Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
RHBDL2	54933	hgsc.bcm.edu	hg19	1	39352191	39352191	+	Silent	SNP	T	T	C	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	RHBDL2	NM_017821	exon8	c.A897G	p.L299L	TGGAGATAGGAAA	.	66.0	38.0	76.0	0.0	.	28	.	.	Atlas-SNP
NASP	4678	hgsc.bcm.edu	hg19	1	46080777	46080777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	NASP	NM_002482	exon10	c.C1759T	p.H587Y	GAGACCCACTACC	.	159.0	74.0	138.0	0.0	.	77	.	.	Atlas-SNP
CCDC18	343099	hgsc.bcm.edu	hg19	1	93649646	93649646	+	Silent	SNP	A	A	G	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	CCDC18	NM_206886	exon3	c.A246G	p.E82E	TTATGAAAACGTC	.	118.0	48.0	89.0	0.0	.	93	.	.	Atlas-SNP
VCAM1	7412	hgsc.bcm.edu	hg19	1	101194785	101194785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	VCAM1	NM_001078	exon5	c.A1051G	p.I351V	ACCCAGATAGACA	.	198.0	73.0	163.0	0.0	.	111	.	.	Atlas-SNP
SPAG17	200162	hgsc.bcm.edu	hg19	1	118584651	118584651	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	SPAG17	NM_206996	exon21	c.G2829A	p.E943E	ATGTTGCTCTTCT	.	97.0	28.0	82.0	0.0	.	263	.	.	Atlas-SNP
ATF3	467	hgsc.bcm.edu	hg19	1	212792748	212792748	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	ATF3	NM_001674	exon4	c.G397A	p.E133K	CAGATTGAGGAGC	.	124.0	41.0	79.0	0.0	.	22	.	.	Atlas-SNP
DISP1	84976	hgsc.bcm.edu	hg19	1	223116176	223116176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	DISP1	NM_032890	exon4	c.G11A	p.S4N	CTATGAGCAATGG	.	153.0	7.0	111.0	0.0	.	145	.	.	Atlas-SNP
OTOF	9381	hgsc.bcm.edu	hg19	2	26681020	26681020	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	OTOF	NM_194323	exon29	c.G3581T	p.R1194L	TTGTACCGGGTGC	.	163.0	67.0	135.0	0.0	.	524	.	.	Atlas-SNP
MRPL35	51318	hgsc.bcm.edu	hg19	2	86433255	86433255	+	Missense_Mutation	SNP	G	G	T	rs17851803	alternate_allele	TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	MRPL35	NM_016622	exon2	c.G70T	p.A24S	ATTTTGGCATCTT	.	426.0	167.0	352.0	1.0	.	23	.	G|1.000;|0.000	Atlas-SNP
DNAH7	56171	hgsc.bcm.edu	hg19	2	196799358	196799358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	DNAH7	NM_018897	exon21	c.G3428T	p.W1143L	ACCAACCACTTCT	.	201.0	77.0	193.0	0.0	.	512	.	.	Atlas-SNP
SF3B1	23451	hgsc.bcm.edu	hg19	2	198274569	198274569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	SF3B1	NM_012433	exon7	c.G829T	p.A277S	GTGTCGCATGGCC	.	155.0	60.0	142.0	0.0	.	1038	.	.	Atlas-SNP
ABCA12	26154	hgsc.bcm.edu	hg19	2	215848388	215848388	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	ABCA12	NM_173076	exon29	c.C4365T	p.L1455L	CTCGTGGAGCTGC	.	130.0	56.0	121.0	0.0	.	368	.	.	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	G	rs121913396	bycluster	TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	CTNNB1,gallbladder,other,+1,128	CTNNB1	NM_001098209	exon3	c.A95G	p.D32G	ACCTGGACTCTGG	.	258.0	84.0	161.0	0.0	.	4904	.	.	Atlas-SNP
CACNA2D2	9254	hgsc.bcm.edu	hg19	3	50404287	50404287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	CACNA2D2	NM_001174051	exon30	c.G2585A	p.R862H	TGGGTACGGTTGC	.	52.0	6.0	46.0	0.0	.	82	.	.	Atlas-SNP
CADPS	8618	hgsc.bcm.edu	hg19	3	62648033	62648033	+	Silent	SNP	G	G	T	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	CADPS	NM_003716	exon4	c.C925A	p.R309R	GCTCTCGTCTGAT	.	42.0	24.0	67.0	0.0	.	387	.	.	Atlas-SNP
LRIG1	26018	hgsc.bcm.edu	hg19	3	66430695	66430695	+	Missense_Mutation	SNP	T	T	G	rs199537042	alternate_allele	TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	LRIG1	NM_015541	exon19	c.A3274C	p.K1092Q	AGCTTTTTGGTGC	.	74.0	26.0	81.0	0.0	.	138	.	.	Atlas-SNP
EPHA3	2042	hgsc.bcm.edu	hg19	3	89259351	89259351	+	Silent	SNP	C	C	T	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	EPHA3	NM_005233	exon3	c.C495T	p.N165N	GCTCAACACTGAG	.	106.0	45.0	117.0	0.0	.	501	.	.	Atlas-SNP
IFT122	55764	hgsc.bcm.edu	hg19	3	129239078	129239078	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	IFT122	NM_052985	exon31	c.C3849G	p.C1283W	CTACTGCCGCAGG	.	31.0	5.0	24.0	0.0	.	117	.	.	Atlas-SNP
FAM157A	728262	hgsc.bcm.edu	hg19	3	197880167	197880167	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	FAM157A	NM_001145248	exon2	c.G246A	p.Q82Q	GCAGCAGCAGCAA	.	315.0	21.0	276.0	0.0	.	4	.	.	Atlas-SNP
TMEM175	84286	hgsc.bcm.edu	hg19	4	944244	944244	+	Silent	SNP	A	A	T	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	TMEM175	NM_032326	exon4	c.A228T	p.T76T	GGCAACACGGATT	.	177.0	83.0	149.0	0.0	.	44	.	.	Atlas-SNP
EVC2	132884	hgsc.bcm.edu	hg19	4	5620343	5620343	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	EVC2	NM_147127	exon15	c.T2568A	p.H856Q	GCAGCCATGGACC	.	159.0	83.0	147.0	0.0	.	202	.	.	Atlas-SNP
PLRG1	5356	hgsc.bcm.edu	hg19	4	155457860	155457860	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	PLRG1	NM_002669	exon15	c.A1522C	p.I508L	TGATAATTTCTGG	.	215.0	94.0	201.0	0.0	.	43	.	.	Atlas-SNP
PLRG1	5356	hgsc.bcm.edu	hg19	4	155460301	155460301	+	Silent	SNP	T	T	C	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	PLRG1	NM_002669	exon12	c.A1107G	p.T369T	GTGATTTGTTAAT	.	135.0	65.0	126.0	0.0	.	43	.	.	Atlas-SNP
KIAA0825	285600	hgsc.bcm.edu	hg19	5	93798152	93798152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	KIAA0825	NM_001145678	exon12	c.A2186G	p.H729R	TTACAATGAGTGT	.	558.0	332.0	314.0	0.0	.	172	.	.	Atlas-SNP
PCDH12	51294	hgsc.bcm.edu	hg19	5	141324975	141324975	+	Missense_Mutation	SNP	C	C	T	rs3833449	bycluster	TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	PCDH12	NM_016580	exon4	c.G3526A	p.G1176S	TGCTGCCTCTGCT	.	125.0	14.0	43.0	0.0	.	133	.	.	Atlas-SNP
PCDH12	51294	hgsc.bcm.edu	hg19	5	141324976	141324976	+	Missense_Mutation	SNP	T	T	G	rs13188049	bycluster	TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	PCDH12	NM_016580	exon4	c.A3525C	p.R1175S	GCTGCCTCTGCTC	.	125.0	12.0	44.0	0.0	.	133	.	.	Atlas-SNP
GABRA1	2554	hgsc.bcm.edu	hg19	5	161317904	161317904	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	GABRA1	NM_001127643	exon9	c.G704C	p.G235A	TCTCAGGAGAATA	.	110.0	67.0	69.0	0.0	.	132	.	.	Atlas-SNP
DRD1	1812	hgsc.bcm.edu	hg19	5	174869355	174869355	+	Missense_Mutation	SNP	G	G	A	rs200037245		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	DRD1	NM_000794	exon2	c.C748T	p.P250S	CGACAGGCTTTCC	.	122.0	31.0	65.0	0.0	.	56	.	G|0.999;A|0.001	Atlas-SNP
DPCR1	135656	hgsc.bcm.edu	hg19	6	30918818	30918818	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	DPCR1	NM_080870	exon2	c.G2577A	p.E859E	AGCAGAGCCTACA	.	88.0	44.0	70.0	0.0	.	99	.	.	Atlas-SNP
DDX39B	7919	hgsc.bcm.edu	hg19	6	31500561	31500561	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	DDX39B,NS,carcinoma,0,1	DDX39B	NM_004640	exon7	c.A863G	p.N288S	ACCTGGTTGAACT	.	142.0	65.0	101.0	0.0	.	38	.	.	Atlas-SNP
TAS2R39	259285	hgsc.bcm.edu	hg19	7	142880762	142880762	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	TAS2R39	NM_176881	exon1	c.T251C	p.I84T	CCAGAATAGCTCT	.	78.0	34.0	54.0	0.0	.	42	.	.	Atlas-SNP
SH2D4A	63898	hgsc.bcm.edu	hg19	8	19192209	19192209	+	Silent	SNP	T	T	A	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	SH2D4A	NM_022071	exon4	c.T354A	p.S118S	TCACTCTGAAGAA	.	126.0	62.0	98.0	0.0	.	49	.	.	Atlas-SNP
NRG1	3084	hgsc.bcm.edu	hg19	8	32505644	32505644	+	Silent	SNP	G	G	A	rs192228210	bycluster;by1000genomes;alternate_allele	TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	NRG1	NM_013959	exon1	c.G408A	p.S136S	GGTGTCGTCTGAG	.	110.0	19.0	93.0	0.0	.	260	.	G|1.000;T|0.000	Atlas-SNP
CCDC171	203238	hgsc.bcm.edu	hg19	9	15778979	15778979	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	.	NM_173550	exon20	c.C2912A	p.S971X	CAGCATCGTTGCA	.	41.0	24.0	111.0	0.0	.	.	.	.	Atlas-SNP
CCDC171	203238	hgsc.bcm.edu	hg19	9	15778980	15778980	+	Silent	SNP	G	G	C	rs375214888	alternate_allele	TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	.	NM_173550	exon20	c.G2913C	p.S971S	AGCATCGTTGCAG	.	41.0	24.0	110.0	0.0	.	.	.	.	Atlas-SNP
ANKRD18B	441459	hgsc.bcm.edu	hg19	9	33558114	33558114	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	ANKRD18B	NM_001244752	exon12	c.T2200C	p.F734L	GAAGACTTCAGTT	.	1103.0	733.0	696.0	1.0	.	46	.	.	Atlas-SNP
FRMPD1	22844	hgsc.bcm.edu	hg19	9	37707441	37707441	+	Missense_Mutation	SNP	G	G	T	rs2296556	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	FRMPD1	NM_014907	exon3	c.G130T	p.A44S	GGGCCCGCCAGGA	.	104.0	23.0	93.0	0.0	.	237	.	G|0.935;A|0.065	Atlas-SNP
FANCC	2176	hgsc.bcm.edu	hg19	9	98011462	98011462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	FANCC_ENST00000289081,caecum,carcinoma,0,1	FANCC	NM_001243743	exon2	c.G112T	p.V38L	GAGCCACGTGAAG	.	83.0	44.0	82.0	0.0	.	53	.	.	Atlas-SNP
TMEM26	219623	hgsc.bcm.edu	hg19	10	63170436	63170436	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	TMEM26	NM_178505	exon6	c.A751C	p.S251R	CGGCACTGTACTG	.	264.0	126.0	203.0	0.0	.	47	.	.	Atlas-SNP
GRID1	2894	hgsc.bcm.edu	hg19	10	87489367	87489367	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	GRID1	NM_017551	exon9	c.C1238T	p.A413V	CATGTCGCCAACT	.	101.0	6.0	89.0	0.0	.	204	.	.	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	hg19	11	1279381	1279381	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	MUC5B	NM_002458	exon42	c.G16503A	p.Q5501Q	AGGGCAGGAGTCC	.	117.0	47.0	160.0	0.0	.	473	.	.	Atlas-SNP
APLNR	187	hgsc.bcm.edu	hg19	11	57004140	57004140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	APLNR	NM_005161	exon1	c.G339A	p.M113I	GGCGTACATGTTG	.	49.0	20.0	40.0	0.0	.	62	.	.	Atlas-SNP
GUCY1A2	2977	hgsc.bcm.edu	hg19	11	106888708	106888708	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	GUCY1A2	NM_000855	exon1	c.A74T	p.E25V	CCCTCCTCCTCCG	.	74.0	18.0	52.0	0.0	.	180	.	.	Atlas-SNP
EXPH5	23086	hgsc.bcm.edu	hg19	11	108382004	108382004	+	Silent	SNP	A	A	C	rs369244769	alternate_allele	TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	EXPH5	NM_015065	exon6	c.T4230G	p.S1410S	ATTTTCAGATTTT	.	108.0	50.0	142.0	0.0	.	193	.	.	Atlas-SNP
MEDAG	84935	hgsc.bcm.edu	hg19	13	31495898	31495898	+	Silent	SNP	G	G	A	rs375543579		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	C13orf33,caecum,carcinoma,0,1	.	NM_032849	exon4	c.G702A	p.T234T	GGAGACGATTAAG	.	200.0	76.0	181.0	0.0	.	.	.	.	Atlas-SNP
REM2	161253	hgsc.bcm.edu	hg19	14	23355255	23355255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	REM2	NM_173527	exon4	c.G542A	p.R181Q	GGCTGCGGGACCA	.	108.0	48.0	58.0	0.0	.	21	.	.	Atlas-SNP
NOVA1	4857	hgsc.bcm.edu	hg19	14	26949340	26949340	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	NOVA1	NM_006489	exon3	c.A290T	p.E97V	ACTCGCTCAGTAG	.	77.0	26.0	54.0	0.0	.	146	.	.	Atlas-SNP
GABRA5	2558	hgsc.bcm.edu	hg19	15	27126102	27126102	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	GABRA5,rectum,carcinoma,-1,1	GABRA5	NM_001165037	exon4	c.C196A	p.P66T	CTTCGGCCCGGGC	.	82.0	37.0	108.0	0.0	.	127	.	.	Atlas-SNP
CHRNA7	1139	hgsc.bcm.edu	hg19	15	32455518	32455518	+	Silent	SNP	G	G	A	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	CHRNA7	NM_001190455	exon9	c.G1059A	p.G353G	CGACGGGGGCAAG	.	428.0	220.0	411.0	0.0	.	57	.	.	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	hg19	15	63922816	63922816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	HERC1	NM_003922	exon69	c.C12815A	p.P4272Q	CCCTCTGGCAAGC	.	110.0	5.0	91.0	0.0	.	624	.	.	Atlas-SNP
INTS2	57508	hgsc.bcm.edu	hg19	17	59958425	59958425	+	Missense_Mutation	SNP	G	G	A	rs201173583		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	INTS2	NM_020748	exon17	c.C2221T	p.R741W	TTCGCCGTAGCAG	.	192.0	59.0	81.0	0.0	.	89	.	.	Atlas-SNP
MYOM1	8736	hgsc.bcm.edu	hg19	18	3100192	3100192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	MYOM1	NM_003803	exon25	c.G3692A	p.R1231H	AGTAAACGTTTCA	.	184.0	49.0	144.0	0.0	.	192	.	.	Atlas-SNP
CHAF1A	10036	hgsc.bcm.edu	hg19	19	4428721	4428721	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	CHAF1A	NM_005483	exon8	c.G1438T	p.A480S	GTCCTGGCCCCTC	.	69.0	38.0	73.0	0.0	.	69	.	.	Atlas-SNP
CHAF1A	10036	hgsc.bcm.edu	hg19	19	4428728	4428728	+	Missense_Mutation	SNP	G	G	T	rs373148905	alternate_allele	TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	CHAF1A,NS,carcinoma,0,1	CHAF1A	NM_005483	exon8	c.G1445T	p.R482L	CCCCTCGGCGTCG	.	66.0	39.0	69.0	0.0	.	69	.	.	Atlas-SNP
C19orf80	55908	hgsc.bcm.edu	hg19	19	11350522	11350522	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	C19orf80	NM_018687	exon1	c.A209G	p.Y70C	GTCTCTATGGCCG	.	134.0	71.0	144.0	0.0	.	8	.	.	Atlas-SNP
GIPC1	10755	hgsc.bcm.edu	hg19	19	14591536	14591536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	GIPC1	NM_202468	exon4	c.G343A	p.G115S	TCTGGCCCCCCAG	.	98.0	31.0	80.0	0.0	.	21	.	.	Atlas-SNP
TUBB1	81027	hgsc.bcm.edu	hg19	20	57594619	57594619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	TUBB1	NM_030773	exon1	c.C42A	p.N14K	TGGCAACCAGATC	.	105.0	35.0	74.0	0.0	.	42	.	.	Atlas-SNP
ZNF831	128611	hgsc.bcm.edu	hg19	20	57767039	57767039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	ZNF831	NM_178457	exon1	c.C965T	p.A322V	CGACGGCAGCGGA	.	266.0	141.0	130.0	0.0	.	287	.	.	Atlas-SNP
KCNQ2	3785	hgsc.bcm.edu	hg19	20	62045484	62045484	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	KCNQ2	NM_172107	exon14	c.G1588T	p.E530X	GGTCCTCGGTCAC	.	210.0	97.0	140.0	0.0	.	201	.	.	Atlas-SNP
IL36B	27177	hgsc.bcm.edu	hg19	2	113785625	113785635	+	Frame_Shift_Del	DEL	TTATTGTGGAA	TTATTGTGGAA	-	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	TTATTGTGGAA	TTATTGTGGAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	IL36B	NM_173178	exon5	c.320_330del	p.107_110del	.	.	104.0	26.0	73.0	0.0	.	69	.	.	Atlas-INDEL
FZD4	8322	hgsc.bcm.edu	hg19	11	86665880	86665881	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	FZD4	NM_012193	exon1	c.248_249insA	p.T83fs	.	.	124.0	29.0	140.0	0.0	.	52	.	.	Atlas-INDEL
MUC5B	727897	hgsc.bcm.edu	hg19	11	1279360	1279376	+	Frame_Shift_Del	DEL	GCCTGTGTGCCCGCCAG	GCCTGTGTGCCCGCCAG	-	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	GCCTGTGTGCCCGCCAG	GCCTGTGTGCCCGCCAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	MUC5B	NM_002458	exon42	c.16481_16497del	p.5494_5499del	.	.	124.0	41.0	187.0	0.0	.	473	.	.	Atlas-INDEL
MCF2L	23263	hgsc.bcm.edu	hg19	13	113731386	113731386	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	MCF2L	NM_001112732	exon13	c.1520delT	p.F507fs	.	.	411.0	165.0	312.0	0.0	.	182	.	.	Atlas-INDEL
BPHL	670	hgsc.bcm.edu	hg19	6	3140642	3140660	+	Frame_Shift_Del	DEL	GCCCCGGGTCCAGTGCCCC	GCCCCGGGTCCAGTGCCCC	-	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	GCCCCGGGTCCAGTGCCCC	GCCCCGGGTCCAGTGCCCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	BPHL	NM_004332	exon6	c.686_704del	p.229_235del	.	.	91.0	20.0	99.0	0.0	.	32	.	.	Atlas-INDEL
LMTK2	22853	hgsc.bcm.edu	hg19	7	97822810	97822814	+	Frame_Shift_Del	DEL	CTCTT	CTCTT	-	novel		TCGA-G3-AAV1-01A-11D-A382-10	TCGA-G3-AAV1-10A-01D-A385-10	CTCTT	CTCTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	0085fc07-88e4-460a-b85a-aa45fb9b1c59	9c5db754-20da-47ad-be09-78f6e300e818	.	LMTK2	NM_014916	exon11	c.3032_3036del	p.1011_1012del	.	.	73.0	27.0	57.0	0.0	.	228	.	.	Atlas-INDEL