Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm COL16A1 1307 hgsc.bcm.edu hg19 1 32157042 32157042 + Silent SNP A A G novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . COL16A1 NM_001856 exon19 c.T1374C p.P458P TATCCCAGGGGGT . 138.0 48.0 191.0 0.0 . 137 . . Atlas-SNP IFI44L 10964 hgsc.bcm.edu hg19 1 79107135 79107135 + Missense_Mutation SNP A A G novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . IFI44L NM_006820 exon8 c.A1165G p.K389E GTCCATAAAATGC . 111.0 6.0 98.0 0.0 . 93 . . Atlas-SNP COL11A1 1301 hgsc.bcm.edu hg19 1 103455118 103455118 + Missense_Mutation SNP C C A novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . COL11A1 NM_080629 exon29 c.G2386T p.G796C GAAAACCATCTTC . 596.0 176.0 576.0 1.0 . 972 . . Atlas-SNP VAV3 10451 hgsc.bcm.edu hg19 1 108138911 108138911 + Missense_Mutation SNP A A G novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 VAV3,NS,carcinoma,0,1 VAV3 NM_006113 exon25 c.T2273C p.L758S GTATCTAAGGTTC . 109.0 42.0 103.0 0.0 . 176 . . Atlas-SNP BCAN 63827 hgsc.bcm.edu hg19 1 156616814 156616814 + Missense_Mutation SNP C C T rs115373136 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . BCAN NM_198427 exon3 c.C313T p.R105W GCCTACCGGTTCC . 153.0 45.0 192.0 0.0 . 174 . C|0.989;G|0.011 Atlas-SNP CNTN2 6900 hgsc.bcm.edu hg19 1 205036323 205036323 + Missense_Mutation SNP T T G novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . CNTN2 NM_005076 exon16 c.T2070G p.I690M CAACATTCTGGGC . 234.0 17.0 231.0 0.0 . 116 . . Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179433556 179433556 + Missense_Mutation SNP A A C novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . TTN NM_001267550 exon326 c.T77303G p.L25768R CTAAAAAGATATT . 98.0 10.0 71.0 0.0 . 18412 . . Atlas-SNP ALPPL2 251 hgsc.bcm.edu hg19 2 233274402 233274402 + Missense_Mutation SNP G G T novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . ALPPL2 NM_031313 exon11 c.G1419T p.E473D GCAGGAGCAGACC . 146.0 8.0 184.0 0.0 . 36 . . Atlas-SNP BRPF1 7862 hgsc.bcm.edu hg19 3 9781391 9781391 + Missense_Mutation SNP C C G novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . BRPF1 NM_001003694 exon3 c.C1308G p.F436L CTCTTTCAGTGTC . 173.0 10.0 173.0 0.0 . 104 . . Atlas-SNP TRA2B 6434 hgsc.bcm.edu hg19 3 185644397 185644397 + Silent SNP A A T novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . TRA2B NM_004593 exon2 c.T162A p.S54S AGATTCAGATCGG . 92.0 9.0 91.0 0.0 . 36 . . Atlas-SNP KIAA1211 57482 hgsc.bcm.edu hg19 4 57180592 57180592 + Silent SNP T T G novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 KIAA1211,NS,carcinoma,+2,2 KIAA1211 NM_020722 exon8 c.T924G p.R308R GGAGCGTGAGGAG . 130.0 31.0 136.0 0.0 . 178 . . Atlas-SNP AMBN 258 hgsc.bcm.edu hg19 4 71467282 71467282 + Missense_Mutation SNP A A G novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . AMBN NM_016519 exon6 c.A442G p.I148V CCTCCAATTCACC . 104.0 6.0 111.0 0.0 . 73 . . Atlas-SNP ABLIM3 22885 hgsc.bcm.edu hg19 5 148617156 148617156 + Missense_Mutation SNP G G A novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . ABLIM3 NM_014945 exon11 c.G1034A p.G345D GATGTGGCTATGG . 105.0 11.0 113.0 0.0 . 91 . . Atlas-SNP TXNDC5 81567 hgsc.bcm.edu hg19 6 7899894 7899894 + Missense_Mutation SNP C C A novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . TXNDC5 NM_030810 exon3 c.G434T p.G145V TCTTGGCCTGGCT . 78.0 17.0 68.0 0.0 . 33 . . Atlas-SNP ZNF318 24149 hgsc.bcm.edu hg19 6 43305119 43305119 + Missense_Mutation SNP C C T novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . ZNF318 NM_014345 exon10 c.G6617A p.G2206E AATGGCCCCAACT . 91.0 8.0 100.0 0.0 . 175 . . Atlas-SNP AMD1 262 hgsc.bcm.edu hg19 6 111196314 111196314 + Silent SNP A A G novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . AMD1 NM_001634 exon1 c.A6G p.E2E GATGGAAGCTGCA . 63.0 9.0 47.0 0.0 . 23 . . Atlas-SNP MED23 9439 hgsc.bcm.edu hg19 6 131941772 131941772 + Missense_Mutation SNP T T C novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . MED23 NM_015979 exon7 c.A593G p.H198R ACCCAGTGTGGAA . 252.0 32.0 252.0 0.0 . 112 . . Atlas-SNP CREB5 9586 hgsc.bcm.edu hg19 7 28547252 28547252 + Missense_Mutation SNP C C T novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . CREB5 NM_182898 exon4 c.C188T p.T63M CCCCAACGAGATT . 151.0 11.0 106.0 0.0 . 115 . . Atlas-SNP ZNF727 442319 hgsc.bcm.edu hg19 7 63537704 63537704 + Missense_Mutation SNP G G T rs375815259 alternate_allele TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . ZNF727 NM_001159522 exon4 c.G277T p.D93Y ATAAACGATTCAT . 188.0 19.0 151.0 0.0 . 35 . . Atlas-SNP AKR1B1 231 hgsc.bcm.edu hg19 7 134136358 134136358 + Nonsense_Mutation SNP C C A novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 AKR1B1,NS,carcinoma,0,1 AKR1B1 NM_001628 exon2 c.G214T p.E72X AGAGCTCCTCACG . 111.0 44.0 51.0 0.0 . 32 . . Atlas-SNP WRN 7486 hgsc.bcm.edu hg19 8 30974005 30974005 + Missense_Mutation SNP G G T novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . WRN NM_000553 exon20 c.G2409T p.R803S CACAAGGAAAGAC . 79.0 14.0 63.0 0.0 . 116 . . Atlas-SNP KAT6A 7994 hgsc.bcm.edu hg19 8 41812897 41812897 + Silent SNP T T C novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . . NM_001099412 exon10 c.A1515G p.Q505Q GCGGACTTGTGGA . 108.0 13.0 94.0 0.0 . . . . Atlas-SNP DBH 1621 hgsc.bcm.edu hg19 9 136501520 136501520 + Silent SNP C C T novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 DBH,NS,carcinoma,0,1 DBH NM_000787 exon1 c.C27T p.S9S GGCCAGCCTGCCC . 229.0 16.0 281.0 0.0 . 86 . . Atlas-SNP WDR37 22884 hgsc.bcm.edu hg19 10 1118109 1118109 + Missense_Mutation SNP G G C novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . WDR37 NM_014023 exon2 c.G14C p.S5T CAGAAAGCGCAAG . 107.0 8.0 112.0 0.0 . 52 . . Atlas-SNP GPR158 57512 hgsc.bcm.edu hg19 10 25888075 25888075 + Missense_Mutation SNP T T A novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . GPR158 NM_020752 exon11 c.T3520A p.W1174R TGTCCTTGGGAGT . 36.0 16.0 31.0 0.0 . 255 . . Atlas-SNP VSTM4 196740 hgsc.bcm.edu hg19 10 50285295 50285295 + Nonsense_Mutation SNP C C T novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . VSTM4 NM_001031746 exon4 c.G603A p.W201X AGACTGCCAGACG . 75.0 4.0 74.0 0.0 . 83 . . Atlas-SNP KIAA1279 26128 hgsc.bcm.edu hg19 10 70775761 70775761 + Missense_Mutation SNP G G C novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . KIAA1279 NM_015634 exon7 c.G1455C p.M485I TATGATGGATTTG . 116.0 6.0 139.0 0.0 . 35 . . Atlas-SNP C10orf12 26148 hgsc.bcm.edu hg19 10 98741959 98741959 + Missense_Mutation SNP A A G novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . C10orf12 NM_015652 exon1 c.A812G p.D271G GTGGAGACGTTTC . 125.0 7.0 130.0 0.0 . 94 . . Atlas-SNP PNLIPRP1 5407 hgsc.bcm.edu hg19 10 118351992 118351992 + Missense_Mutation SNP G G T rs141478509 bycluster;alternate_allele TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . PNLIPRP1 NM_006229 exon4 c.G269T p.R90L AGACCCGGTTCAT . 90.0 22.0 96.0 0.0 . 82 . G|1.000;A|0.000 Atlas-SNP CPSF7 79869 hgsc.bcm.edu hg19 11 61183611 61183611 + Missense_Mutation SNP T T C rs143271041 TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . CPSF7 NM_024811 exon6 c.A1060G p.M354V CCTTCATGTAAGT . 62.0 10.0 91.0 0.0 . 46 . T|1.000;C|0.000 Atlas-SNP CARNS1 57571 hgsc.bcm.edu hg19 11 67191670 67191670 + Missense_Mutation SNP G G A novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . CARNS1 NM_001166222 exon10 c.G2451A p.M817I CCGCATGGGTGGC . 114.0 31.0 156.0 0.0 . 60 . . Atlas-SNP TYR 7299 hgsc.bcm.edu hg19 11 88924399 88924399 + Silent SNP C C T novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . TYR NM_000372 exon2 c.C849T p.N283N GTACAACAGCCAT . 167.0 55.0 141.0 0.0 . 130 . . Atlas-SNP SNX19 399979 hgsc.bcm.edu hg19 11 130773191 130773191 + Missense_Mutation SNP C C A novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . SNX19 NM_014758 exon8 c.G2532T p.M844I CTTTTGCATGTTT . 123.0 5.0 129.0 0.0 . 84 . . Atlas-SNP CS 1431 hgsc.bcm.edu hg19 12 56667010 56667010 + Missense_Mutation SNP T T C novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . CS NM_004077 exon11 c.A1259G p.Y420C ACCGTGTAGTAAT . 152.0 34.0 174.0 0.0 . 44 . . Atlas-SNP N4BP2L2 10443 hgsc.bcm.edu hg19 13 33109968 33109968 + Missense_Mutation SNP T T A novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . N4BP2L2 NM_014887 exon2 c.A1197T p.K399N CTGCAATTTATTT . 92.0 5.0 90.0 0.0 . 90 . . Atlas-SNP SPG20 23111 hgsc.bcm.edu hg19 13 36905735 36905735 + Splice_Site SNP T T C novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . SPG20 NM_015087 exon4 c.811-2A>G . CAAACCTGAAAGG . 92.0 30.0 83.0 0.0 . 87 . . Atlas-SNP POSTN 10631 hgsc.bcm.edu hg19 13 38153242 38153242 + Missense_Mutation SNP A A G novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . POSTN NM_006475 exon14 c.T1808C p.L603P TTCACCAGAAGTG . 154.0 21.0 107.0 0.0 . 161 . . Atlas-SNP COL4A2 1284 hgsc.bcm.edu hg19 13 111125290 111125290 + Nonsense_Mutation SNP C C T novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . COL4A2 NM_001846 exon29 c.C2218T p.R740X GGACCCCGAGGAT . 198.0 14.0 207.0 0.0 . 178 . . Atlas-SNP PSMC6 5706 hgsc.bcm.edu hg19 14 53175062 53175062 + Nonsense_Mutation SNP G G T novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . PSMC6 NM_002806 exon2 c.G163T p.E55X CAGTATGAAAAGT . 132.0 42.0 147.0 0.0 . 71 . . Atlas-SNP GCNT3 9245 hgsc.bcm.edu hg19 15 59911450 59911450 + Missense_Mutation SNP G G A rs142393489 alternate_allele TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 GCNT3,NS,carcinoma,+1,1 GCNT3 NM_004751 exon3 c.G1013A p.R338H TTCAGCGTGCACG . 135.0 7.0 109.0 0.0 . 42 . G|1.000;C|0.000 Atlas-SNP TBL3 10607 hgsc.bcm.edu hg19 16 2025894 2025894 + Missense_Mutation SNP G G T novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . TBL3 NM_006453 exon11 c.G1073T p.C358F GCCCCTGCCTAAA . 113.0 18.0 209.0 0.0 . 54 . . Atlas-SNP TBL3 10607 hgsc.bcm.edu hg19 16 2025898 2025898 + Silent SNP A A G novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . TBL3 NM_006453 exon11 c.A1077G p.L359L CTGCCTAAAAGTG . 120.0 20.0 208.0 0.0 . 54 . . Atlas-SNP MT1H 4496 hgsc.bcm.edu hg19 16 56704900 56704900 + Silent SNP G G A novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . MT1H NM_005951 exon3 c.G185A p.X62X GTGCCTGATGTCG . 44.0 8.0 62.0 0.0 . 19 . . Atlas-SNP VPS9D1 9605 hgsc.bcm.edu hg19 16 89783145 89783145 + Silent SNP G G T novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . . NM_004913 exon3 c.C261A p.A87A AAGCTTGGCGGCC . 82.0 4.0 89.0 0.0 . . . . Atlas-SNP DNAH9 1770 hgsc.bcm.edu hg19 17 11515011 11515011 + Missense_Mutation SNP C C G novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . DNAH9 NM_001372 exon4 c.C818G p.T273R CAATAACGGTGAG . 127.0 10.0 139.0 0.0 . 695 . . Atlas-SNP SEPT4 5414 hgsc.bcm.edu hg19 17 56604304 56604304 + Silent SNP T T A novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . SEPT4 NM_001256782 exon3 c.A141T p.G47G CAGTTCTCCATCA . 57.0 14.0 82.0 0.0 . 48 . . Atlas-SNP CLTC 1213 hgsc.bcm.edu hg19 17 57724931 57724931 + Missense_Mutation SNP G G A novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . CLTC NM_004859 exon3 c.G423A p.M141I GAAAATGTTTGAT . 186.0 13.0 168.0 0.0 . 124 . . Atlas-SNP CEP112 201134 hgsc.bcm.edu hg19 17 64128831 64128831 + Missense_Mutation SNP G G T novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . CEP112 NM_001199165 exon5 c.C521A p.P174Q TGAGTTGGACTCA . 112.0 5.0 89.0 0.0 . 192 . . Atlas-SNP BPTF 2186 hgsc.bcm.edu hg19 17 65916145 65916145 + Nonsense_Mutation SNP G G T novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . BPTF NM_004459 exon15 c.G5821T p.E1941X GAAACTGAAATCA . 82.0 4.0 93.0 0.0 . 415 . . Atlas-SNP ELAC1 55520 hgsc.bcm.edu hg19 18 48510826 48510826 + Missense_Mutation SNP T T G novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 ELAC1,colon,carcinoma,0,1 ELAC1 NM_018696 exon3 c.T518G p.F173C AACAATTTGTTGT . 138.0 14.0 113.0 0.0 . 17 . . Atlas-SNP SERPINB3 6317 hgsc.bcm.edu hg19 18 61323171 61323171 + Missense_Mutation SNP G G A rs377088096 TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 SERPINB3,NS,carcinoma,0,1 SERPINB3 NM_006919 exon8 c.C893T p.T298M CTCAACGTGTCCT . 147.0 24.0 114.0 0.0 . 90 . . Atlas-SNP ZNF407 55628 hgsc.bcm.edu hg19 18 72344756 72344756 + Nonsense_Mutation SNP C C G novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . ZNF407 NM_001146190 exon1 c.C1781G p.S594X GTTGTTCATTTAT . 117.0 7.0 110.0 0.0 . 231 . . Atlas-SNP DPF1 8193 hgsc.bcm.edu hg19 19 38713312 38713312 + Missense_Mutation SNP G G C novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . DPF1 NM_001135155 exon2 c.C147G p.H49Q GCGGCAGTGCTCG . 121.0 23.0 164.0 0.0 . 54 . . Atlas-SNP EID2B 126272 hgsc.bcm.edu hg19 19 40023135 40023135 + Missense_Mutation SNP C C A novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . EID2B NM_152361 exon1 c.G308T p.S103I ATGGAGCTACCAT . 324.0 30.0 350.0 0.0 . 9 . . Atlas-SNP PANK2 80025 hgsc.bcm.edu hg19 20 3897669 3897669 + Missense_Mutation SNP C C T novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . PANK2 NM_153638 exon5 c.C1508T p.S503L TTGGCTCAATAGC . 133.0 25.0 166.0 0.0 . 37 . . Atlas-SNP TCFL5 10732 hgsc.bcm.edu hg19 20 61491546 61491546 + Silent SNP T T C novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . TCFL5 NM_006602 exon2 c.A762G p.Q254Q TGTAAATTGCAAA . 130.0 23.0 163.0 0.0 . 43 . . Atlas-SNP AP1B1 162 hgsc.bcm.edu hg19 22 29727788 29727788 + Silent SNP C C G novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . AP1B1 NM_001127 exon18 c.G2427C p.L809L GTTGTTCAGAGGC . 94.0 12.0 143.0 0.0 . 72 . . Atlas-SNP COX1 5742 hgsc.bcm.edu hg19 MT 7326 7326 + Missense_Mutation SNP G G A rs3884237 TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . . ENST00000361624 exon1 c.G1423A p.A475T TGAGAAGCCTTCG . 81.0 7.0 13.0 0.0 . . . . Atlas-SNP ND5 0 hgsc.bcm.edu hg19 MT 12730 12730 + Missense_Mutation SNP G G A novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . . ENST00000361567 exon1 c.G394A p.V132I ATCTTAGTTACCG . 105.0 17.0 15.0 0.0 . . . . Atlas-SNP PPP2R5C 5527 hgsc.bcm.edu hg19 14 102356589 102356590 + Frame_Shift_Del DEL AG AG - novel TCGA-WX-AA46-01A-11D-A38X-10 TCGA-WX-AA46-10A-01D-A38X-10 AG AG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 8c32ea52-9c54-4776-ac95-a5a2a4a6d084 3ca4659e-8911-4dee-b019-29b5cf9bc842 . PPP2R5C NM_001161726 exon8 c.809_810del p.270_270del . . 115.0 27.0 137.0 0.0 . 74 . . Atlas-INDEL