Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
KIAA0319L	79932	hgsc.bcm.edu	hg19	1	35921730	35921730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	KIAA0319L	NM_024874	exon10	c.A1540G	p.T514A	GCAGGGTGATCAC	.	120.0	16.0	139.0	0.0	.	156	.	.	Atlas-SNP
STXBP3	6814	hgsc.bcm.edu	hg19	1	109340861	109340861	+	Splice_Site	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	STXBP3	NM_007269	exon16	c.1449+2T>C	.	TGGAGGTAAAAAT	.	344.0	43.0	343.0	0.0	.	44	.	.	Atlas-SNP
MEF2D	4209	hgsc.bcm.edu	hg19	1	156450690	156450690	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	MEF2D	NM_005920	exon4	c.C332G	p.P111R	AGCAGGGGGCTCT	.	51.0	7.0	45.0	0.0	.	43	.	.	Atlas-SNP
SLAMF8	56833	hgsc.bcm.edu	hg19	1	159802826	159802826	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SLAMF8	NM_020125	exon3	c.A528G	p.P176P	GGAACCACACAGC	.	65.0	7.0	64.0	0.0	.	30	.	.	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	hg19	1	181741311	181741311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	CACNA1E_ENST00000367573,NS,carcinoma,0,4	CACNA1E	NM_001205293	exon37	c.G5083A	p.G1695S	CGCTGCGGCACCG	.	111.0	17.0	81.0	1.0	.	778	.	.	Atlas-SNP
TEDDM1	127670	hgsc.bcm.edu	hg19	1	182369506	182369506	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	TEDDM1	NM_172000	exon1	c.C115G	p.L39V	TTAAGAGGGAGCC	.	121.0	15.0	102.0	0.0	.	32	.	.	Atlas-SNP
SHCBP1L	81626	hgsc.bcm.edu	hg19	1	182872216	182872216	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SHCBP1L	NM_030933	exon9	c.C1668T	p.T556T	GTTACTGGTTCTG	.	83.0	19.0	82.0	0.0	.	64	.	.	Atlas-SNP
TP53BP2	7159	hgsc.bcm.edu	hg19	1	223983762	223983762	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	TP53BP2	NM_001031685	exon13	c.A2479T	p.S827C	TGTCACTGTTCTC	.	96.0	14.0	60.0	0.0	.	144	.	.	Atlas-SNP
KIF26B	55083	hgsc.bcm.edu	hg19	1	245849634	245849634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	KIF26B	NM_018012	exon12	c.G3349A	p.E1117K	TCTAGGGAGTCCT	.	74.0	8.0	58.0	0.0	.	343	.	.	Atlas-SNP
OR2T12	127064	hgsc.bcm.edu	hg19	1	248458182	248458182	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	OR2T12	NM_001004692	exon1	c.G699A	p.K233K	GGCCTTCTTGCGG	.	343.0	55.0	290.0	0.0	.	113	.	.	Atlas-SNP
RSAD2	91543	hgsc.bcm.edu	hg19	2	7027257	7027257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	RSAD2	NM_080657	exon3	c.A700G	p.T234A	GACATGACGGAAC	.	86.0	13.0	81.0	0.0	.	38	.	.	Atlas-SNP
CLHC1	130162	hgsc.bcm.edu	hg19	2	55407735	55407735	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	.	NM_152385	exon11	c.T1295G	p.L432R	TTGTGCAGGCCAC	.	68.0	13.0	80.0	0.0	.	.	.	.	Atlas-SNP
GCFC2	6936	hgsc.bcm.edu	hg19	2	75897385	75897385	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	.	NM_003203	exon15	c.A1982C	p.N661T	AGTCCATTCCAAA	.	44.0	11.0	63.0	0.0	.	.	.	.	Atlas-SNP
CTNNA2	1496	hgsc.bcm.edu	hg19	2	80782957	80782957	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	CTNNA2	NM_001164883	exon12	c.C1680G	p.N560K	GGAGAACTATGAA	.	78.0	9.0	87.0	0.0	.	462	.	.	Atlas-SNP
SLC9A4	389015	hgsc.bcm.edu	hg19	2	103120102	103120102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SLC9A4	NM_001011552	exon3	c.G916A	p.V306I	CTCATCGTCTTCA	.	113.0	18.0	113.0	0.0	.	115	.	.	Atlas-SNP
XIRP2	129446	hgsc.bcm.edu	hg19	2	168107754	168107754	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	XIRP2	NM_152381	exon9	c.G9852T	p.V3284V	CATGGTGCCCGAC	.	81.0	22.0	108.0	0.0	.	914	.	.	Atlas-SNP
CERKL	375298	hgsc.bcm.edu	hg19	2	182412568	182412568	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	CERKL	NM_001030311	exon10	c.A1218G	p.A406A	TCCCTGTGCCCTC	.	116.0	12.0	106.0	0.0	.	138	.	.	Atlas-SNP
BMPR2	659	hgsc.bcm.edu	hg19	2	203417602	203417602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	BMPR2	NM_001204	exon11	c.A1577G	p.Q526R	CTATGCAGAATGA	.	59.0	4.0	47.0	0.0	.	142	.	.	Atlas-SNP
ALPP	250	hgsc.bcm.edu	hg19	2	233246210	233246210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ALPP	NM_001632	exon11	c.G1313A	p.S438N	CAGGGAGCCCCGA	.	211.0	41.0	195.0	0.0	.	53	.	.	Atlas-SNP
ZNF385D	79750	hgsc.bcm.edu	hg19	3	21462713	21462713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ZNF385D	NM_024697	exon8	c.C1181T	p.P394L	TAGTAAGGAGCAA	.	54.0	6.0	41.0	0.0	.	93	.	.	Atlas-SNP
CELSR3	1951	hgsc.bcm.edu	hg19	3	48696462	48696462	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	CELSR3	NM_001407	exon1	c.C3606T	p.V1202V	GTCGGAGACATCG	.	69.0	12.0	71.0	0.0	.	237	.	.	Atlas-SNP
FLNB	2317	hgsc.bcm.edu	hg19	3	58089691	58089691	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	FLNB	NM_001457	exon10	c.C1489T	p.L497L	GAGGGTCTGGAGG	.	70.0	13.0	96.0	0.0	.	430	.	.	Atlas-SNP
PRICKLE2	166336	hgsc.bcm.edu	hg19	3	64133075	64133075	+	Missense_Mutation	SNP	C	C	A	rs372367565	alternate_allele	TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PRICKLE2	NM_198859	exon7	c.G1091T	p.R364L	GACAGCCGGTTAG	.	65.0	11.0	61.0	0.0	.	88	.	.	Atlas-SNP
ADAMTS9	56999	hgsc.bcm.edu	hg19	3	64633684	64633684	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ADAMTS9	NM_182920	exon11	c.G1642C	p.G548R	GTACTCCATTGAC	.	35.0	7.0	22.0	0.0	.	206	.	.	Atlas-SNP
FRMD4B	23150	hgsc.bcm.edu	hg19	3	69246073	69246073	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	FRMD4B	NM_015123	exon13	c.A1070G	p.Y357C	TCCAAGTAAAACT	.	53.0	8.0	70.0	0.0	.	90	.	.	Atlas-SNP
IL12A	3592	hgsc.bcm.edu	hg19	3	159710887	159710887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	IL12A	NM_000882	exon3	c.C353T	p.A118V	TGGAGGCCTGTTT	.	89.0	17.0	85.0	0.0	.	23	.	.	Atlas-SNP
TBL1XR1	79718	hgsc.bcm.edu	hg19	3	176755936	176755936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	TBL1XR1	NM_024665	exon12	c.G1072T	p.D358Y	TTGGGTCCCATTT	.	251.0	42.0	201.0	0.0	.	87	.	.	Atlas-SNP
LSG1	55341	hgsc.bcm.edu	hg19	3	194371616	194371616	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	LSG1	NM_018385	exon10	c.A1413G	p.V471V	TAGTGATACAGGA	.	75.0	9.0	41.0	0.0	.	38	.	.	Atlas-SNP
FGFR3	2261	hgsc.bcm.edu	hg19	4	1803246	1803246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	FGFR3	NM_001163213	exon5	c.C598T	p.R200C	GAGCACCGCATTG	.	46.0	10.0	50.0	0.0	.	3320	.	.	Atlas-SNP
HGFAC	3083	hgsc.bcm.edu	hg19	4	3449280	3449280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	HGFAC,colon,carcinoma,0,1	HGFAC	NM_001528	exon11	c.G1417A	p.V473M	ACGGACGTGACGC	.	267.0	43.0	245.0	0.0	.	69	.	.	Atlas-SNP
ENOPH1	58478	hgsc.bcm.edu	hg19	4	83372214	83372214	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ENOPH1	NM_021204	exon3	c.C205A	p.L69M	GCCCACCTGGATG	.	83.0	17.0	71.0	0.0	.	26	.	.	Atlas-SNP
LARP1B	55132	hgsc.bcm.edu	hg19	4	128999091	128999091	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	LARP1B	NM_032239	exon4	c.C191G	p.A64G	ATGAGGCTCAGTC	.	289.0	48.0	302.0	0.0	.	120	.	.	Atlas-SNP
TLR3	7098	hgsc.bcm.edu	hg19	4	186998195	186998195	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	TLR3	NM_003265	exon2	c.A422G	p.N141S	AAAATAATCCCTT	.	137.0	24.0	101.0	0.0	.	83	.	.	Atlas-SNP
SLC6A19	340024	hgsc.bcm.edu	hg19	5	1216776	1216776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SLC6A19	NM_001003841	exon7	c.C991A	p.Q331K	GCCACACAGCGCT	.	62.0	9.0	58.0	0.0	.	99	.	.	Atlas-SNP
PDZD2	23037	hgsc.bcm.edu	hg19	5	32074465	32074465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PDZD2	NM_178140	exon17	c.C3253T	p.P1085S	AGCGCACCCAAAT	.	59.0	10.0	67.0	0.0	.	306	.	.	Atlas-SNP
XRCC4	7518	hgsc.bcm.edu	hg19	5	82649043	82649043	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	XRCC4	NM_022406	exon8	c.C993T	p.D331D	AGAAGACCTCTTT	.	261.0	56.0	238.0	0.0	.	37	.	.	Atlas-SNP
PJA2	9867	hgsc.bcm.edu	hg19	5	108714881	108714881	+	Missense_Mutation	SNP	G	G	T	rs143063686	alternate_allele	TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PJA2	NM_014819	exon4	c.C307A	p.P103T	AAGTGGGAATTTC	.	77.0	9.0	90.0	0.0	.	53	.	G|1.000;A|0.000	Atlas-SNP
APC	324	hgsc.bcm.edu	hg19	5	112179045	112179045	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	APC	NM_001127510	exon17	c.A7754T	p.K2585I	AAGCAAAAAGTGA	.	53.0	7.0	61.0	0.0	.	4158	.	.	Atlas-SNP
RAPGEF6	51735	hgsc.bcm.edu	hg19	5	130778169	130778169	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	RAPGEF6	NM_001164387	exon25	c.G3522T	p.M1174I	TGACCTCATAGGC	.	131.0	25.0	128.0	0.0	.	361	.	.	Atlas-SNP
SPINK5	11005	hgsc.bcm.edu	hg19	5	147481371	147481371	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SPINK5	NM_001127699	exon15	c.A1330T	p.R444W	AAATCCAGGAAAA	.	92.0	9.0	93.0	0.0	.	245	.	.	Atlas-SNP
TIMD4	91937	hgsc.bcm.edu	hg19	5	156375492	156375492	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	TIMD4	NM_138379	exon5	c.T779A	p.L260H	GATGGGAGATCCC	.	80.0	12.0	74.0	0.0	.	94	.	.	Atlas-SNP
HIST1H1C	3006	hgsc.bcm.edu	hg19	6	26056228	26056228	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	HIST1H1C	NM_005319	exon1	c.C429T	p.G143G	TGCGCCGCCAGCC	.	95.0	18.0	93.0	0.0	.	80	.	.	Atlas-SNP
HIST1H1C	3006	hgsc.bcm.edu	hg19	6	26056229	26056229	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	HIST1H1C	NM_005319	exon1	c.G428T	p.G143V	GCGCCGCCAGCCG	.	94.0	18.0	94.0	0.0	.	80	.	.	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	hg19	6	38775436	38775436	+	Silent	SNP	T	T	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	DNAH8	NM_001206927	exon24	c.T3201A	p.L1067L	CAGTCTTCAAAAA	.	122.0	28.0	101.0	0.0	.	1239	.	.	Atlas-SNP
ATG5	9474	hgsc.bcm.edu	hg19	6	106634468	106634468	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ATG5	NM_004849	exon8	c.A775C	p.S259R	GGTAGCTCAGATG	.	40.0	12.0	44.0	0.0	.	23	.	.	Atlas-SNP
ATG5	9474	hgsc.bcm.edu	hg19	6	106634473	106634473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ATG5	NM_004849	exon8	c.A770G	p.H257R	CTCAGATGTTCAC	.	40.0	12.0	44.0	0.0	.	23	.	.	Atlas-SNP
REV3L	5980	hgsc.bcm.edu	hg19	6	111670435	111670435	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	REV3L	NM_002912	exon20	c.A7405G	p.I2469V	TCATGATTCTCCA	.	88.0	16.0	111.0	0.0	.	386	.	.	Atlas-SNP
ZC3H12D	340152	hgsc.bcm.edu	hg19	6	149777857	149777857	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ZC3H12D	NM_207360	exon4	c.G625T	p.E209X	TCCACTCGGGGTT	.	35.0	7.0	50.0	0.0	.	21	.	.	Atlas-SNP
PHF10	55274	hgsc.bcm.edu	hg19	6	170116083	170116083	+	Nonsense_Mutation	SNP	G	G	A	rs140258100	alternate_allele	TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PHF10	NM_018288	exon5	c.C511T	p.Q171X	TTCGTTGACGTTC	.	175.0	30.0	238.0	0.0	.	76	.	G|1.000;C|0.000	Atlas-SNP
SDK1	221935	hgsc.bcm.edu	hg19	7	3998620	3998620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SDK1	NM_152744	exon8	c.C1208T	p.T403I	AAGAAACTGTGGA	.	58.0	9.0	56.0	0.0	.	361	.	.	Atlas-SNP
ABCB5	340273	hgsc.bcm.edu	hg19	7	20685483	20685483	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ABCB5	NM_001163941	exon8	c.C783A	p.A261A	TAGGGCCCAGGAG	.	122.0	19.0	111.0	0.0	.	357	.	.	Atlas-SNP
ABCB5	340273	hgsc.bcm.edu	hg19	7	20685484	20685484	+	Missense_Mutation	SNP	C	C	G	rs2074000	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes;alternate_allele	TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ABCB5	NM_001163941	exon8	c.C784G	p.Q262E	AGGGCCCAGGAGA	.	124.0	19.0	112.0	0.0	.	357	.	C|0.847;A|0.153	Atlas-SNP
GLI3	2737	hgsc.bcm.edu	hg19	7	42005488	42005488	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	GLI3	NM_000168	exon15	c.C3183T	p.H1061H	GGACGAGTGGAAG	.	74.0	9.0	65.0	0.0	.	312	.	.	Atlas-SNP
ZNF92	168374	hgsc.bcm.edu	hg19	7	64863556	64863556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ZNF92	NM_152626	exon4	c.A529G	p.N177D	TGTAAAAACCGTG	.	53.0	12.0	50.0	0.0	.	68	.	.	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100683668	100683668	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	MUC17	NM_001040105	exon3	c.A8971T	p.S2991C	TTAACAAGTATGT	.	66.0	11.0	58.0	0.0	.	804	.	.	Atlas-SNP
CTTNBP2	83992	hgsc.bcm.edu	hg19	7	117385885	117385885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	CTTNBP2	NM_033427	exon14	c.G3535T	p.A1179S	TCTTACCGCTACT	.	66.0	7.0	71.0	0.0	.	200	.	.	Atlas-SNP
PAX4	5078	hgsc.bcm.edu	hg19	7	127255566	127255566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PAX4	NM_006193	exon1	c.G9T	p.Q3H	CCCAAGCTGGTTC	.	56.0	14.0	60.0	0.0	.	66	.	.	Atlas-SNP
ATP6V1F	9296	hgsc.bcm.edu	hg19	7	128505594	128505594	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ATP6V1F	NM_001198909	exon3	c.A406T	p.R136W	CTGCGCAGGGCCA	.	66.0	9.0	55.0	0.0	.	12	.	.	Atlas-SNP
ABP1	26	hgsc.bcm.edu	hg19	7	150555959	150555959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ABP1	NM_001091	exon3	c.C1679T	p.S560F	AGTACTCCTGGGA	.	155.0	21.0	154.0	0.0	.	92	.	.	Atlas-SNP
CHRNA2	1135	hgsc.bcm.edu	hg19	8	27321444	27321444	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	CHRNA2	NM_000742	exon6	c.C516T	p.H172H	CACCCAGTGCACA	.	74.0	10.0	75.0	0.0	.	48	.	.	Atlas-SNP
NSMAF	8439	hgsc.bcm.edu	hg19	8	59536325	59536325	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	NSMAF	NM_001144772	exon7	c.T492C	p.Y164Y	AAAAACATATTCC	.	198.0	55.0	188.0	0.0	.	156	.	.	Atlas-SNP
LRRC69	100130742	hgsc.bcm.edu	hg19	8	92114976	92114976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	LRRC69	NM_001129890	exon1	c.G87A	p.M29I	AAAGATGCCCTCA	.	106.0	24.0	102.0	0.0	.	24	.	.	Atlas-SNP
ZNF510	22869	hgsc.bcm.edu	hg19	9	99522338	99522338	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ZNF510	NM_014930	exon6	c.A774G	p.K258K	TCCAATTTTATTA	.	70.0	15.0	76.0	0.0	.	59	.	.	Atlas-SNP
MYO3A	53904	hgsc.bcm.edu	hg19	10	26457744	26457744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	MYO3A	NM_017433	exon28	c.C3215T	p.S1072L	TGTGTTCAAGAAG	.	85.0	14.0	83.0	0.0	.	371	.	.	Atlas-SNP
RAB18	22931	hgsc.bcm.edu	hg19	10	27821473	27821473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	RAB18	NM_001256410	exon5	c.C311T	p.P104L	TAACTCCCAGCTA	.	51.0	9.0	32.0	0.0	.	18	.	.	Atlas-SNP
RBP3	5949	hgsc.bcm.edu	hg19	10	48381913	48381913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	RBP3	NM_002900	exon4	c.C3736T	p.H1246Y	ACAGGTGGTCCTG	.	34.0	6.0	58.0	0.0	.	152	.	.	Atlas-SNP
CDH23	64072	hgsc.bcm.edu	hg19	10	73562794	73562794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	CDH23	NM_022124	exon52	c.A7622G	p.N2541S	GTCCCAATGGAGA	.	68.0	11.0	53.0	0.0	.	365	.	.	Atlas-SNP
ANXA7	310	hgsc.bcm.edu	hg19	10	75147452	75147452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ANXA7	NM_004034	exon8	c.G694A	p.G232S	CCTTGCCATAGGA	.	109.0	19.0	103.0	0.0	.	50	.	.	Atlas-SNP
TRPM5	29850	hgsc.bcm.edu	hg19	11	2429133	2429133	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	TRPM5	NM_014555	exon19	c.T2792A	p.V931E	CAGTTCACACGGG	.	117.0	16.0	97.0	0.0	.	86	.	.	Atlas-SNP
GRM5	2915	hgsc.bcm.edu	hg19	11	88241917	88241917	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	GRM5	NM_001143831	exon9	c.T3482A	p.V1161E	AGAGCCACCAGCT	.	60.0	7.0	34.0	0.0	.	414	.	.	Atlas-SNP
FAT3	120114	hgsc.bcm.edu	hg19	11	92495075	92495075	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	FAT3	NM_001008781	exon4	c.G3723T	p.V1241V	GGTGGTGGTTCAG	.	77.0	12.0	64.0	0.0	.	1822	.	.	Atlas-SNP
CEP57	9702	hgsc.bcm.edu	hg19	11	95546100	95546100	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	CEP57	NM_001243777	exon3	c.A207G	p.I69M	AGCCATATTTTCT	.	124.0	17.0	111.0	0.0	.	40	.	.	Atlas-SNP
NXPE1	120400	hgsc.bcm.edu	hg19	11	114398621	114398621	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	NXPE1	NM_152315	exon4	c.C410A	p.S137Y	ACTTTGGACCTTC	.	92.0	15.0	93.0	0.0	.	8	.	.	Atlas-SNP
IL10RA	3587	hgsc.bcm.edu	hg19	11	117869720	117869720	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	IL10RA	NM_001558	exon7	c.C1101T	p.S367S	CAATAGCACAGAC	.	38.0	9.0	54.0	0.0	.	46	.	.	Atlas-SNP
PANX3	116337	hgsc.bcm.edu	hg19	11	124489603	124489603	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PANX3	NM_052959	exon4	c.G951C	p.K317N	CAGAAAGATGCTA	.	124.0	22.0	125.0	0.0	.	52	.	.	Atlas-SNP
JAM3	83700	hgsc.bcm.edu	hg19	11	134014256	134014256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	JAM3	NM_032801	exon4	c.T377C	p.I126T	AGGAAATTGATGA	.	64.0	7.0	65.0	0.0	.	41	.	.	Atlas-SNP
CACNA1C	775	hgsc.bcm.edu	hg19	12	2794935	2794935	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	CACNA1C	NM_199460	exon47	c.G5856A	p.L1952L	GCAACTGACGCTC	.	125.0	22.0	129.0	0.0	.	1023	.	.	Atlas-SNP
ABCC9	10060	hgsc.bcm.edu	hg19	12	21995268	21995268	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ABCC9	NM_005691	exon27	c.A3453C	p.K1151N	AAAGTATTTCTGG	.	54.0	13.0	49.0	0.0	.	411	.	.	Atlas-SNP
STAT2	6773	hgsc.bcm.edu	hg19	12	56742763	56742763	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	STAT2	NM_005419	exon17	c.T1521C	p.Y507Y	GCCAACATAGGAG	.	43.0	6.0	27.0	0.0	.	70	.	.	Atlas-SNP
MDM1	56890	hgsc.bcm.edu	hg19	12	68719226	68719226	+	Missense_Mutation	SNP	T	T	C	rs374381882		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	MDM1	NM_017440	exon4	c.A628G	p.N210D	CCTGATTGGCTGC	.	130.0	16.0	122.0	0.0	.	74	.	.	Atlas-SNP
SACS	26278	hgsc.bcm.edu	hg19	13	23911712	23911712	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SACS	NM_014363	exon10	c.C6303A	p.S2101S	CTCCAAGGAACAA	.	62.0	12.0	57.0	0.0	.	871	.	.	Atlas-SNP
PABPC3	5042	hgsc.bcm.edu	hg19	13	25671982	25671982	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PABPC3	NM_030979	exon1	c.C1646A	p.P549H	CTGCCCCTCCTCA	.	72.0	17.0	73.0	0.0	.	129	.	.	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	hg19	13	77750664	77750664	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	MYCBP2	NM_015057	exon36	c.G5440T	p.E1814X	TGATCTCAGCTAT	.	93.0	15.0	93.0	0.0	.	1029	.	.	Atlas-SNP
NYNRIN	57523	hgsc.bcm.edu	hg19	14	24878595	24878595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	NYNRIN	NM_025081	exon4	c.A1595G	p.Q532R	CAGATCAGTCAGT	.	54.0	6.0	52.0	0.0	.	120	.	.	Atlas-SNP
NOVA1	4857	hgsc.bcm.edu	hg19	14	26949245	26949245	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	NOVA1	NM_006489	exon3	c.A385G	p.K129E	CTGTCTTGGCCAC	.	85.0	14.0	104.0	0.0	.	146	.	.	Atlas-SNP
NEMF	9147	hgsc.bcm.edu	hg19	14	50251848	50251848	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	NEMF	NM_004713	exon31	c.A3035C	p.K1012T	TTCACTTTATATC	.	86.0	21.0	79.0	0.0	.	79	.	.	Atlas-SNP
SYNE2	23224	hgsc.bcm.edu	hg19	14	64628942	64628942	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SYNE2	NM_182914	exon88	c.T16247C	p.M5416T	TCAGCATGTCTGG	.	54.0	11.0	57.0	0.0	.	577	.	.	Atlas-SNP
PCNX	22990	hgsc.bcm.edu	hg19	14	71444965	71444965	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PCNX	NM_014982	exon6	c.G1911A	p.E637E	TCCTGAGGGCAGA	.	43.0	5.0	54.0	0.0	.	198	.	.	Atlas-SNP
PSEN1	5663	hgsc.bcm.edu	hg19	14	73653618	73653618	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PSEN1	NM_000021	exon6	c.A538G	p.I180V	TCATTCATTTACT	.	141.0	26.0	155.0	0.0	.	38	.	.	Atlas-SNP
NRXN3	9369	hgsc.bcm.edu	hg19	14	79933569	79933569	+	Missense_Mutation	SNP	G	G	A	rs373319691	alternate_allele	TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	NRXN3	NM_004796	exon13	c.G2149A	p.A717T	GCTGGCGCTACGT	.	81.0	11.0	67.0	0.0	.	342	.	.	Atlas-SNP
CKMT1B	1159	hgsc.bcm.edu	hg19	15	43888719	43888719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	CKMT1B	NM_020990	exon7	c.G866A	p.G289D	GCCGAGGCCTCAA	.	156.0	24.0	167.0	0.0	.	10	.	.	Atlas-SNP
SEMA6D	80031	hgsc.bcm.edu	hg19	15	48058317	48058317	+	Silent	SNP	T	T	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SEMA6D	NM_153617	exon15	c.T1584G	p.S528S	TGCATCTCGTGAC	.	108.0	23.0	113.0	0.0	.	322	.	.	Atlas-SNP
ANKRD34C	390616	hgsc.bcm.edu	hg19	15	79585934	79585934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ANKRD34C	NM_001146341	exon2	c.C308A	p.S103Y	TGGTCTCCTTATT	.	60.0	11.0	63.0	0.0	.	29	.	.	Atlas-SNP
PRSS36	146547	hgsc.bcm.edu	hg19	16	31150725	31150725	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PRSS36	NM_173502	exon15	c.C2302G	p.P768A	GGGGCGGTGCTGA	.	84.0	16.0	103.0	0.0	.	50	.	.	Atlas-SNP
SHCBP1	79801	hgsc.bcm.edu	hg19	16	46617445	46617445	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SHCBP1	NM_024745	exon12	c.C1676G	p.A559G	TCTTCAGCATTTT	.	320.0	34.0	342.0	0.0	.	54	.	.	Atlas-SNP
TNS4	84951	hgsc.bcm.edu	hg19	17	38638655	38638655	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	TNS4	NM_032865	exon7	c.T1515C	p.N505N	GAGGTCATTGCTG	.	50.0	8.0	29.0	0.0	.	72	.	.	Atlas-SNP
TBX4	9496	hgsc.bcm.edu	hg19	17	59557329	59557329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	TBX4	NM_018488	exon6	c.A790G	p.S264G	CTGCAGAGGTGGG	.	79.0	10.0	65.0	0.0	.	69	.	.	Atlas-SNP
ANKRD30B	374860	hgsc.bcm.edu	hg19	18	14763926	14763926	+	Silent	SNP	A	A	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ANKRD30B	NM_001145029	exon7	c.A1062C	p.A354A	GCCAGCAAAAGAA	.	57.0	8.0	51.0	0.0	.	237	.	.	Atlas-SNP
SHC2	25759	hgsc.bcm.edu	hg19	19	430742	430742	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SHC2	NM_012435	exon9	c.A1116G	p.P372P	AGGAGATGGGCCC	.	41.0	11.0	63.0	0.0	.	47	.	.	Atlas-SNP
SLC44A2	57153	hgsc.bcm.edu	hg19	19	10742002	10742002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SLC44A2	NM_020428	exon6	c.A382G	p.S128G	GCTCGCAGCTCCC	.	57.0	9.0	49.0	0.0	.	56	.	.	Atlas-SNP
LPPR2	0	hgsc.bcm.edu	hg19	19	11475082	11475082	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	LPPR2	NM_001170635	exon10	c.C1000G	p.P334A	AGGGCCCCAGCCA	.	27.0	10.0	29.0	0.0	.	21	.	.	Atlas-SNP
NOTCH3	4854	hgsc.bcm.edu	hg19	19	15292445	15292445	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	NOTCH3	NM_000435	exon17	c.T2734A	p.C912S	GCGGGCAGGTGCA	.	94.0	17.0	101.0	0.0	.	340	.	.	Atlas-SNP
HSH2D	84941	hgsc.bcm.edu	hg19	19	16265269	16265269	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	HSH2D	NM_032855	exon7	c.G442C	p.E148Q	GCCGAGGAAGCTG	.	33.0	10.0	34.0	0.0	.	16	.	.	Atlas-SNP
ZNF568	374900	hgsc.bcm.edu	hg19	19	37413702	37413702	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ZNF568	NM_001204838	exon3	c.T30A	p.N10K	CAGCAATAGCTGT	.	53.0	9.0	47.0	0.0	.	106	.	.	Atlas-SNP
PAK4	10298	hgsc.bcm.edu	hg19	19	39660216	39660216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PAK4	NM_001014832	exon2	c.G23A	p.R8Q	AGAAGCGGGTGGA	.	102.0	19.0	109.0	0.0	.	40	.	.	Atlas-SNP
ARHGAP35	2909	hgsc.bcm.edu	hg19	19	47425519	47425519	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	.	NM_004491	exon1	c.A3587T	p.Q1196L	CATCCCAGGGTTA	.	41.0	5.0	60.0	0.0	.	.	.	.	Atlas-SNP
EBF4	57593	hgsc.bcm.edu	hg19	20	2730134	2730134	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	.	NM_001110514	exon9	c.C715A	p.R239S	CATGGCCGCAGGG	.	53.0	8.0	38.0	0.0	.	.	.	.	Atlas-SNP
SEL1L2	80343	hgsc.bcm.edu	hg19	20	13830846	13830846	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SEL1L2	NM_001271539	exon17	c.G1599T	p.L533L	AAAAAACAGGATA	.	62.0	14.0	50.0	0.0	.	103	.	.	Atlas-SNP
CNBD2	140894	hgsc.bcm.edu	hg19	20	34568392	34568392	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	.	NM_080834	exon4	c.T255C	p.P85P	CTTTCCTCCAAAG	.	87.0	25.0	94.0	0.0	.	.	.	.	Atlas-SNP
ZNFX1	57169	hgsc.bcm.edu	hg19	20	47864666	47864666	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	ZNFX1	NM_021035	exon14	c.A4895G	p.Y1632C	GTTCCATACCTCA	.	100.0	25.0	101.0	0.0	.	194	.	.	Atlas-SNP
NPEPL1	79716	hgsc.bcm.edu	hg19	20	57266852	57266852	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	NPEPL1	NM_001204872	exon2	c.A32G	p.Y11C	GAGGGTACCAACC	.	67.0	15.0	55.0	0.0	.	36	.	.	Atlas-SNP
NKAIN4	128414	hgsc.bcm.edu	hg19	20	61880213	61880213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	NKAIN4	NM_152864	exon3	c.A227G	p.N76S	AAGACGTTCCAGG	.	46.0	9.0	38.0	0.0	.	23	.	.	Atlas-SNP
RFPL3	10738	hgsc.bcm.edu	hg19	22	32754310	32754310	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	RFPL3	NM_001098535	exon1	c.C252T	p.V84V	CATGGTCTCTCAG	.	137.0	25.0	119.0	0.0	.	91	.	.	Atlas-SNP
PICK1	9463	hgsc.bcm.edu	hg19	22	38469082	38469082	+	Missense_Mutation	SNP	G	G	A	rs199605777		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	PICK1	NM_012407	exon10	c.G766A	p.V256M	CTGGACGTGAAGT	.	120.0	18.0	110.0	0.0	.	30	.	G|0.999;A|0.001	Atlas-SNP
NAP1L2	4674	hgsc.bcm.edu	hg19	X	72433658	72433658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	NAP1L2	NM_021963	exon1	c.T671C	p.I224T	GCCTCAATGTCGT	.	98.0	14.0	52.0	0.0	.	77	.	.	Atlas-SNP
PIH1D3	139212	hgsc.bcm.edu	hg19	X	106486408	106486408	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	.	NM_173494	exon7	c.G525C	p.L175F	GCTGTTGATAACT	.	131.0	34.0	96.0	0.0	.	.	.	.	Atlas-SNP
COX3	5742	hgsc.bcm.edu	hg19	MT	9510	9510	+	Missense_Mutation	SNP	T	T	C	rs375533744		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	.	ENST00000362079	exon1	c.T304C	p.Y102H	GCCTTTTACCACT	.	15.0	7.0	6.0	0.0	.	.	.	T|0.995;C|0.005	Atlas-SNP
STX12	23673	hgsc.bcm.edu	hg19	1	28099857	28099858	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	STX12,lower_third,carcinoma,0,1	STX12	NM_177424	exon1	c.39_40insC	p.G13fs	.	.	204.0	12.0	209.0	0.0	.	26	.	.	Atlas-INDEL
EVI5	7813	hgsc.bcm.edu	hg19	1	93159906	93159906	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	EVI5	NM_005665	exon8	c.1082delA	p.Q361fs	.	.	182.0	38.0	216.0	0.0	.	94	.	.	Atlas-Indel,Pindel
CEP120	153241	hgsc.bcm.edu	hg19	5	122725745	122725748	+	Frame_Shift_Del	DEL	AGTA	AGTA	-	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	AGTA	AGTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	CEP120	NM_153223	exon9	c.1126_1129del	p.376_377del	.	.	153.0	26.0	142.0	0.0	.	72	.	.	Atlas-Indel,Pindel
DIS3L	115752	hgsc.bcm.edu	hg19	15	66615033	66615052	+	Frame_Shift_Del	DEL	GATGCCAGTAAACACACCAG	GATGCCAGTAAACACACCAG	-	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	GATGCCAGTAAACACACCAG	GATGCCAGTAAACACACCAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	DIS3L_ENST00000319212,NS,carcinoma,0,2	DIS3L	NM_001143688	exon10	c.1334_1353del	p.445_451del	.	.	92.0	10.0	79.0	0.0	.	175	.	.	Atlas-Indel,Pindel
SYT10	341359	hgsc.bcm.edu	hg19	12	33592330	33592330	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	SYT10	NM_198992	exon1	c.129delC	p.G43fs	.	.	53.0	13.0	52.0	0.0	.	109	.	.	Atlas-Indel,Pindel
AGMO	392636	hgsc.bcm.edu	hg19	7	15405237	15405237	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	AGMO	NM_001004320	exon12	c.1166delC	p.A389fs	.	.	104.0	18.0	105.0	0.0	.	98	.	.	Atlas-Indel,Pindel
MUC17	140453	hgsc.bcm.edu	hg19	7	100695190	100695191	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-MI-A75E-01A-11D-A32G-10	TCGA-MI-A75E-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	ea65f8a8-708d-4880-9272-8bbb6f840341	08d2414c-c7d1-47bc-b387-9302d862a298	.	MUC17	NM_001040105	exon9	c.13050_13051insA	p.S4350fs	.	.	114.0	15.0	93.0	0.0	.	804	.	.	Atlas-Indel,Pindel