Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm KIAA2013 90231 hgsc.bcm.edu hg19 1 11985677 11985677 + Silent SNP G G T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . KIAA2013 NM_138346 exon1 c.C618A p.I206I GAGCTGGATGCGC . 85.0 26.0 73.0 0.0 . 25 . . Atlas-SNP TIE1 7075 hgsc.bcm.edu hg19 1 43774664 43774664 + Silent SNP C C T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . TIE1 NM_005424 exon8 c.C1050T p.I350I CCGGATCCCCCAG . 320.0 15.0 203.0 0.0 . 132 . . Atlas-SNP CYP4A11 1579 hgsc.bcm.edu hg19 1 47401258 47401258 + Missense_Mutation SNP A A G novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . CYP4A11 NM_000778 exon5 c.T572C p.L191S GTCATCAAGGAGA . 388.0 158.0 409.0 1.0 . 77 . . Atlas-SNP LMO4 8543 hgsc.bcm.edu hg19 1 87797781 87797781 + Missense_Mutation SNP G G T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . LMO4 NM_006769 exon2 c.G83T p.G28V GCGGGGGCAAGAT . 87.0 43.0 110.0 0.0 . 21 . . Atlas-SNP PHGDH 26227 hgsc.bcm.edu hg19 1 120286648 120286648 + Missense_Mutation SNP C C G novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . PHGDH NM_006623 exon12 c.C1587G p.F529L AGCCTTCCAGTTC . 94.0 40.0 94.0 0.0 . 51 . . Atlas-SNP NBPF10 100132406 hgsc.bcm.edu hg19 1 145304611 145304611 + Missense_Mutation SNP C C T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . NBPF10 NM_001039703 exon10 c.C1544T p.S515F GCTCATCCTCTCA . 462.0 75.0 194.0 0.0 . 221 . . Atlas-SNP CD1A 909 hgsc.bcm.edu hg19 1 158225110 158225110 + Missense_Mutation SNP C C G novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 CD1A,right_lower_lobe,carcinoma,0,1 CD1A NM_001763 exon2 c.C295G p.R99G GGAATTCGTAGAT . 141.0 34.0 77.0 0.0 . 88 . . Atlas-SNP OR10Z1 128368 hgsc.bcm.edu hg19 1 158576910 158576910 + Missense_Mutation SNP A A G novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . OR10Z1 NM_001004478 exon1 c.A682G p.I228V CTGAGGATCCCCT . 112.0 36.0 56.0 0.0 . 99 . . Atlas-SNP CACNA1E 777 hgsc.bcm.edu hg19 1 181724436 181724436 + Missense_Mutation SNP C C G novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . CACNA1E NM_001205293 exon28 c.C3892G p.L1298V TACAAGCTCTTCA . 111.0 33.0 54.0 0.0 . 778 . . Atlas-SNP ELK4 2005 hgsc.bcm.edu hg19 1 205589082 205589082 + Silent SNP C C A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 ELK4_ENST00000289703,colon,carcinoma,0,1 ELK4 NM_021795 exon3 c.G1092T p.S364S AAAGAGCGAGCAA . 143.0 42.0 93.0 0.0 . 45 . . Atlas-SNP SLC26A9 115019 hgsc.bcm.edu hg19 1 205886474 205886474 + Silent SNP C C A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . SLC26A9 NM_134325 exon20 c.G2265T p.G755G AGCATCCCCTGGA . 74.0 23.0 70.0 0.0 . 176 . . Atlas-SNP PLXNA2 5362 hgsc.bcm.edu hg19 1 208257756 208257756 + Missense_Mutation SNP T T C novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . PLXNA2 NM_025179 exon10 c.A2267G p.N756S GAGCTGTTGAAGC . 103.0 59.0 90.0 0.0 . 178 . . Atlas-SNP RPS6KC1 26750 hgsc.bcm.edu hg19 1 213403855 213403855 + Missense_Mutation SNP G G A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . RPS6KC1 NM_012424 exon9 c.G1060A p.D354N GTAATGGACACAA . 122.0 29.0 82.0 0.0 . 114 . . Atlas-SNP USH2A 7399 hgsc.bcm.edu hg19 1 216420308 216420308 + Missense_Mutation SNP C C A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . USH2A NM_007123 exon13 c.G2428T p.A810S TCTTAGCATTACA . 224.0 73.0 127.0 0.0 . 1168 . . Atlas-SNP OR2T4 127074 hgsc.bcm.edu hg19 1 248524962 248524962 + Missense_Mutation SNP A A C novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . OR2T4 NM_001004696 exon1 c.A80C p.H27P CCAAACATCCAAT . 361.0 91.0 253.0 0.0 . 126 . . Atlas-SNP KIAA1841 84542 hgsc.bcm.edu hg19 2 61297534 61297534 + Missense_Mutation SNP C C G novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . KIAA1841 NM_032506 exon3 c.C49G p.Q17E AATAACCAAATGG . 98.0 40.0 93.0 0.0 . 95 . . Atlas-SNP APLF 200558 hgsc.bcm.edu hg19 2 68753315 68753315 + Missense_Mutation SNP C C A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . APLF NM_173545 exon6 c.C745A p.Q249K GCAGAACAAGACA . 273.0 137.0 250.0 0.0 . 69 . . Atlas-SNP ITGA4 3676 hgsc.bcm.edu hg19 2 182388920 182388920 + Missense_Mutation SNP A A T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . ITGA4 NM_000885 exon20 c.A2192T p.D731V TCCTGGATGTGAG . 141.0 54.0 165.0 0.0 . 142 . . Atlas-SNP FAM171B 165215 hgsc.bcm.edu hg19 2 187626928 187626928 + Nonsense_Mutation SNP G G A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . FAM171B NM_177454 exon8 c.G1859A p.W620X CAGATTGGAGCCG . 93.0 35.0 86.0 0.0 . 146 . . Atlas-SNP RAPH1 65059 hgsc.bcm.edu hg19 2 204354655 204354655 + Missense_Mutation SNP C C A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . RAPH1 NM_213589 exon4 c.G384T p.L128F ATGTTTCAATGTA . 118.0 49.0 119.0 0.0 . 118 . . Atlas-SNP UGT1A9 54600 hgsc.bcm.edu hg19 2 234580748 234580748 + Silent SNP T T C novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 UGT1A9,NS,carcinoma,0,1 UGT1A9 NM_021027 exon1 c.T168C p.V56V GGTGGTTGTAGTC . 73.0 29.0 79.0 0.0 . 79 . . Atlas-SNP OXTR 5021 hgsc.bcm.edu hg19 3 8794828 8794828 + Silent SNP G G A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . OXTR NM_000916 exon4 c.C1005T p.H335H GAAGAGGTGGCCC . 117.0 45.0 126.0 0.0 . 31 . . Atlas-SNP DLEC1 9940 hgsc.bcm.edu hg19 3 38080872 38080872 + Silent SNP T T A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . DLEC1 NM_007337 exon1 c.T156A p.S52S CTACTCTGAGGCC . 130.0 53.0 157.0 0.0 . 278 . . Atlas-SNP MST1 4485 hgsc.bcm.edu hg19 3 49725184 49725184 + Missense_Mutation SNP G G A rs191996618 bycluster TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 MST1,trunk,malignant_melanoma,0,1 MST1 NM_020998 exon2 c.C241T p.R81W CTCACCGGCAGTC . 73.0 5.0 93.0 2.0 . 84 . . Atlas-SNP EPHA3 2042 hgsc.bcm.edu hg19 3 89480381 89480381 + Missense_Mutation SNP A A T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . EPHA3 NM_005233 exon13 c.A2218T p.M740L TCAGACATGGGCT . 106.0 43.0 91.0 0.0 . 501 . . Atlas-SNP FAM162A 26355 hgsc.bcm.edu hg19 3 122126169 122126169 + Missense_Mutation SNP A A C novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . FAM162A NM_014367 exon4 c.A305C p.K102T GAGTGAAGATCAG . 66.0 27.0 68.0 0.0 . 18 . . Atlas-SNP PLXNA1 5361 hgsc.bcm.edu hg19 3 126726661 126726661 + Missense_Mutation SNP G G T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . PLXNA1 NM_032242 exon8 c.G2017T p.G673C GTCAACGGCTCCT . 27.0 20.0 42.0 0.0 . 185 . . Atlas-SNP TBC1D1 23216 hgsc.bcm.edu hg19 4 38138875 38138875 + Silent SNP G G A rs375379532 TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . TBC1D1 NM_015173 exon20 c.G3426A p.T1142T GCAGACGGTGGAG . 138.0 44.0 109.0 0.0 . 94 . . Atlas-SNP PHOX2B 8929 hgsc.bcm.edu hg19 4 41748004 41748004 + Silent SNP C C T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . PHOX2B NM_003924 exon3 c.G765A p.A255A CGCTGCCGCTGCC . 141.0 69.0 99.0 0.0 . 53 . . Atlas-SNP FRAS1 80144 hgsc.bcm.edu hg19 4 79350344 79350344 + Silent SNP C C A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . FRAS1 NM_001166133 exon36 c.C4807A p.R1603R GCTCCACGGCTGG . 53.0 22.0 50.0 0.0 . 779 . . Atlas-SNP FRAS1 80144 hgsc.bcm.edu hg19 4 79432632 79432632 + Missense_Mutation SNP G G A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 FRAS1_ENST00000264895,NS,carcinoma,0,2 FRAS1 NM_025074 exon64 c.G9985A p.D3329N TACCTGGATGTCA . 118.0 51.0 107.0 0.0 . 779 . . Atlas-SNP QRFPR 84109 hgsc.bcm.edu hg19 4 122250606 122250606 + Missense_Mutation SNP T T C novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . QRFPR NM_198179 exon6 c.A1159G p.K387E CTCCTTTGGTTTC . 123.0 55.0 107.0 0.0 . 65 . . Atlas-SNP KIAA1109 84162 hgsc.bcm.edu hg19 4 123179983 123179983 + Silent SNP T T C novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . KIAA1109 NM_015312 exon40 c.T6747C p.S2249S TGACTCTGCATTA . 75.0 26.0 81.0 0.0 . 424 . . Atlas-SNP ADAMTS16 170690 hgsc.bcm.edu hg19 5 5235288 5235288 + Missense_Mutation SNP C C G novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . ADAMTS16 NM_139056 exon13 c.C2012G p.T671S CTTACACTCAAGT . 108.0 52.0 111.0 0.0 . 543 . . Atlas-SNP CDH10 1008 hgsc.bcm.edu hg19 5 24537662 24537662 + Missense_Mutation SNP T T A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . CDH10 NM_006727 exon3 c.A353T p.D118V TCCCTATCAATTC . 84.0 46.0 92.0 0.0 . 391 . . Atlas-SNP CMYA5 202333 hgsc.bcm.edu hg19 5 79032250 79032250 + Missense_Mutation SNP G G T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . CMYA5 NM_153610 exon2 c.G7662T p.Q2554H GAAGCAGCAGGAA . 98.0 35.0 86.0 0.0 . 643 . . Atlas-SNP CTNNA1 1495 hgsc.bcm.edu hg19 5 138260300 138260300 + Missense_Mutation SNP G G T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . CTNNA1 NM_001903 exon12 c.G1648T p.A550S CGGGCAGCCCGGG . 113.0 55.0 153.0 0.0 . 114 . . Atlas-SNP PCDHA6 56142 hgsc.bcm.edu hg19 5 140208117 140208117 + Silent SNP G G A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . PCDHA6 NM_018909 exon1 c.G441A p.L147L TAGGCTGCCAGAT . 129.0 63.0 148.0 0.0 . 442 . . Atlas-SNP GABRG2 2566 hgsc.bcm.edu hg19 5 161576316 161576316 + Missense_Mutation SNP C C G novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . GABRG2 NM_198903 exon9 c.C1245G p.N415K GAAAAACCCTGTA . 72.0 28.0 52.0 0.0 . 142 . . Atlas-SNP RANBP17 64901 hgsc.bcm.edu hg19 5 170319441 170319441 + Missense_Mutation SNP G G T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . RANBP17 NM_022897 exon4 c.G307T p.V103F CCCTTTGTCATCC . 110.0 51.0 124.0 0.0 . 108 . . Atlas-SNP SCUBE3 222663 hgsc.bcm.edu hg19 6 35211877 35211877 + Missense_Mutation SNP G G A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . SCUBE3 NM_152753 exon17 c.G2209A p.A737T GAAGGGGCCATTT . 69.0 31.0 79.0 0.0 . 99 . . Atlas-SNP MOCS1 4337 hgsc.bcm.edu hg19 6 39876849 39876849 + Missense_Mutation SNP G G A rs149586823 bycluster;alternate_allele TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 MOCS1_ENST00000340692,NS,carcinoma,0,2 MOCS1 NM_005943 exon9 c.C1132T p.R378W TGGGCCGGTTCTT . 63.0 36.0 74.0 0.0 . 87 . G|1.000;C|0.000 Atlas-SNP PHIP 55023 hgsc.bcm.edu hg19 6 79692616 79692616 + Missense_Mutation SNP T T A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . PHIP NM_017934 exon23 c.A2756T p.E919V TTTCTTTCTTTGG . 18.0 10.0 19.0 0.0 . 177 . . Atlas-SNP PHIP 55023 hgsc.bcm.edu hg19 6 79727210 79727210 + Missense_Mutation SNP T T A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . PHIP NM_017934 exon11 c.A1085T p.E362V TGAAACTCCAATT . 236.0 96.0 218.0 0.0 . 177 . . Atlas-SNP TWISTNB 221830 hgsc.bcm.edu hg19 7 19748398 19748398 + Missense_Mutation SNP C C T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . TWISTNB NM_001002926 exon1 c.G242A p.R81H GAATAGCGAAGGA . 56.0 31.0 48.0 0.0 . 63 . . Atlas-SNP ABCB5 340273 hgsc.bcm.edu hg19 7 20698196 20698196 + Missense_Mutation SNP T T G novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 ABCB5_ENST00000443026,NS,carcinoma,0,3 ABCB5 NM_001163941 exon14 c.T1604G p.I535S TCGCAATTGCTCG . 67.0 30.0 66.0 0.0 . 357 . . Atlas-SNP TBX20 57057 hgsc.bcm.edu hg19 7 35242082 35242082 + Missense_Mutation SNP C C T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 TBX20_ENST00000408931,colon,carcinoma,0,1 TBX20 NM_001077653 exon8 c.G1304A p.G435E CGTAGTCCTTGAA . 160.0 53.0 123.0 1.0 . 96 . . Atlas-SNP NACAD 23148 hgsc.bcm.edu hg19 7 45122346 45122346 + Missense_Mutation SNP T T C novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . NACAD NM_001146334 exon2 c.A3433G p.T1145A CCTCTGTGGCCAC . 82.0 28.0 82.0 0.0 . 44 . . Atlas-SNP ASL 435 hgsc.bcm.edu hg19 7 65557597 65557597 + Missense_Mutation SNP G G T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . ASL NM_000048 exon16 c.G1197T p.E399D GGCCGAGACCAAG . 54.0 25.0 59.0 0.0 . 39 . . Atlas-SNP PODXL 5420 hgsc.bcm.edu hg19 7 131241029 131241029 + Silent SNP G G C novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . PODXL NM_001018111 exon1 c.C90G p.P30P CTGGGAGGGCGAC . 76.0 7.0 78.0 0.0 . 53 . . Atlas-SNP KIAA1549 57670 hgsc.bcm.edu hg19 7 138552730 138552730 + Silent SNP G G A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . KIAA1549 NM_020910 exon15 c.C4920T p.I1640I GCATCCGATGTAG . 41.0 21.0 44.0 0.0 . 314 . . Atlas-SNP C7orf33 202865 hgsc.bcm.edu hg19 7 148288121 148288121 + Missense_Mutation SNP G G A rs142396932 TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . C7orf33 NM_145304 exon1 c.G104A p.R35Q GGCGCCGGATTGA . 91.0 35.0 114.0 0.0 . 28 . G|1.000;A|0.000 Atlas-SNP PREX2 80243 hgsc.bcm.edu hg19 8 69032459 69032459 + Missense_Mutation SNP G G C novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 PREX2,NS,neuroblastoma,0,1 PREX2 NM_024870 exon29 c.G3533C p.G1178A TAAAAGGGCAGGC . 75.0 37.0 96.0 0.0 . 614 . . Atlas-SNP CNGB3 54714 hgsc.bcm.edu hg19 8 87616352 87616352 + Missense_Mutation SNP G G T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . CNGB3 NM_019098 exon15 c.C1750A p.L584M CTTTCAGAGTAAC . 75.0 33.0 86.0 0.0 . 176 . . Atlas-SNP PKHD1L1 93035 hgsc.bcm.edu hg19 8 110417293 110417293 + Missense_Mutation SNP C C A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . PKHD1L1 NM_177531 exon16 c.C1603A p.P535T ACCAGCCCATGTG . 134.0 37.0 203.0 0.0 . 522 . . Atlas-SNP PKHD1L1 93035 hgsc.bcm.edu hg19 8 110417294 110417294 + Missense_Mutation SNP C C A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 PKHD1L1,NS,carcinoma,0,1 PKHD1L1 NM_177531 exon16 c.C1604A p.P535Q CCAGCCCATGTGT . 134.0 38.0 204.0 0.0 . 522 . . Atlas-SNP AARD 441376 hgsc.bcm.edu hg19 8 117954838 117954838 + Missense_Mutation SNP A A C novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . . NM_001025357 exon2 c.A366C p.L122F AACTTTACTGGAC . 54.0 33.0 95.0 0.0 . . . . Atlas-SNP DENND3 22898 hgsc.bcm.edu hg19 8 142166010 142166010 + Silent SNP G G T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . DENND3 NM_014957 exon8 c.G897T p.T299T GTCCACGGACGAT . 60.0 32.0 65.0 0.0 . 127 . . Atlas-SNP GRIN3A 116443 hgsc.bcm.edu hg19 9 104449360 104449360 + Nonsense_Mutation SNP C C T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . GRIN3A NM_133445 exon2 c.G822A p.W274X GATGTTCCAGTCT . 149.0 7.0 135.0 0.0 . 186 . . Atlas-SNP CYLC2 1539 hgsc.bcm.edu hg19 9 105767953 105767953 + Missense_Mutation SNP G G A rs373184793 TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . CYLC2 NM_001340 exon5 c.G1040A p.G347D AGAAGGGCAAGTA . 220.0 96.0 251.0 0.0 . 109 . . Atlas-SNP GATA3 2625 hgsc.bcm.edu hg19 10 8106075 8106075 + Missense_Mutation SNP C C A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . GATA3 NM_001002295 exon4 c.C898A p.P300T AACCGGCCCCTCA . 103.0 43.0 139.0 0.0 . 182 . . Atlas-SNP CHST3 9469 hgsc.bcm.edu hg19 10 73767585 73767585 + Missense_Mutation SNP C C G novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . CHST3 NM_004273 exon3 c.C796G p.R266G TGCCGCCGCAAGG . 43.0 28.0 38.0 0.0 . 36 . . Atlas-SNP OPN4 94233 hgsc.bcm.edu hg19 10 88417835 88417835 + Missense_Mutation SNP G G A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . OPN4 NM_001030015 exon4 c.G370A p.A124T AACCTCGCGGTCA . 70.0 33.0 63.0 0.0 . 61 . . Atlas-SNP PDZD7 79955 hgsc.bcm.edu hg19 10 102770299 102770299 + Missense_Mutation SNP G G A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . PDZD7 NM_001195263 exon15 c.C2347T p.R783C TGCTGCGGCTGCG . 339.0 84.0 287.0 0.0 . 101 . . Atlas-SNP JAKMIP3 282973 hgsc.bcm.edu hg19 10 133930963 133930963 + Missense_Mutation SNP C C T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . JAKMIP3 NM_001105521 exon2 c.C518T p.T173M CGCTGACGCTGGT . 101.0 53.0 88.0 0.0 . 69 . . Atlas-SNP INSC 387755 hgsc.bcm.edu hg19 11 15243031 15243031 + Silent SNP C C T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . INSC NM_001031853 exon8 c.C969T p.G323G GGATGGCGTTCTG . 165.0 65.0 135.0 0.0 . 104 . . Atlas-SNP MS4A15 219995 hgsc.bcm.edu hg19 11 60541328 60541328 + Missense_Mutation SNP C C A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . MS4A15 NM_001098835 exon6 c.C517A p.L173M GGCTATCTGGCCG . 69.0 30.0 45.0 0.0 . 37 . . Atlas-SNP CD6 923 hgsc.bcm.edu hg19 11 60785356 60785356 + Nonsense_Mutation SNP G G T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . CD6 NM_006725 exon11 c.G1708T p.E570X TCAGGGGAGGATT . 112.0 57.0 113.0 0.0 . 122 . . Atlas-SNP HEPHL1 341208 hgsc.bcm.edu hg19 11 93839186 93839186 + Missense_Mutation SNP C C G novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . HEPHL1 NM_001098672 exon17 c.C2935G p.H979D AATCTCCATGGCC . 152.0 57.0 135.0 0.0 . 144 . . Atlas-SNP OR8B8 26493 hgsc.bcm.edu hg19 11 124310418 124310418 + Silent SNP A A G novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . OR8B8 NM_012378 exon1 c.T564C p.A188A GGTGCAAGCACAC . 137.0 66.0 134.0 0.0 . 76 . . Atlas-SNP IGSF9B 22997 hgsc.bcm.edu hg19 11 133801020 133801020 + Missense_Mutation SNP G G T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . IGSF9B NM_014987 exon11 c.C1378A p.P460T TGCTGGGCTTCCC . 66.0 4.0 64.0 0.0 . 290 . . Atlas-SNP SLCO1C1 53919 hgsc.bcm.edu hg19 12 20903660 20903660 + Missense_Mutation SNP T T C novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . SLCO1C1 NM_017435 exon14 c.T1850C p.L617P CATGCCTCAAATG . 144.0 72.0 149.0 0.0 . 216 . . Atlas-SNP C2CD5 9847 hgsc.bcm.edu hg19 12 22697019 22697019 + Missense_Mutation SNP A A C novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . . NM_014802 exon2 c.T66G p.S22R CAGGTCACTAGCA . 76.0 34.0 65.0 0.0 . . . . Atlas-SNP KRT6A 3853 hgsc.bcm.edu hg19 12 52884732 52884732 + Silent SNP C C T rs368725695 alternate_allele TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . KRT6A NM_005554 exon4 c.G822A p.V274V AGCATCCACATCC . 147.0 55.0 129.0 0.0 . 89 . . Atlas-SNP KRT78 196374 hgsc.bcm.edu hg19 12 53238491 53238491 + Missense_Mutation SNP T T G novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . KRT78 NM_173352 exon5 c.A773C p.Q258P TGGGTCTGGAGCT . 29.0 16.0 30.0 0.0 . 41 . . Atlas-SNP APAF1 317 hgsc.bcm.edu hg19 12 99121087 99121087 + Missense_Mutation SNP A A G novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . APAF1 NM_181861 exon26 c.A3593G p.Y1198C GAGGATATATTAA . 31.0 14.0 46.0 0.0 . 111 . . Atlas-SNP HNF1A 6927 hgsc.bcm.edu hg19 12 121437070 121437070 + Splice_Site SNP G G A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . HNF1A NM_000545 exon8 c.1502-1G>A . CGGCCAGCCCTCT . 103.0 43.0 118.0 0.0 . 302 . . Atlas-SNP TRPC4 7223 hgsc.bcm.edu hg19 13 38320590 38320590 + Silent SNP C C T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . TRPC4 NM_003306 exon3 c.G381A p.V127V AGGAGGCACCTAA . 37.0 26.0 49.0 0.0 . 389 . . Atlas-SNP TBC1D4 9882 hgsc.bcm.edu hg19 13 76055872 76055872 + Missense_Mutation SNP G G C novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . TBC1D4 NM_014832 exon1 c.C32G p.P11R GGGAACGGCTCAT . 58.0 49.0 96.0 0.0 . 142 . . Atlas-SNP GPC6 10082 hgsc.bcm.edu hg19 13 95055461 95055461 + Missense_Mutation SNP T T A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . GPC6 NM_005708 exon9 c.T1658A p.L553Q AGAGACTGTGCAG . 34.0 31.0 31.0 0.0 . 102 . . Atlas-SNP ARHGEF40 55701 hgsc.bcm.edu hg19 14 21555482 21555482 + Missense_Mutation SNP C C T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . ARHGEF40 NM_018071 exon21 c.C4247T p.A1416V CAGCCGCCCGCAC . 72.0 26.0 44.0 0.0 . 84 . . Atlas-SNP PRMT5 10419 hgsc.bcm.edu hg19 14 23398484 23398484 + Silent SNP T T A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . PRMT5 NM_006109 exon1 c.A87T p.T29T CCCTAGTGTGTCA . 45.0 19.0 36.0 0.0 . 101 . . Atlas-SNP DCAF11 80344 hgsc.bcm.edu hg19 14 24590150 24590150 + Missense_Mutation SNP C C A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . . NM_025230 exon12 c.C1196A p.A399D GCCAGGCTGCCAC . 164.0 88.0 113.0 0.0 . . . . Atlas-SNP RTN1 6252 hgsc.bcm.edu hg19 14 60212828 60212828 + Missense_Mutation SNP C C A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . RTN1 NM_021136 exon2 c.G613T p.V205L GCTTCACCTCCTC . 92.0 13.0 106.0 0.0 . 139 . . Atlas-SNP PCNX 22990 hgsc.bcm.edu hg19 14 71524347 71524347 + Silent SNP C C T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . PCNX NM_014982 exon26 c.C4758T p.F1586F CTGTTTCATCCTT . 73.0 28.0 91.0 0.0 . 198 . . Atlas-SNP NEK9 91754 hgsc.bcm.edu hg19 14 75593444 75593444 + Missense_Mutation SNP C C A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . NEK9 NM_033116 exon1 c.G181T p.G61C AGGCGCCGCGGCC . 180.0 83.0 160.0 0.0 . 64 . . Atlas-SNP HSP90AA1 3320 hgsc.bcm.edu hg19 14 102552710 102552710 + Silent SNP A A T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . HSP90AA1 NM_001017963 exon3 c.T372A p.P124P TTCCTCAGGCATC . 95.0 32.0 124.0 0.0 . 65 . . Atlas-SNP INF2 64423 hgsc.bcm.edu hg19 14 105180840 105180840 + Missense_Mutation SNP T T A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . INF2 NM_022489 exon21 c.T3341A p.L1114H AGCCCCTCAAGTT . 75.0 32.0 50.0 0.0 . 148 . . Atlas-SNP NIPA1 123606 hgsc.bcm.edu hg19 15 23049159 23049159 + Silent SNP G G A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . NIPA1 NM_144599 exon5 c.C660T p.N220N GGACGGGTTGTTA . 73.0 30.0 95.0 0.0 . 26 . . Atlas-SNP AQR 9716 hgsc.bcm.edu hg19 15 35196558 35196558 + Silent SNP T T C novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . AQR NM_014691 exon19 c.A1980G p.K660K CTTTGGTTTTCTC . 96.0 41.0 65.0 0.0 . 139 . . Atlas-SNP MYO1E 4643 hgsc.bcm.edu hg19 15 59480390 59480390 + Missense_Mutation SNP C C T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . MYO1E NM_004998 exon18 c.G1831A p.G611S TCAGACCCAAATA . 46.0 25.0 46.0 0.0 . 99 . . Atlas-SNP SEMA7A 8482 hgsc.bcm.edu hg19 15 74704300 74704300 + Missense_Mutation SNP C C T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . SEMA7A NM_003612 exon11 c.G1348A p.A450T TGAAGGCGAAGCT . 77.0 15.0 56.0 0.0 . 58 . . Atlas-SNP ZNF774 342132 hgsc.bcm.edu hg19 15 90903908 90903908 + Missense_Mutation SNP A A G novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . ZNF774 NM_001004309 exon4 c.A845G p.Q282R CTCACCAGAGGAC . 61.0 19.0 84.0 0.0 . 35 . . Atlas-SNP SHISA9 729993 hgsc.bcm.edu hg19 16 12996468 12996468 + Missense_Mutation SNP A A T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . SHISA9 NM_001145204 exon1 c.A547T p.R183W CCCCAAAGGGAGC . 59.0 21.0 35.0 0.0 . 33 . . Atlas-SNP ABCC11 85320 hgsc.bcm.edu hg19 16 48232119 48232119 + Missense_Mutation SNP C C T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . ABCC11 NM_033151 exon15 c.G2150A p.S717N AACTCACTGTGAG . 126.0 57.0 138.0 0.0 . 177 . . Atlas-SNP NFAT5 10725 hgsc.bcm.edu hg19 16 69727754 69727754 + Silent SNP C C T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 NFAT5_ENST00000432919,NS,carcinoma,0,2 NFAT5 NM_138713 exon13 c.C4026T p.P1342P ACAGCCCATGCAA . 71.0 57.0 127.0 0.0 . 184 . . Atlas-SNP ZNF232 7775 hgsc.bcm.edu hg19 17 5013065 5013065 + Missense_Mutation SNP T T C novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . ZNF232 NM_014519 exon3 c.A122G p.Q41R GTACCCTGAAGGG . 42.0 31.0 73.0 0.0 . 42 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7578239 7578239 + Nonsense_Mutation SNP C C A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 TP53_ENST00000545858,NS,carcinoma,+2,65 TP53 NM_000546 exon6 c.G610T p.E204X AATACTCCACACG . 61.0 50.0 147.0 0.0 . 33396 . . Atlas-SNP C17orf66 256957 hgsc.bcm.edu hg19 17 34183788 34183788 + Nonsense_Mutation SNP G G A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . C17orf66 NM_152781 exon12 c.C1174T p.Q392X CAGTTTGAGCCAC . 40.0 15.0 30.0 0.0 . 57 . . Atlas-SNP PIGW 284098 hgsc.bcm.edu hg19 17 34893593 34893593 + Missense_Mutation SNP G G A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . PIGW NM_178517 exon2 c.G643A p.G215R GGAATCGGACGAT . 187.0 53.0 132.0 0.0 . 50 . . Atlas-SNP SYNRG 11276 hgsc.bcm.edu hg19 17 35945538 35945538 + Silent SNP C C T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . SYNRG NM_001163544 exon5 c.G372A p.Q124Q TCGTTTCCTGAAG . 42.0 14.0 31.0 0.0 . 101 . . Atlas-SNP ATP6V0A1 535 hgsc.bcm.edu hg19 17 40620123 40620123 + Missense_Mutation SNP G G A rs370052932 TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . ATP6V0A1 NM_001130020 exon4 c.G292A p.E98K GACTTAGAGGTAA . 313.0 203.0 241.0 0.0 . 67 . . Atlas-SNP EFTUD2 9343 hgsc.bcm.edu hg19 17 42937333 42937333 + Silent SNP C C T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . EFTUD2 NM_004247 exon18 c.G1800A p.L600L CTTGGGCAGCTCT . 173.0 56.0 132.0 0.0 . 85 . . Atlas-SNP PNPO 55163 hgsc.bcm.edu hg19 17 46023698 46023698 + Missense_Mutation SNP A A C novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . PNPO NM_018129 exon6 c.A556C p.K186Q CTGAGAAAGAAAA . 111.0 37.0 90.0 0.0 . 18 . . Atlas-SNP HOXB5 3215 hgsc.bcm.edu hg19 17 46670490 46670490 + Silent SNP G G A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . HOXB5 NM_002147 exon1 c.C555T p.I185I ATGGCTGATGTGA . 117.0 74.0 45.0 0.0 . 20 . . Atlas-SNP ITGA3 3675 hgsc.bcm.edu hg19 17 48148229 48148229 + Missense_Mutation SNP G G A rs140829923 TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 ITGA3,colon,carcinoma,0,1 ITGA3 NM_005501 exon5 c.G686A p.R229H TTCAGCGCAAGGA . 217.0 60.0 125.0 0.0 . 128 . G|1.000;A|0.000 Atlas-SNP CD300LB 124599 hgsc.bcm.edu hg19 17 72518959 72518959 + Missense_Mutation SNP G G A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . CD300LB NM_174892 exon4 c.C635T p.S212F CTCTGAGACCCCT . 107.0 47.0 97.0 0.0 . 38 . . Atlas-SNP SLC25A10 1468 hgsc.bcm.edu hg19 17 79682599 79682599 + Missense_Mutation SNP A A T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . SLC25A10 NM_001270888 exon3 c.A305T p.K102M ACGAGAAGGTGTT . 83.0 32.0 77.0 0.0 . 24 . . Atlas-SNP DCXR 51181 hgsc.bcm.edu hg19 17 79993869 79993869 + Silent SNP A A C novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . DCXR NM_016286 exon8 c.T702G p.T234T CGGCAAAGTGGAA . 64.0 34.0 59.0 0.0 . 10 . . Atlas-SNP ZNF521 25925 hgsc.bcm.edu hg19 18 22807356 22807356 + Missense_Mutation SNP A A G novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . ZNF521 NM_015461 exon4 c.T526C p.C176R CACTGCAGTGGTA . 123.0 57.0 128.0 0.0 . 269 . . Atlas-SNP TAF4B 6875 hgsc.bcm.edu hg19 18 23866000 23866000 + Missense_Mutation SNP C C A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . TAF4B NM_005640 exon7 c.C1127A p.S376Y GCCAGTCTGAAAA . 79.0 33.0 91.0 0.0 . 71 . . Atlas-SNP LOXHD1 125336 hgsc.bcm.edu hg19 18 44057756 44057756 + Silent SNP C C T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . LOXHD1 NM_144612 exon40 c.G6315A p.G2105G GCCTGCCCCTGGC . 52.0 23.0 72.0 0.0 . 367 . . Atlas-SNP ZNF407 55628 hgsc.bcm.edu hg19 18 72346892 72346892 + Missense_Mutation SNP A A T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . ZNF407 NM_001146190 exon1 c.A3917T p.K1306M GGAATAAGGAAAT . 100.0 4.0 85.0 0.0 . 231 . . Atlas-SNP AP3D1 8943 hgsc.bcm.edu hg19 19 2137788 2137788 + Missense_Mutation SNP C C T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . AP3D1 NM_001261826 exon3 c.G211A p.D71N TGATGTCGTATCC . 136.0 37.0 86.0 0.0 . 81 . . Atlas-SNP DPP9 91039 hgsc.bcm.edu hg19 19 4704012 4704012 + Missense_Mutation SNP C C G novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . DPP9 NM_139159 exon7 c.G655C p.D219H TGGGGTCCATCCG . 69.0 23.0 71.0 0.0 . 59 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9064481 9064481 + Missense_Mutation SNP C C A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . MUC16 NM_024690 exon3 c.G22965T p.Q7655H AAATCCCTGAATT . 112.0 33.0 97.0 0.0 . 4315 . . Atlas-SNP NOTCH3 4854 hgsc.bcm.edu hg19 19 15302777 15302777 + Missense_Mutation SNP G G A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . NOTCH3 NM_000435 exon4 c.C673T p.L225F CAGGAAGACAGGC . 54.0 27.0 43.0 0.0 . 340 . . Atlas-SNP DMKN 93099 hgsc.bcm.edu hg19 19 36003635 36003635 + Nonsense_Mutation SNP G G A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . DMKN NM_001190347 exon2 c.C484T p.Q162X TGCCCTGGCCCTG . 41.0 19.0 42.0 0.0 . 116 . . Atlas-SNP RBM42 79171 hgsc.bcm.edu hg19 19 36120568 36120568 + Missense_Mutation SNP A A G novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . RBM42 NM_024321 exon2 c.A275G p.Y92C ACACATACCAGCA . 51.0 25.0 61.0 0.0 . 40 . . Atlas-SNP PLD3 23646 hgsc.bcm.edu hg19 19 40882529 40882529 + Missense_Mutation SNP A A G novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . PLD3 NM_012268 exon11 c.A1033G p.I345V CCTGCCATTGACG . 26.0 9.0 24.0 0.0 . 71 . . Atlas-SNP NPAS1 4861 hgsc.bcm.edu hg19 19 47548495 47548495 + Missense_Mutation SNP C C A rs147026903 alternate_allele TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . NPAS1 NM_002517 exon11 c.C1359A p.N453K GGAGAACGAGGCC . 150.0 32.0 131.0 0.0 . 32 . C|1.000;G|0.000 Atlas-SNP DHX34 9704 hgsc.bcm.edu hg19 19 47865878 47865878 + Silent SNP G G T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . DHX34 NM_014681 exon6 c.G1521T p.S507S CGAATCGGACTAT . 110.0 53.0 108.0 0.0 . 98 . . Atlas-SNP ZIM3 114026 hgsc.bcm.edu hg19 19 57646441 57646441 + Missense_Mutation SNP T T C novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . ZIM3 NM_052882 exon5 c.A1264G p.S422G ATTCACTACATCT . 78.0 40.0 89.0 0.0 . 107 . . Atlas-SNP SEL1L2 80343 hgsc.bcm.edu hg19 20 13894546 13894546 + Missense_Mutation SNP T T G novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . SEL1L2 NM_001271539 exon5 c.A431C p.K144T ATAGCTTTCAAGT . 91.0 32.0 106.0 0.0 . 103 . . Atlas-SNP OCSTAMP 128506 hgsc.bcm.edu hg19 20 45170059 45170059 + Missense_Mutation SNP C C T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . OCSTAMP NM_080721 exon3 c.G1555A p.V519M AGGTCACACAGGG . 135.0 21.0 125.0 0.0 . 34 . . Atlas-SNP TRPM2 7226 hgsc.bcm.edu hg19 21 45819301 45819301 + Missense_Mutation SNP T T C novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . TRPM2 NM_003307 exon14 c.T2185C p.F729L ATGAAGTTTGTGT . 89.0 35.0 80.0 0.0 . 196 . . Atlas-SNP THOC5 8563 hgsc.bcm.edu hg19 22 29913322 29913322 + Missense_Mutation SNP T T C novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . THOC5 NM_001002878 exon17 c.A1523G p.Q508R AGGTACTGGCAAT . 102.0 49.0 125.0 0.0 . 58 . . Atlas-SNP TTC38 55020 hgsc.bcm.edu hg19 22 46685390 46685390 + Missense_Mutation SNP G G T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . TTC38 NM_017931 exon12 c.G1174T p.D392Y AACCCTGACCGCG . 59.0 29.0 72.0 0.0 . 40 . . Atlas-SNP DCAF8L2 347442 hgsc.bcm.edu hg19 X 27765423 27765423 + Silent SNP G G A novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . DCAF8L2 NM_001136533 exon1 c.G411A p.E137E GGAGGAGGAGGAG . 47.0 33.0 11.0 0.0 . 79 . . Atlas-SNP BMP15 9210 hgsc.bcm.edu hg19 X 50658936 50658936 + Missense_Mutation SNP G G T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . BMP15 NM_005448 exon2 c.G508T p.D170Y GAAGGAGATTCCT . 254.0 118.0 298.0 0.0 . 62 . . Atlas-SNP FOXR2 139628 hgsc.bcm.edu hg19 X 55650548 55650548 + Missense_Mutation SNP C C T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . FOXR2 NM_198451 exon1 c.C404T p.S135F CTTCCTCCAGTGA . 134.0 72.0 134.0 0.0 . 42 . . Atlas-SNP DACH2 117154 hgsc.bcm.edu hg19 X 86069740 86069740 + Missense_Mutation SNP G G T novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . DACH2 NM_053281 exon10 c.G1587T p.L529F AAAATTGCAGGAA . 136.0 17.0 115.0 0.0 . 263 . . Atlas-SNP DLX5 1749 hgsc.bcm.edu hg19 7 96653687 96653687 + Frame_Shift_Del DEL G G - novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . DLX5 NM_005221 exon1 c.250delG p.A84fs . . 112.0 50.0 95.0 0.0 . 52 . . Atlas-INDEL SLC9A1 6548 hgsc.bcm.edu hg19 1 27429729 27429732 + Frame_Shift_Del DEL TTCG TTCG - novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 TTCG TTCG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . SLC9A1 NM_003047 exon6 c.1558_1561del p.520_521del . . 61.0 20.0 74.0 0.0 . 68 . . Atlas-INDEL DDX60L 91351 hgsc.bcm.edu hg19 4 169327112 169327112 + Frame_Shift_Del DEL G G - novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . DDX60L NM_001012967 exon24 c.3203delA p.Q1068fs . . 81.0 32.0 99.0 0.0 . 116 . . Atlas-INDEL GNPNAT1 64841 hgsc.bcm.edu hg19 14 53251349 53251349 + Frame_Shift_Del DEL G G - novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . GNPNAT1 NM_198066 exon2 c.21delT p.P7fs . . 80.0 34.0 85.0 0.0 . 14 . . Atlas-INDEL DCAF8L2 347442 hgsc.bcm.edu hg19 X 27765410 27765410 + Frame_Shift_Del DEL A A - rs371896121 alternate_allele TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . DCAF8L2 NM_001136533 exon1 c.397delG p.E133fs . . 52.0 10.0 60.0 0.0 . 79 . . Atlas-INDEL PTCH1 5727 hgsc.bcm.edu hg19 9 98232184 98232184 + Frame_Shift_Del DEL G G - novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . PTCH1 NM_000264 exon13 c.1759delA p.M587fs . . 79.0 32.0 90.0 0.0 . 1850 . . Atlas-INDEL PHOX2B 8929 hgsc.bcm.edu hg19 4 41748009 41748009 + Frame_Shift_Del DEL C C - novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . PHOX2B NM_003924 exon3 c.761delC p.A254fs . . 128.0 49.0 78.0 0.0 . 53 . . Atlas-INDEL DDX31 64794 hgsc.bcm.edu hg19 9 135505734 135505734 + Frame_Shift_Del DEL C C - novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . DDX31 NM_022779 exon16 c.1864delA p.I622fs . . 76.0 37.0 81.0 0.0 . 76 . . Atlas-INDEL PUS7 54517 hgsc.bcm.edu hg19 7 105098324 105098326 + In_Frame_Del DEL AGT AGT - novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 AGT AGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . PUS7 NM_019042 exon16 c.1898_1900del p.633_634del . . 89.0 34.0 78.0 0.0 . 59 . . Atlas-INDEL SCOC 60592 hgsc.bcm.edu hg19 4 141294733 141294742 + Frame_Shift_Del DEL GGCTGGGACG GGCTGGGACG - novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 GGCTGGGACG GGCTGGGACG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . SCOC NM_001153552 exon1 c.42_51del p.14_17del . . 51.0 17.0 82.0 0.0 . 11 . . Atlas-INDEL ZCCHC14 23174 hgsc.bcm.edu hg19 16 87451264 87451264 + Frame_Shift_Del DEL G G - novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . ZCCHC14 NM_015144 exon8 c.775delT p.L259fs . . 75.0 26.0 68.0 0.0 . 87 . . Atlas-INDEL CDH15 1013 hgsc.bcm.edu hg19 16 89260206 89260206 + Frame_Shift_Del DEL G G - novel TCGA-WJ-A86L-01A-12D-A45V-10 TCGA-WJ-A86L-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80e4fac9-c066-47a9-9fc0-2a42eef954cd cebd5a99-cbde-441d-b98a-b84cf1825d65 . CDH15 NM_004933 exon13 c.2035delA p.S679fs . . 41.0 30.0 56.0 0.0 . 54 . . Atlas-INDEL