bcm.edu	hg19	1	13183341	13183341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	.	NM_001136561	exon2	c.G532A	p.D178N	GGTCATCTCCTTT	.	170.0	21.0	130.0	0.0	.	.	.	.	Atlas-SNP
IPP	3652	hgsc.bcm.edu	hg19	1	46184955	46184955	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	IPP	NM_001145349	exon6	c.A1106C	p.Q369P	GTCCACTGTTTAG	.	72.0	43.0	68.0	0.0	.	66	.	.	Atlas-SNP
LRRC7	57554	hgsc.bcm.edu	hg19	1	70505455	70505455	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	LRRC7	NM_020794	exon19	c.A3834G	p.I1278M	ACATATAGAAGCT	.	66.0	14.0	65.0	0.0	.	400	.	.	Atlas-SNP
SLC44A5	204962	hgsc.bcm.edu	hg19	1	75716965	75716965	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	SLC44A5	NM_001130058	exon7	c.T275A	p.L92X	TAAAACAAAATGG	.	78.0	24.0	65.0	0.0	.	231	.	.	Atlas-SNP
CLCA2	9635	hgsc.bcm.edu	hg19	1	86919189	86919189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CLCA2	NM_006536	exon13	c.C2293A	p.P765T	GTGTTTCCACCAT	.	65.0	29.0	40.0	0.0	.	102	.	.	Atlas-SNP
VAV3	10451	hgsc.bcm.edu	hg19	1	108152569	108152569	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	VAV3	NM_006113	exon22	c.T1999A	p.Y667N	AAGAATAATCTAC	.	114.0	43.0	93.0	0.0	.	176	.	.	Atlas-SNP
LRIG2	9860	hgsc.bcm.edu	hg19	1	113657138	113657138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	LRIG2	NM_014813	exon15	c.G2170A	p.A724T	AGTCCTGCCCCTC	.	69.0	21.0	57.0	0.0	.	67	.	.	Atlas-SNP
RPTN	126638	hgsc.bcm.edu	hg19	1	152128332	152128332	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	RPTN	NM_001122965	exon3	c.T1243A	p.Y415N	GACTGTAGTGGGA	.	172.0	88.0	106.0	0.0	.	123	.	.	Atlas-SNP
DARC	2532	hgsc.bcm.edu	hg19	1	159175433	159175433	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	DARC	NM_001122951	exon1	c.C210T	p.T70T	CCTCACCAGTGTC	.	64.0	28.0	70.0	0.0	.	76	.	.	Atlas-SNP
DUSP12	11266	hgsc.bcm.edu	hg19	1	161723027	161723027	+	Silent	SNP	T	T	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	DUSP12	NM_007240	exon5	c.T837G	p.A279A	ATCTGCTTTGTTG	.	94.0	35.0	88.0	0.0	.	20	.	.	Atlas-SNP
RGS4	5999	hgsc.bcm.edu	hg19	1	163043349	163043349	+	Silent	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	RGS4	NM_001102445	exon5	c.T606A	p.S202S	ACCATCTAAACTA	.	259.0	101.0	242.0	0.0	.	97	.	.	Atlas-SNP
ASTN1	460	hgsc.bcm.edu	hg19	1	176838062	176838062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ASTN1	NM_004319	exon22	c.C3565T	p.H1189Y	CCCGGTGTAAGGT	.	204.0	68.0	174.0	0.0	.	314	.	.	Atlas-SNP
TDRD5	163589	hgsc.bcm.edu	hg19	1	179600021	179600021	+	Silent	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	TDRD5	NM_173533	exon7	c.A1092T	p.L364L	CTTACTAGTGTTT	.	286.0	104.0	275.0	0.0	.	149	.	.	Atlas-SNP
KIAA1614	57710	hgsc.bcm.edu	hg19	1	180904396	180904396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	KIAA1614	NM_020950	exon5	c.C1351A	p.R451S	CACGTGCGCTTTG	.	66.0	26.0	39.0	0.0	.	75	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181689967	181689967	+	Silent	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CACNA1E	NM_001205293	exon15	c.T1932A	p.P644P	CTTCCCTGCAGCC	.	46.0	13.0	27.0	0.0	.	778	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181702886	181702886	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CACNA1E	NM_001205293	exon21	c.A3262T	p.I1088F	GTGCACAGTGAGA	.	160.0	61.0	114.0	0.0	.	778	.	.	Atlas-SNP
LAMC2	3918	hgsc.bcm.edu	hg19	1	183207463	183207463	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	LAMC2,colon,carcinoma,0,1	LAMC2	NM_005562	exon19	c.C2776A	p.R926S	CTTTCCCGTGCCA	.	84.0	35.0	37.0	0.0	.	113	.	.	Atlas-SNP
SWT1	54823	hgsc.bcm.edu	hg19	1	185137519	185137519	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	SWT1	NM_017673	exon4	c.A213T	p.Q71H	AAGACAAGGACTG	.	357.0	173.0	274.0	0.0	.	88	.	.	Atlas-SNP
RGS18	64407	hgsc.bcm.edu	hg19	1	192129516	192129516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	RGS18	NM_130782	exon3	c.C230T	p.P77L	TCTCCCCTGAAGA	.	133.0	58.0	115.0	0.0	.	54	.	.	Atlas-SNP
PLXNA2	5362	hgsc.bcm.edu	hg19	1	208252776	208252776	+	Silent	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	PLXNA2,NS,carcinoma,0,1	PLXNA2	NM_025179	exon12	c.A2415T	p.A805A	CTGGGCTGCACAC	.	85.0	33.0	72.0	0.0	.	178	.	.	Atlas-SNP
FAM71A	149647	hgsc.bcm.edu	hg19	1	212798434	212798434	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	FAM71A	NM_153606	exon1	c.G215C	p.G72A	CCATGGGCATTGC	.	105.0	36.0	93.0	0.0	.	87	.	.	Atlas-SNP
EXOC8	149371	hgsc.bcm.edu	hg19	1	231471360	231471360	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	EXOC8	NM_175876	exon1	c.C2132G	p.S711C	AGTCTAGATGCAT	.	203.0	72.0	145.0	0.0	.	42	.	.	Atlas-SNP
RYR2	6262	hgsc.bcm.edu	hg19	1	237804197	237804197	+	Silent	SNP	T	T	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	RYR2	NM_001035	exon47	c.T7116G	p.L2372L	TGAAAGTGACACA	.	35.0	6.0	26.0	0.0	.	1273	.	.	Atlas-SNP
PXDN	7837	hgsc.bcm.edu	hg19	2	1652347	1652347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	PXDN,NS,carcinoma,0,1	PXDN	NM_012293	exon17	c.G3205T	p.A1069S	TGAAGGCCGCGGT	.	41.0	19.0	46.0	0.0	.	255	.	.	Atlas-SNP
PLB1	151056	hgsc.bcm.edu	hg19	2	28752185	28752185	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PLB1	NM_001170585	exon7	c.C327A	p.V109V	TTTAGTCCTTTCA	.	44.0	18.0	44.0	0.0	.	255	.	.	Atlas-SNP
FAM179A	165186	hgsc.bcm.edu	hg19	2	29226440	29226440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	FAM179A	NM_199280	exon6	c.C722T	p.P241L	CCATCCCAAAGGC	.	178.0	14.0	118.0	0.0	.	106	.	.	Atlas-SNP
EML4	27436	hgsc.bcm.edu	hg19	2	42530527	42530527	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	EML4	NM_019063	exon16	c.A1840T	p.R614W	CAGGACAGGCAGG	.	143.0	62.0	125.0	0.0	.	92	.	.	Atlas-SNP
USP34	9736	hgsc.bcm.edu	hg19	2	61520656	61520656	+	Silent	SNP	T	T	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	USP34	NM_014709	exon33	c.A4491G	p.L1497L	TTCTAATAACTGT	.	235.0	50.0	177.0	0.0	.	334	.	.	Atlas-SNP
ARHGAP25	9938	hgsc.bcm.edu	hg19	2	69034418	69034418	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ARHGAP25	NM_001007231	exon5	c.G480A	p.Q160Q	TGGCCAGCGCTTG	.	186.0	72.0	196.0	0.0	.	175	.	.	Atlas-SNP
ZNF638	27332	hgsc.bcm.edu	hg19	2	71650150	71650150	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ZNF638	NM_014497	exon22	c.C3506G	p.T1169S	TTGAAACTCAAGG	.	133.0	45.0	102.0	0.0	.	179	.	.	Atlas-SNP
DNAH6	1768	hgsc.bcm.edu	hg19	2	84880551	84880551	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	DNAH6	NM_001370	exon34	c.G5187C	p.E1729D	GCCTGAGATGTGT	.	95.0	38.0	84.0	0.0	.	194	.	.	Atlas-SNP
GLI2	2736	hgsc.bcm.edu	hg19	2	121728098	121728098	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	GLI2	NM_005270	exon6	c.C975A	p.A325A	CCTGGCCCAGCAG	.	126.0	57.0	98.0	0.0	.	187	.	.	Atlas-SNP
GLI2	2736	hgsc.bcm.edu	hg19	2	121728099	121728099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	GLI2	NM_005270	exon6	c.C976A	p.Q326K	CTGGCCCAGCAGC	.	125.0	57.0	95.0	0.0	.	187	.	.	Atlas-SNP
ACVR2A	92	hgsc.bcm.edu	hg19	2	148653868	148653868	+	Splice_Site	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ACVR2A	NM_001616	exon2	c.56-2A>T	.	TCTTATAGGTGCT	.	72.0	35.0	49.0	0.0	.	125	.	.	Atlas-SNP
ACVR2A	92	hgsc.bcm.edu	hg19	2	148653987	148653987	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ACVR2A	NM_001616	exon2	c.G173C	p.R58P	AACGGCGGCATTG	.	96.0	25.0	73.0	0.0	.	125	.	.	Atlas-SNP
ZNF804A	91752	hgsc.bcm.edu	hg19	2	185800725	185800725	+	Missense_Mutation	SNP	G	G	T	rs371202844	alternate_allele	TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ZNF804A	NM_194250	exon4	c.G602T	p.G201V	AAGTTGGGGATCA	.	128.0	40.0	109.0	0.0	.	322	.	.	Atlas-SNP
ZSWIM2	151112	hgsc.bcm.edu	hg19	2	187697904	187697904	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ZSWIM2	NM_182521	exon7	c.A884T	p.Y295F	TCTATGTATTTTA	.	193.0	65.0	169.0	0.0	.	119	.	.	Atlas-SNP
PLCL1	5334	hgsc.bcm.edu	hg19	2	198948585	198948585	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PLCL1	NM_006226	exon2	c.T344A	p.M115K	GCTTCATGCAAGC	.	90.0	34.0	105.0	0.0	.	358	.	.	Atlas-SNP
CNTN4	152330	hgsc.bcm.edu	hg19	3	3084827	3084827	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CNTN4	NM_175607	exon22	c.A2678T	p.N893I	CAGTCAATGTGAC	.	424.0	108.0	480.0	1.0	.	335	.	.	Atlas-SNP
CACNA2D3	55799	hgsc.bcm.edu	hg19	3	54880437	54880437	+	Nonsense_Mutation	SNP	T	T	A	rs368852689	alternate_allele	TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CACNA2D3	NM_018398	exon17	c.T1569A	p.Y523X	CGGTTATGCCTTT	.	60.0	14.0	50.0	0.0	.	159	.	.	Atlas-SNP
IL17RD	54756	hgsc.bcm.edu	hg19	3	57148802	57148802	+	Silent	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	IL17RD	NM_017563	exon3	c.T228A	p.A76A	GGCGTCAGCAATC	.	65.0	35.0	53.0	0.0	.	93	.	.	Atlas-SNP
PRICKLE2	166336	hgsc.bcm.edu	hg19	3	64084768	64084768	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PRICKLE2	NM_198859	exon8	c.A2494T	p.S832C	TCCTGCTGTGCAA	.	75.0	15.0	86.0	0.0	.	88	.	.	Atlas-SNP
OR5H6	79295	hgsc.bcm.edu	hg19	3	97983418	97983418	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	OR5H6	NM_001005479	exon1	c.T290G	p.M97R	CGAAGATGCTGAT	.	122.0	30.0	137.0	0.0	.	89	.	.	Atlas-SNP
NR1I2	8856	hgsc.bcm.edu	hg19	3	119530549	119530549	+	Silent	SNP	C	C	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	NR1I2	NM_022002	exon4	c.C612G	p.T204T	CACTACCTTCTCC	.	58.0	28.0	50.0	0.0	.	44	.	.	Atlas-SNP
ILDR1	286676	hgsc.bcm.edu	hg19	3	121712452	121712452	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ILDR1	NM_001199799	exon7	c.G1144T	p.D382Y	CCCGGTCCTGGAG	.	111.0	58.0	102.0	0.0	.	120	.	.	Atlas-SNP
CCDC37	348807	hgsc.bcm.edu	hg19	3	126135180	126135180	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CCDC37	NM_182628	exon5	c.A247T	p.M83L	AAGACGATGCGGG	.	76.0	22.0	89.0	0.0	.	69	.	.	Atlas-SNP
STAG1	10274	hgsc.bcm.edu	hg19	3	136196226	136196226	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	STAG1	NM_005862	exon10	c.T931A	p.C311S	CAATACAAATGGC	.	54.0	26.0	43.0	0.0	.	135	.	.	Atlas-SNP
P2RY1	5028	hgsc.bcm.edu	hg19	3	152553693	152553693	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	P2RY1	NM_002563	exon1	c.A122T	p.K41I	CGTTCAAATGCGC	.	112.0	59.0	112.0	0.0	.	49	.	.	Atlas-SNP
MECOM	2122	hgsc.bcm.edu	hg19	3	168840403	168840403	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	MECOM	NM_004991	exon6	c.A943T	p.S315C	TTCCACTGTCATG	.	95.0	45.0	121.0	0.0	.	216	.	.	Atlas-SNP
GPR160	26996	hgsc.bcm.edu	hg19	3	169802417	169802417	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	GPR160	NM_014373	exon4	c.A657C	p.E219D	GAATGAAACTATC	.	70.0	35.0	65.0	0.0	.	26	.	.	Atlas-SNP
KLHL24	54800	hgsc.bcm.edu	hg19	3	183381339	183381339	+	Silent	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	KLHL24	NM_017644	exon4	c.A1014T	p.V338V	TCCTGTAACAGGA	.	70.0	40.0	75.0	0.0	.	56	.	.	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	hg19	3	195511179	195511179	+	Silent	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	MUC4	NM_018406	exon2	c.A7272T	p.S2424S	GGAAGCTGAGGAA	.	370.0	31.0	357.0	0.0	.	1505	.	.	Atlas-SNP
SLIT2	9353	hgsc.bcm.edu	hg19	4	20487848	20487848	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	SLIT2	NM_004787	exon7	c.A565T	p.R189X	ATTACTAGACTTT	.	330.0	251.0	311.0	0.0	.	290	.	.	Atlas-SNP
TMEM156	80008	hgsc.bcm.edu	hg19	4	38995620	38995620	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	TMEM156	NM_024943	exon4	c.359-2A>T	.	AAGAACTAGAAAG	.	111.0	85.0	131.0	0.0	.	31	.	.	Atlas-SNP
GRXCR1	389207	hgsc.bcm.edu	hg19	4	43032535	43032535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	GRXCR1	NM_001080476	exon4	c.G851A	p.R284H	TTCAGCGTTGTAA	.	93.0	17.0	75.0	0.0	.	78	.	.	Atlas-SNP
GK2	2712	hgsc.bcm.edu	hg19	4	80327914	80327914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	GK2	NM_033214	exon1	c.G1441A	p.V481I	TGAGAACTGACAA	.	130.0	27.0	154.0	0.0	.	102	.	.	Atlas-SNP
ADAMTS12	81792	hgsc.bcm.edu	hg19	5	33576426	33576426	+	Silent	SNP	T	T	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ADAMTS12	NM_030955	exon19	c.A3705G	p.R1235R	CTCAACTCTGGGT	.	196.0	98.0	129.0	0.0	.	464	.	.	Atlas-SNP
HCN1	348980	hgsc.bcm.edu	hg19	5	45353293	45353293	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	HCN1	NM_021072	exon5	c.A1286T	p.Q429L	ATCTTCTGACGCA	.	82.0	30.0	50.0	0.0	.	298	.	.	Atlas-SNP
POC5	134359	hgsc.bcm.edu	hg19	5	74981226	74981226	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	POC5	NM_001099271	exon10	c.G1213C	p.A405P	GAGGAGCTGAAGG	.	97.0	32.0	105.0	0.0	.	82	.	.	Atlas-SNP
PPIP5K2	23262	hgsc.bcm.edu	hg19	5	102515845	102515845	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PPIP5K2	NM_015216	exon23	c.A2878T	p.R960W	ATACACAGGAAGT	.	113.0	26.0	73.0	0.0	.	98	.	.	Atlas-SNP
DMXL1	1657	hgsc.bcm.edu	hg19	5	118407346	118407346	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	DMXL1	NM_005509	exon1	c.T82G	p.F28V	CAGCGCTTCACGG	.	94.0	18.0	62.0	0.0	.	268	.	.	Atlas-SNP
TGFBI	7045	hgsc.bcm.edu	hg19	5	135388630	135388630	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	TGFBI	NM_000358	exon8	c.G948C	p.M316I	AGCTATGTGTGCT	.	148.0	48.0	100.0	0.0	.	76	.	.	Atlas-SNP
ANKHD1	54882	hgsc.bcm.edu	hg19	5	139838859	139838859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ANKHD1	NM_024668	exon9	c.A1591G	p.I531V	GCTGATATAGAAC	.	138.0	42.0	100.0	0.0	.	233	.	.	Atlas-SNP
AFAP1L1	134265	hgsc.bcm.edu	hg19	5	148682070	148682070	+	Silent	SNP	T	T	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	AFAP1L1	NM_001146337	exon5	c.T417C	p.P139P	GTCGCCTGAGTAC	.	59.0	17.0	51.0	0.0	.	86	.	.	Atlas-SNP
FAT2	2196	hgsc.bcm.edu	hg19	5	150946663	150946663	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	FAT2	NM_001447	exon1	c.T1830A	p.F610L	TAGATCAAAATAC	.	126.0	42.0	88.0	0.0	.	465	.	.	Atlas-SNP
CYFIP2	26999	hgsc.bcm.edu	hg19	5	156816275	156816275	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CYFIP2	NM_001037332	exon29	c.C3286T	p.L1096L	GTCATCCTGACCC	.	96.0	57.0	61.0	0.0	.	354	.	.	Atlas-SNP
KIF13A	63971	hgsc.bcm.edu	hg19	6	17794911	17794911	+	Silent	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	KIF13A	NM_001105567	exon24	c.A2967T	p.I989I	CATTTCTATTCTT	.	83.0	31.0	43.0	0.0	.	276	.	.	Atlas-SNP
ITPR3	3710	hgsc.bcm.edu	hg19	6	33643557	33643557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ITPR3	NM_002224	exon25	c.C3206T	p.P1069L	ATGCGCCGCTGGT	.	111.0	34.0	93.0	0.0	.	409	.	.	Atlas-SNP
KLHDC3	116138	hgsc.bcm.edu	hg19	6	42986094	42986094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	KLHDC3	NM_057161	exon6	c.G533A	p.R178H	CTGCACGCTGGAG	.	60.0	32.0	47.0	0.0	.	23	.	.	Atlas-SNP
GRM1	2911	hgsc.bcm.edu	hg19	6	146720714	146720714	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	GRM1	NM_000838	exon8	c.C2539G	p.R847G	AATGTCCGCAGTG	.	49.0	37.0	94.0	0.0	.	419	.	.	Atlas-SNP
ZNF479	90827	hgsc.bcm.edu	hg19	7	57194367	57194367	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ZNF479	NM_033273	exon3	c.T98A	p.L33Q	CAATCCAGGCATT	.	467.0	122.0	326.0	0.0	.	193	.	.	Atlas-SNP
RABGEF1	27342	hgsc.bcm.edu	hg19	7	66270375	66270375	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	RABGEF1	NM_014504	exon8	c.A1069T	p.T357S	TATTTCACCAATC	.	82.0	20.0	50.0	0.0	.	56	.	.	Atlas-SNP
WBSCR17	64409	hgsc.bcm.edu	hg19	7	71142287	71142287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	WBSCR17	NM_022479	exon9	c.C1496A	p.P499Q	GGGGACCACAGGT	.	103.0	56.0	64.0	0.0	.	208	.	.	Atlas-SNP
COL1A2	1278	hgsc.bcm.edu	hg19	7	94029552	94029552	+	Silent	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	COL1A2	NM_000089	exon5	c.A177T	p.T59T	TCCCACAGGCCCT	.	123.0	67.0	81.0	0.0	.	240	.	.	Atlas-SNP
LRRC61	65999	hgsc.bcm.edu	hg19	7	150034126	150034126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	LRRC61	NM_023942	exon2	c.A176G	p.D59G	GGCTGGACCTATC	.	38.0	17.0	26.0	0.0	.	17	.	.	Atlas-SNP
KCNB2	9312	hgsc.bcm.edu	hg19	8	73480433	73480433	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	KCNB2,acral,malignant_melanoma,+1,1	KCNB2	NM_004770	exon2	c.A464T	p.E155V	GGCGAGAGGCAGA	.	103.0	39.0	72.0	0.0	.	228	.	.	Atlas-SNP
TRMT12	55039	hgsc.bcm.edu	hg19	8	125464081	125464081	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	TRMT12	NM_017956	exon1	c.A913T	p.R305W	GCAGATAGGGTGA	.	60.0	24.0	45.0	0.0	.	28	.	.	Atlas-SNP
ASPN	54829	hgsc.bcm.edu	hg19	9	95232978	95232978	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ASPN	NM_001193335	exon3	c.T360A	p.N120K	AAAATCATTTTCT	.	72.0	42.0	93.0	0.0	.	52	.	.	Atlas-SNP
WNK2	65268	hgsc.bcm.edu	hg19	9	96079849	96079849	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	WNK2	NM_006648	exon28	c.G6564A	p.A2188A	CCCAGCGCCCGGC	.	24.0	15.0	45.0	0.0	.	277	.	.	Atlas-SNP
COL15A1	1306	hgsc.bcm.edu	hg19	9	101777823	101777823	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	COL15A1	NM_001855	exon10	c.T1478C	p.M493T	CCACCATGGCCCC	.	30.0	25.0	46.0	0.0	.	211	.	.	Atlas-SNP
USP20	10868	hgsc.bcm.edu	hg19	9	132636872	132636872	+	Silent	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	USP20	NM_001008563	exon18	c.A1758T	p.L586L	TCACCTAAAGCGC	.	62.0	44.0	93.0	0.0	.	186	.	.	Atlas-SNP
KIAA1217	56243	hgsc.bcm.edu	hg19	10	24813464	24813464	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	KIAA1217	NM_019590	exon13	c.C2669G	p.S890C	AGAGCTCCCCTGT	.	46.0	21.0	47.0	0.0	.	235	.	.	Atlas-SNP
FAM21C	253725	hgsc.bcm.edu	hg19	10	46272808	46272808	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	FAM21C	NM_015262	exon22	c.A2230T	p.K744X	GTGGATAAGAAGG	.	389.0	157.0	384.0	0.0	.	68	.	.	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	hg19	10	55912909	55912909	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PCDH15	NM_001142763	exon15	c.T1750A	p.Y584N	GTGCGTAAGTCCG	.	88.0	18.0	88.0	0.0	.	1715	.	.	Atlas-SNP
RHOBTB1	9886	hgsc.bcm.edu	hg19	10	62647978	62647978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	RHOBTB1	NM_014836	exon6	c.C1448T	p.T483M	GAGAACGTTCCCT	.	70.0	35.0	77.0	0.0	.	61	.	.	Atlas-SNP
DDX21	9188	hgsc.bcm.edu	hg19	10	70730090	70730090	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	DDX21	NM_004728	exon8	c.A1370T	p.N457I	CCCAGAATTCAGC	.	91.0	14.0	73.0	0.0	.	57	.	.	Atlas-SNP
TDRD1	56165	hgsc.bcm.edu	hg19	10	115959029	115959029	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	TDRD1	NM_198795	exon4	c.T482C	p.L161S	CCTCCTTAGGACC	.	161.0	86.0	150.0	0.0	.	126	.	.	Atlas-SNP
VWA2	340706	hgsc.bcm.edu	hg19	10	116048949	116048949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	VWA2	NM_001272046	exon12	c.G1823T	p.G608V	GGGTGGGCTCAGC	.	30.0	15.0	45.0	0.0	.	64	.	.	Atlas-SNP
OR56B1	387748	hgsc.bcm.edu	hg19	11	5758461	5758461	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	OR56B1	NM_001005180	exon1	c.T715A	p.S239T	CTGAACTCAGCTG	.	53.0	24.0	56.0	0.0	.	38	.	.	Atlas-SNP
MICAL2	9645	hgsc.bcm.edu	hg19	11	12265545	12265545	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	MICAL2	NM_014632	exon21	c.C2670T	p.L890L	ACTACTCTCTAAA	.	133.0	10.0	112.0	0.0	.	114	.	.	Atlas-SNP
SAA2-SAA4	100528017	hgsc.bcm.edu	hg19	11	18253952	18253952	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	.	NM_001199744	exon5	c.A454G	p.K152E	TGAGTTTAGCAGC	.	120.0	37.0	113.0	0.0	.	.	.	.	Atlas-SNP
MRGPRX2	117194	hgsc.bcm.edu	hg19	11	19077115	19077115	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	MRGPRX2	NM_054030	exon2	c.T835A	p.Y279N	AGAAGTAAATGAT	.	81.0	28.0	77.0	0.0	.	42	.	.	Atlas-SNP
OR4X1	390113	hgsc.bcm.edu	hg19	11	48285788	48285788	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	OR4X1	NM_001004726	exon1	c.A376T	p.K126X	ATCTGCAAGCCCT	.	94.0	33.0	70.0	0.0	.	75	.	.	Atlas-SNP
OR4C11	219429	hgsc.bcm.edu	hg19	11	55371245	55371245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	OR4C11	NM_001004700	exon1	c.G605A	p.G202E	ATTGCCCCACTGT	.	161.0	25.0	115.0	0.0	.	73	.	.	Atlas-SNP
OR4C6	219432	hgsc.bcm.edu	hg19	11	55433436	55433436	+	Missense_Mutation	SNP	T	T	C	rs367617569		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	OR4C6	NM_001004704	exon1	c.T794C	p.I265T	ACCCCATAGACAA	.	74.0	27.0	76.0	0.0	.	114	.	.	Atlas-SNP
OR5AS1	219447	hgsc.bcm.edu	hg19	11	55798176	55798176	+	Silent	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	OR5AS1	NM_001001921	exon1	c.T282A	p.P94P	CTCTCCTTATGGG	.	75.0	35.0	46.0	0.0	.	121	.	.	Atlas-SNP
OR8J3	81168	hgsc.bcm.edu	hg19	11	55905001	55905001	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	OR8J3	NM_001004064	exon1	c.A194T	p.H65L	GCTAGATGTCTCA	.	133.0	57.0	94.0	0.0	.	112	.	.	Atlas-SNP
OR5M10	390167	hgsc.bcm.edu	hg19	11	56344760	56344760	+	Silent	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	OR5M10	NM_001004741	exon1	c.T438A	p.T146T	AGGCACAGTGACC	.	157.0	60.0	117.0	0.0	.	56	.	.	Atlas-SNP
PRG3	10394	hgsc.bcm.edu	hg19	11	57147137	57147137	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PRG3	NM_006093	exon3	c.T205A	p.C69S	CTTGACAGGCAGA	.	114.0	33.0	81.0	0.0	.	35	.	.	Atlas-SNP
PCNXL3	399909	hgsc.bcm.edu	hg19	11	65391690	65391690	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PCNXL3	NM_032223	exon14	c.A2569T	p.S857C	GCGTACAGCCGTC	.	42.0	14.0	26.0	0.0	.	140	.	.	Atlas-SNP
GRIA4	2893	hgsc.bcm.edu	hg19	11	105769114	105769114	+	Silent	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	GRIA4	NM_001077244	exon7	c.A846T	p.L282L	GAAACTAGATCAG	.	173.0	72.0	151.0	0.0	.	380	.	.	Atlas-SNP
SCN3B	55800	hgsc.bcm.edu	hg19	11	123524465	123524465	+	Silent	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	SCN3B	NM_018400	exon1	c.T45A	p.L15L	GTAGATAAGCACG	.	70.0	36.0	77.0	0.0	.	53	.	.	Atlas-SNP
PDE3A	5139	hgsc.bcm.edu	hg19	12	20523005	20523005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PDE3A	NM_000921	exon1	c.G787T	p.A263S	CAGTCCGCGGAGG	.	37.0	22.0	29.0	0.0	.	184	.	.	Atlas-SNP
NR4A1	3164	hgsc.bcm.edu	hg19	12	52452600	52452600	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	NR4A1	NM_001202233	exon8	c.G1708C	p.G570R	CTGTTGGGCAAAC	.	41.0	23.0	44.0	0.0	.	77	.	.	Atlas-SNP
LGR5	8549	hgsc.bcm.edu	hg19	12	71977559	71977559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	LGR5	NM_003667	exon18	c.C1769A	p.S590Y	ACATTTCCCCCAT	.	161.0	67.0	148.0	0.0	.	103	.	.	Atlas-SNP
LGR5	8549	hgsc.bcm.edu	hg19	12	71977560	71977560	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	LGR5	NM_003667	exon18	c.C1770A	p.S590S	CATTTCCCCCATT	.	160.0	66.0	146.0	0.0	.	103	.	.	Atlas-SNP
LRRIQ1	84125	hgsc.bcm.edu	hg19	12	85554467	85554467	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	LRRIQ1	NM_001079910	exon24	c.G4797T	p.Q1599H	GGTACAGCCCAGA	.	105.0	44.0	68.0	0.0	.	512	.	.	Atlas-SNP
AMDHD1	144193	hgsc.bcm.edu	hg19	12	96360279	96360279	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	AMDHD1	NM_152435	exon8	c.T1186G	p.S396A	ATCAATTCATCCC	.	75.0	18.0	37.0	0.0	.	56	.	.	Atlas-SNP
RASAL1	8437	hgsc.bcm.edu	hg19	12	113553065	113553065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	RASAL1	NM_004658	exon12	c.C1008A	p.D336E	GTTGGGGTCCACT	.	153.0	40.0	93.0	0.0	.	89	.	.	Atlas-SNP
SETD1B	23067	hgsc.bcm.edu	hg19	12	122261330	122261330	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	SETD1B	NM_015048	exon12	c.C4716T	p.S1572S	GCCCTCCGAGGCC	.	49.0	19.0	31.0	0.0	.	105	.	.	Atlas-SNP
VPS33A	65082	hgsc.bcm.edu	hg19	12	122717409	122717409	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	VPS33A	NM_022916	exon12	c.G1547T	p.R516L	AGGATGCGGAGGA	.	118.0	41.0	83.0	0.0	.	61	.	.	Atlas-SNP
SACS	26278	hgsc.bcm.edu	hg19	13	23910455	23910455	+	Silent	SNP	T	T	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	SACS	NM_014363	exon10	c.A7560C	p.T2520T	AAATTCTGTGCCA	.	77.0	26.0	98.0	0.0	.	871	.	.	Atlas-SNP
PARP4	143	hgsc.bcm.edu	hg19	13	25043232	25043232	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PARP4	NM_006437	exon17	c.A2063T	p.E688V	TGGGCTTCTTCCT	.	44.0	9.0	53.0	0.0	.	142	.	.	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	hg19	13	39454462	39454462	+	Silent	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	FREM2	NM_207361	exon24	c.A9048T	p.T3016T	CTATACAGTGAGA	.	46.0	18.0	85.0	0.0	.	385	.	.	Atlas-SNP
TTC5	91875	hgsc.bcm.edu	hg19	14	20760207	20760207	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	TTC5	NM_138376	exon9	c.A1138C	p.I380L	CTCCAATGAGCAC	.	66.0	29.0	52.0	0.0	.	34	.	.	Atlas-SNP
ADAM20	8748	hgsc.bcm.edu	hg19	14	70990228	70990228	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ADAM20	NM_003814	exon2	c.A1397T	p.E466V	CCTTCTTCAACCA	.	130.0	47.0	127.0	0.0	.	59	.	.	Atlas-SNP
CLMN	79789	hgsc.bcm.edu	hg19	14	95677202	95677202	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CLMN	NM_024734	exon7	c.T623A	p.V208E	TCCTGCACCGCCA	.	85.0	37.0	68.0	0.0	.	103	.	.	Atlas-SNP
AK7	122481	hgsc.bcm.edu	hg19	14	96875253	96875253	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	AK7	NM_152327	exon4	c.G473A	p.W158X	TGACTTGGGCGCG	.	147.0	53.0	105.0	0.0	.	69	.	.	Atlas-SNP
ZFP106	64397	hgsc.bcm.edu	hg19	15	42729475	42729475	+	Silent	SNP	T	T	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ZFP106	NM_022473	exon10	c.A4632G	p.L1544L	GGTATATAGCAAG	.	91.0	23.0	81.0	0.0	.	117	.	.	Atlas-SNP
SEMA6D	80031	hgsc.bcm.edu	hg19	15	48058329	48058329	+	Nonsense_Mutation	SNP	T	T	A	rs113249348	bycluster;alternate_allele	TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	SEMA6D	NM_153617	exon15	c.T1596A	p.Y532X	CCCGTATTGTGGC	.	125.0	13.0	98.0	0.0	.	322	.	T|0.500;C|0.500	Atlas-SNP
SLC12A1	6557	hgsc.bcm.edu	hg19	15	48513119	48513119	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	SLC12A1	NM_001184832	exon4	c.T554A	p.V185E	CACAGGTAAGATG	.	135.0	58.0	104.0	0.0	.	243	.	.	Atlas-SNP
IGDCC3	9543	hgsc.bcm.edu	hg19	15	65621468	65621468	+	Missense_Mutation	SNP	C	C	T	rs149849455		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	IGDCC3	NM_004884	exon14	c.G2224A	p.A742T	ACGGAGCGGGGGC	.	67.0	37.0	62.0	0.0	.	82	.	C|1.000;T|0.000	Atlas-SNP
EDC3	80153	hgsc.bcm.edu	hg19	15	74925259	74925259	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	EDC3	NM_001142444	exon8	c.C1221T	p.V407V	GTTGATGACCAGG	.	85.0	23.0	67.0	0.0	.	32	.	.	Atlas-SNP
ACAN	176	hgsc.bcm.edu	hg19	15	89402447	89402447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ACAN	NM_001135	exon12	c.G6631A	p.V2211I	CTGGGCGTTGTCA	.	130.0	53.0	111.0	0.0	.	220	.	.	Atlas-SNP
FURIN	5045	hgsc.bcm.edu	hg19	15	91424605	91424605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	FURIN	NM_002569	exon16	c.A1882G	p.S628G	CACTATAGCACCG	.	73.0	16.0	68.0	0.0	.	85	.	.	Atlas-SNP
SEPT12	124404	hgsc.bcm.edu	hg19	16	4827877	4827877	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	SEPT12	NM_144605	exon10	c.C998G	p.A333G	GGGGAGGCCGGGG	.	112.0	56.0	127.0	0.0	.	40	.	.	Atlas-SNP
MKL2	57496	hgsc.bcm.edu	hg19	16	14304134	14304134	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	MKL2	NM_014048	exon4	c.A189G	p.R63R	GACGAGAGAACAA	.	86.0	39.0	91.0	0.0	.	103	.	.	Atlas-SNP
DNAH3	55567	hgsc.bcm.edu	hg19	16	21071601	21071601	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	DNAH3	NM_017539	exon26	c.T3797A	p.I1266N	GCTTCAATCCCAA	.	64.0	11.0	127.0	0.0	.	1142	.	.	Atlas-SNP
HS3ST4	9951	hgsc.bcm.edu	hg19	16	26147301	26147301	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	HS3ST4	NM_006040	exon2	c.T1103A	p.M368K	GGGAAATGGCCAA	.	135.0	70.0	121.0	0.0	.	120	.	.	Atlas-SNP
MT1E	4493	hgsc.bcm.edu	hg19	16	56660821	56660821	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	MT1E	NM_175617	exon3	c.G124T	p.A42S	GGCTGTGCCAAGT	.	39.0	23.0	43.0	0.0	.	7	.	.	Atlas-SNP
KCNG4	93107	hgsc.bcm.edu	hg19	16	84270675	84270675	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	KCNG4,rectum,carcinoma,0,2	KCNG4	NM_172347	exon2	c.C417T	p.C139C	CAGCGCGCACATC	.	68.0	33.0	64.0	1.0	.	71	.	.	Atlas-SNP
KIAA0513	9764	hgsc.bcm.edu	hg19	16	85114999	85114999	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	KIAA0513	NM_014732	exon9	c.980+1G>A	.	TACCAGGTAGGAG	.	73.0	30.0	64.0	0.0	.	43	.	.	Atlas-SNP
ALKBH5	54890	hgsc.bcm.edu	hg19	17	18088100	18088100	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ALKBH5	NM_017758	exon1	c.C543T	p.V181V	CCGCGTCATCCCC	.	81.0	37.0	47.0	0.0	.	24	.	.	Atlas-SNP
TMEM132E	124842	hgsc.bcm.edu	hg19	17	32964875	32964875	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	TMEM132E	NM_207313	exon10	c.T2579A	p.L860Q	GAGAGCTGTCGCC	.	33.0	18.0	28.0	0.0	.	122	.	.	Atlas-SNP
KRT27	342574	hgsc.bcm.edu	hg19	17	38937443	38937443	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	KRT27	NM_181537	exon2	c.T524A	p.L175Q	TACTTTAGTCTGA	.	100.0	29.0	92.0	0.0	.	41	.	.	Atlas-SNP
KCNJ16	3773	hgsc.bcm.edu	hg19	17	68128987	68128987	+	Silent	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	KCNJ16	NM_001270422	exon6	c.T759A	p.I253I	AACTATTGTCCAT	.	83.0	41.0	62.0	0.0	.	72	.	.	Atlas-SNP
LAMA1	284217	hgsc.bcm.edu	hg19	18	6978215	6978215	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	LAMA1	NM_005559	exon43	c.T6170A	p.L2057Q	TCCTGCAGAAGCT	.	64.0	30.0	75.0	0.0	.	458	.	.	Atlas-SNP
DYNAP	284254	hgsc.bcm.edu	hg19	18	52262216	52262216	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	.	NM_173629	exon2	c.G182A	p.W61X	TATGCTGGTGTCT	.	92.0	52.0	92.0	0.0	.	.	.	.	Atlas-SNP
MATK	4145	hgsc.bcm.edu	hg19	19	3784140	3784140	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	MATK	NM_002378	exon5	c.C347T	p.P116L	AGCTTGGGGTCTG	.	41.0	21.0	35.0	0.0	.	108	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9062327	9062327	+	Silent	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	MUC16	NM_024690	exon3	c.A25119T	p.S8373S	TGTCTCTGAGTCA	.	66.0	25.0	68.0	0.0	.	4315	.	.	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9082590	9082590	+	Silent	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	MUC16	NM_024690	exon1	c.T9225A	p.A3075A	TGTCAGAGCTGAA	.	155.0	66.0	103.0	0.0	.	4315	.	.	Atlas-SNP
ZNF486	90649	hgsc.bcm.edu	hg19	19	20307961	20307961	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ZNF486	NM_052852	exon4	c.A442T	p.T148S	TTGACAACTACCC	.	249.0	94.0	174.0	0.0	.	74	.	.	Atlas-SNP
ZNF568	374900	hgsc.bcm.edu	hg19	19	37440867	37440867	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ZNF568	NM_198539	exon7	c.T812A	p.I271N	AGAAAATTCATAC	.	112.0	49.0	80.0	0.0	.	106	.	.	Atlas-SNP
PLD3	23646	hgsc.bcm.edu	hg19	19	40877640	40877640	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PLD3	NM_012268	exon9	c.A739T	p.I247F	ACCAAGATCTTTG	.	86.0	31.0	74.0	0.0	.	71	.	.	Atlas-SNP
LIG1	3978	hgsc.bcm.edu	hg19	19	48643272	48643272	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	LIG1	NM_000234	exon12	c.G1043T	p.G348V	CCCACGCCAAGCT	.	85.0	27.0	54.0	0.0	.	151	.	.	Atlas-SNP
LIG1	3978	hgsc.bcm.edu	hg19	19	48643273	48643273	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	LIG1	NM_000234	exon12	c.G1042T	p.G348C	CCACGCCAAGCTC	.	85.0	26.0	54.0	0.0	.	151	.	.	Atlas-SNP
KIR2DL3	3804	hgsc.bcm.edu	hg19	19	55263853	55263853	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	KIR2DL3	NM_015868	exon8	c.A908T	p.Y303F	TGACATATGCACA	.	130.0	66.0	113.0	0.0	.	68	.	.	Atlas-SNP
NLRP5	126206	hgsc.bcm.edu	hg19	19	56538847	56538847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	NLRP5	NM_153447	exon7	c.G1248T	p.K416N	AGAGAAGCTCAAG	.	90.0	20.0	58.0	0.0	.	217	.	.	Atlas-SNP
ZNF667	63934	hgsc.bcm.edu	hg19	19	56953879	56953879	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ZNF667	NM_022103	exon5	c.A485T	p.H162L	TTCTGATGAAGTT	.	139.0	60.0	109.0	0.0	.	95	.	.	Atlas-SNP
CHGB	1114	hgsc.bcm.edu	hg19	20	5904188	5904188	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CHGB	NM_001819	exon4	c.G1398A	p.E466E	GAAAGAGCTGGAC	.	92.0	40.0	55.0	0.0	.	112	.	.	Atlas-SNP
PLCB1	23236	hgsc.bcm.edu	hg19	20	8713899	8713899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PLCB1	NM_015192	exon19	c.C1903G	p.P635A	ATGCAAATAAATA	.	110.0	56.0	90.0	0.0	.	394	.	.	Atlas-SNP
CRNKL1	51340	hgsc.bcm.edu	hg19	20	20033133	20033133	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CRNKL1	NM_016652	exon2	c.A337T	p.R113X	GACCTCTCGCTTG	.	100.0	34.0	81.0	0.0	.	101	.	.	Atlas-SNP
RALGAPA2	57186	hgsc.bcm.edu	hg19	20	20563863	20563863	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	RALGAPA2	NM_020343	exon20	c.T2538A	p.S846R	GTTGGTACTTTCA	.	88.0	41.0	77.0	0.0	.	274	.	.	Atlas-SNP
SRSF6	6431	hgsc.bcm.edu	hg19	20	42089474	42089474	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	SRSF6_ENST00000244020,NS,carcinoma,0,1	SRSF6	NM_006275	exon6	c.A806G	p.Y269C	ATGAGTATGAGAA	.	136.0	20.0	111.0	0.0	.	37	.	.	Atlas-SNP
ZNF334	55713	hgsc.bcm.edu	hg19	20	45130663	45130663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	ZNF334,NS,carcinoma,0,1	ZNF334	NM_018102	exon5	c.G1315A	p.G439R	ATTTTCCACATTG	.	87.0	28.0	55.0	0.0	.	101	.	.	Atlas-SNP
IGSF5	150084	hgsc.bcm.edu	hg19	21	41151111	41151111	+	Silent	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	IGSF5	NM_001080444	exon5	c.A813T	p.L271L	TGGACTAGCAGGC	.	81.0	34.0	49.0	0.0	.	62	.	.	Atlas-SNP
CHEK2	11200	hgsc.bcm.edu	hg19	22	29130468	29130468	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CHEK2	NM_145862	exon2	c.A242C	p.E81A	TGGTCCTCAGGTT	.	72.0	15.0	96.0	0.0	.	438	.	.	Atlas-SNP
MCM5	4174	hgsc.bcm.edu	hg19	22	35812706	35812706	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	MCM5	NM_006739	exon12	c.G1489C	p.E497Q	TGGGATGAGACGA	.	63.0	25.0	69.0	0.0	.	54	.	.	Atlas-SNP
C22orf46	79640	hgsc.bcm.edu	hg19	22	42086739	42086739	+	Silent	SNP	T	T	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	C22orf46	NM_001142964	exon1	c.T108G	p.P36P	GGACCCTCAGTGC	.	48.0	12.0	52.0	0.0	.	4	.	.	Atlas-SNP
PHEX	5251	hgsc.bcm.edu	hg19	X	22056646	22056646	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PHEX	NM_000444	exon2	c.A178C	p.I60L	GAATGCATCGAAG	.	38.0	28.0	39.0	0.0	.	95	.	.	Atlas-SNP
KLHL15	80311	hgsc.bcm.edu	hg19	X	24006693	24006693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	KLHL15	NM_030624	exon4	c.G1160T	p.R387I	CTGGTTCTGCCTG	.	102.0	91.0	97.0	0.0	.	50	.	.	Atlas-SNP
DCAF8L1	139425	hgsc.bcm.edu	hg19	X	27999289	27999289	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	DCAF8L1	NM_001017930	exon1	c.A163T	p.R55W	CATCCCTGGTATC	.	108.0	91.0	93.0	0.0	.	121	.	.	Atlas-SNP
CCNB3	85417	hgsc.bcm.edu	hg19	X	50053768	50053768	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CCNB3	NM_033031	exon5	c.A2599T	p.S867C	AAGCCCAGCATTG	.	111.0	94.0	84.0	0.0	.	367	.	.	Atlas-SNP
GABRA3	2556	hgsc.bcm.edu	hg19	X	151336877	151336877	+	Silent	SNP	G	G	C	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	GABRA3	NM_000808	exon10	c.C1302G	p.P434P	GGCCTTGGGTGAA	.	273.0	71.0	127.0	0.0	.	97	.	.	Atlas-SNP
MECP2	4204	hgsc.bcm.edu	hg19	X	153295883	153295883	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	MECP2	NM_001110792	exon3	c.A1432T	p.M478L	TTGGCATGGAGGA	.	116.0	52.0	48.0	0.0	.	41	.	.	Atlas-SNP
DNASE1L1	1774	hgsc.bcm.edu	hg19	X	153637534	153637534	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	DNASE1L1	.	.	.	.	TAGGGCTAGGAGG	.	73.0	30.0	28.0	0.0	.	20	.	.	Atlas-SNP
CNNM1	26507	hgsc.bcm.edu	hg19	10	101124744	101124744	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	CNNM1	NM_020348	exon6	c.2160delT	p.A720fs	.	.	50.0	35.0	56.0	0.0	.	101	.	.	Atlas-Indel,Pindel
TTC28	23331	hgsc.bcm.edu	hg19	22	28426324	28426325	+	In_Frame_Ins	INS	-	-	TCA	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	TTC28	NM_001145418	exon13	c.3963_3964insTGA	p.E1321delinsDE	.	.	99.0	24.0	112.0	0.0	.	84	.	.	Atlas-Indel,Pindel
SLC10A1	6554	hgsc.bcm.edu	hg19	14	70245100	70245110	+	Frame_Shift_Del	DEL	AGCCCTTCTCC	AGCCCTTCTCC	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	AGCCCTTCTCC	AGCCCTTCTCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	SLC10A1	NM_003049	exon4	c.884_894del	p.295_298del	.	.	100.0	26.0	94.0	0.0	.	32	.	.	Atlas-Indel,Pindel
TMEM184A	202915	hgsc.bcm.edu	hg19	7	1586662	1586663	+	In_Frame_Ins	INS	-	-	GCC	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.,1	TMEM184A	NM_001097620	exon9	c.1168_1169insGGC	p.S390delinsGS	.	.	18.0	11.0	10.0	0.0	.	35	.	.	Atlas-INDEL
BTBD8	284697	hgsc.bcm.edu	hg19	1	92554445	92554445	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	BTBD8	NM_183242	exon2	c.339delG	p.T113fs	.	.	90.0	49.0	107.0	0.0	.	32	.	.	Atlas-Indel,Pindel
RYR3	6263	hgsc.bcm.edu	hg19	15	34109120	34109120	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	RYR3	NM_001036	exon75	c.10559delA	p.E3520fs	.	.	110.0	42.0	94.0	0.0	.	760	.	.	Atlas-Indel,Pindel
PDE1C	5137	hgsc.bcm.edu	hg19	7	31855598	31855599	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PDE1C	NM_001191058	exon16	c.1933_1934del	p.645_645del	.	.	161.0	48.0	112.0	0.0	.	465	.	.	Atlas-Indel,Pindel
NFRKB	4798	hgsc.bcm.edu	hg19	11	129751620	129751644	+	Frame_Shift_Del	DEL	AAAAAAGAGCATCTTACCTCGACTT	AAAAAAGAGCATCTTACCTCGACTT	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	AAAAAAGAGCATCTTACCTCGACTT	AAAAAAGAGCATCTTACCTCGACTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	NFRKB	NM_006165	exon10	c.1387_1393del	p.463_465del	.	.	76.0	11.0	80.0	0.0	.	101	.	.	Atlas-Indel,Pindel
ACVR2A	92	hgsc.bcm.edu	hg19	2	148653984	148653984	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	ACVR2A,colon,carcinoma,0,1	ACVR2A	NM_001616	exon2	c.169delC	p.R57fs	.	.	95.0	23.0	74.0	0.0	.	125	.	.	Atlas-INDEL
JARID2	3720	hgsc.bcm.edu	hg19	6	15496721	15496722	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.,1	JARID2	NM_004973	exon7	c.1265_1266insG	p.V422fs	.	.	75.0	11.0	58.0	0.0	.	135	.	.	Atlas-INDEL
FCRL2	79368	hgsc.bcm.edu	hg19	1	157740434	157740434	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	FCRL2	NM_030764	exon3	c.76delT	p.S26fs	.	.	59.0	27.0	49.0	0.0	.	104	.	.	Atlas-Indel,Pindel
OR2F2	135948	hgsc.bcm.edu	hg19	7	143633139	143633139	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	OR2F2	NM_001004685	exon1	c.813delG	p.E271fs	.	.	150.0	87.0	91.0	0.0	.	63	.	.	Atlas-Indel,Pindel
FTCD	10841	hgsc.bcm.edu	hg19	21	47566181	47566181	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	FTCD	NM_206965	exon8	c.968delA	p.E323fs	.	.	113.0	51.0	100.0	0.0	.	59	.	.	Atlas-Indel,Pindel
WT1-AS	51352	hgsc.bcm.edu	hg19	11	32461618	32461619	+	RNA	INS	-	-	AAAAAAAA	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	WT1-AS	.	.	.	.	.	.	121.0	10.0	96.0	0.0	.	7	.	.	Atlas-INDEL
C19orf48	84798	hgsc.bcm.edu	hg19	19	51301354	51301354	+	In_Frame_Del	DEL	A	A	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	C19orf48	NM_199249	exon5	c.353delG	p.X118X	.	.	52.0	27.0	33.0	0.0	.	11	.	.	Atlas-Indel,Pindel
SAMD11	148398	hgsc.bcm.edu	hg19	1	878348	878348	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	SAMD11	NM_152486	exon11	c.1473delT	p.A491fs	.	.	61.0	27.0	93.0	0.0	.	34	.	.	Atlas-Indel,Pindel
HLA-DPB1	3115	hgsc.bcm.edu	hg19	6	33053994	33054040	+	In_Frame_Del	DEL	TTATATAACCTTTCGTCTTTCATTTCAGTTCAACGAGGATCTGCATA	TTATATAACCTTTCGTCTTTCATTTCAGTTCAACGAGGATCTGCATA	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	TTATATAACCTTTCGTCTTTCATTTCAGTTCAACGAGGATCTGCATA	TTATATAACCTTTCGTCTTTCATTTCAGTTCAACGAGGATCTGCATA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	HLA-DPB1	NM_002121	exon5	c.758_775del	p.253_259del	.	.	76.0	10.0	59.0	0.0	.	28	.	.	Pindel
PHKA1	5255	hgsc.bcm.edu	hg19	X	71804110	71804110	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	PHKA1	NM_002637	exon30	c.3287delC	p.T1096fs	.	.	313.0	115.0	267.0	0.0	.	129	.	.	Pindel
ACVR2A	92	hgsc.bcm.edu	hg19	2	148653985	148653987	+	In_Frame_Del	DEL	GCG	GCG	-	novel		TCGA-G3-A7M5-01A-11D-A33Q-10	TCGA-G3-A7M5-10A-01D-A33Q-10	GCG	GCG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	fce4d27a-466f-4333-8ea0-4342edd2f3e7	39e7b768-f7c4-48c0-9ba7-66a6ed5464ff	.	ACVR2A	NM_001616	exon2	c.170_172del	p.57_58del	.	.	96.0	15.0	73.0	0.0	.	125	.	.	Pindel