Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
NADK	65220	hgsc.bcm.edu	hg19	1	1684346	1684346	+	Silent	SNP	G	G	C	novel		TCGA-XR-A8TE-01A-11D-A35Z-10	TCGA-XR-A8TE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52ed1382-9a5b-4ac9-95ff-e59c6d6c48ff	2d84231b-c606-494f-9df7-68b2f88ac114	.	NADK	NM_001198994	exon14	c.C1773G	p.G591G	GACCTAGCCCTCC	.	65.0	6.0	99.0	0.0	.	79	.	.	Atlas-SNP
CLIP4	79745	hgsc.bcm.edu	hg19	2	29366594	29366594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XR-A8TE-01A-11D-A35Z-10	TCGA-XR-A8TE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52ed1382-9a5b-4ac9-95ff-e59c6d6c48ff	2d84231b-c606-494f-9df7-68b2f88ac114	.	CLIP4	NM_024692	exon7	c.C668A	p.P223H	AGATCCCTGCTGA	.	129.0	57.0	177.0	0.0	.	69	.	.	Atlas-SNP
SIX2	10736	hgsc.bcm.edu	hg19	2	45235916	45235916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XR-A8TE-01A-11D-A35Z-10	TCGA-XR-A8TE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52ed1382-9a5b-4ac9-95ff-e59c6d6c48ff	2d84231b-c606-494f-9df7-68b2f88ac114	.	SIX2	NM_016932	exon1	c.C334T	p.R112C	TGCGGCGCACGCG	.	102.0	6.0	103.0	0.0	.	39	.	.	Atlas-SNP
MMRN1	22915	hgsc.bcm.edu	hg19	4	90857798	90857798	+	Silent	SNP	G	G	A	novel		TCGA-XR-A8TE-01A-11D-A35Z-10	TCGA-XR-A8TE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52ed1382-9a5b-4ac9-95ff-e59c6d6c48ff	2d84231b-c606-494f-9df7-68b2f88ac114	.	MMRN1	NM_007351	exon6	c.G2967A	p.S989S	TCGATCGTTGCCT	.	173.0	33.0	215.0	0.0	.	174	.	.	Atlas-SNP
GPM6A	2823	hgsc.bcm.edu	hg19	4	176556161	176556161	+	Silent	SNP	G	G	A	rs141777363		TCGA-XR-A8TE-01A-11D-A35Z-10	TCGA-XR-A8TE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52ed1382-9a5b-4ac9-95ff-e59c6d6c48ff	2d84231b-c606-494f-9df7-68b2f88ac114	.	GPM6A	NM_201591	exon7	c.C732T	p.D244D	GCAGGCGTCTTTC	.	48.0	15.0	69.0	0.0	.	70	.	G|1.000;A|0.000	Atlas-SNP
EIF2AK1	27102	hgsc.bcm.edu	hg19	7	6064424	6064424	+	Silent	SNP	G	G	T	novel		TCGA-XR-A8TE-01A-11D-A35Z-10	TCGA-XR-A8TE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52ed1382-9a5b-4ac9-95ff-e59c6d6c48ff	2d84231b-c606-494f-9df7-68b2f88ac114	.	EIF2AK1	NM_014413	exon15	c.C1773A	p.L591L	TAGGGTGAGGTTA	.	76.0	4.0	65.0	0.0	.	76	.	.	Atlas-SNP
AHR	196	hgsc.bcm.edu	hg19	7	17362177	17362177	+	Silent	SNP	A	A	G	novel		TCGA-XR-A8TE-01A-11D-A35Z-10	TCGA-XR-A8TE-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52ed1382-9a5b-4ac9-95ff-e59c6d6c48ff	2d84231b-c606-494f-9df7-68b2f88ac114	.	AHR	NM_001621	exon3	c.A306G	p.R102R	CTGTAGAGCAGCA	.	641.0	30.0	567.0	0.0	.	89	.	.	Atlas-SNP
LRRC4	64101	hgsc.bcm.edu	hg19	7	127669904	127669904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XR-A8TE-01A-11D-A35Z-10	TCGA-XR-A8TE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52ed1382-9a5b-4ac9-95ff-e59c6d6c48ff	2d84231b-c606-494f-9df7-68b2f88ac114	LRRC4,colon,carcinoma,0,1	LRRC4	NM_022143	exon2	c.G790A	p.G264R	CCAGCCCGTCAAA	.	122.0	27.0	145.0	0.0	.	72	.	.	Atlas-SNP
IRF5	3663	hgsc.bcm.edu	hg19	7	128587359	128587359	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-XR-A8TE-01A-11D-A35Z-10	TCGA-XR-A8TE-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52ed1382-9a5b-4ac9-95ff-e59c6d6c48ff	2d84231b-c606-494f-9df7-68b2f88ac114	.	IRF5	NM_001098629	exon6	c.A557G	p.Q186R	CTCTGCAGCCGCC	.	131.0	10.0	145.0	0.0	.	40	.	.	Atlas-SNP
IRF5	3663	hgsc.bcm.edu	hg19	7	128587366	128587366	+	Silent	SNP	C	C	T	novel		TCGA-XR-A8TE-01A-11D-A35Z-10	TCGA-XR-A8TE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52ed1382-9a5b-4ac9-95ff-e59c6d6c48ff	2d84231b-c606-494f-9df7-68b2f88ac114	.	IRF5	NM_001098629	exon6	c.C564T	p.P188P	GCCGCCCACTCTG	.	131.0	17.0	129.0	0.0	.	40	.	.	Atlas-SNP
PODXL	5420	hgsc.bcm.edu	hg19	7	131241035	131241035	+	Silent	SNP	C	C	G	novel		TCGA-XR-A8TE-01A-11D-A35Z-10	TCGA-XR-A8TE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52ed1382-9a5b-4ac9-95ff-e59c6d6c48ff	2d84231b-c606-494f-9df7-68b2f88ac114	.	PODXL	NM_001018111	exon1	c.G84C	p.P28P	GGGCGACGGCGAC	.	105.0	5.0	60.0	0.0	.	53	.	.	Atlas-SNP
XKR4	114786	hgsc.bcm.edu	hg19	8	56270341	56270341	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-XR-A8TE-01A-11D-A35Z-10	TCGA-XR-A8TE-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52ed1382-9a5b-4ac9-95ff-e59c6d6c48ff	2d84231b-c606-494f-9df7-68b2f88ac114	.	XKR4	NM_052898	exon2	c.A910C	p.M304L	GTGAGTATGCTGC	.	109.0	13.0	128.0	0.0	.	104	.	.	Atlas-SNP
CNTNAP3	79937	hgsc.bcm.edu	hg19	9	39078814	39078814	+	Silent	SNP	C	C	A	novel		TCGA-XR-A8TE-01A-11D-A35Z-10	TCGA-XR-A8TE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52ed1382-9a5b-4ac9-95ff-e59c6d6c48ff	2d84231b-c606-494f-9df7-68b2f88ac114	CNTNAP3,NS,carcinoma,0,1	CNTNAP3	NM_033655	exon22	c.G3546T	p.A1182A	GCGCAGCGCCGCC	.	6.0	2.0	12.0	1.0	.	82	.	.	Atlas-SNP
GNA14	9630	hgsc.bcm.edu	hg19	9	80144156	80144156	+	Silent	SNP	A	A	G	novel		TCGA-XR-A8TE-01A-11D-A35Z-10	TCGA-XR-A8TE-10A-01D-A35Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52ed1382-9a5b-4ac9-95ff-e59c6d6c48ff	2d84231b-c606-494f-9df7-68b2f88ac114	.	GNA14	NM_004297	exon2	c.T138C	p.S46S	TTTCCCACTTTCA	.	76.0	10.0	102.0	0.0	.	50	.	.	Atlas-SNP
SMPD1	6609	hgsc.bcm.edu	hg19	11	6411972	6411972	+	Silent	SNP	T	T	G	novel		TCGA-XR-A8TE-01A-11D-A35Z-10	TCGA-XR-A8TE-10A-01D-A35Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52ed1382-9a5b-4ac9-95ff-e59c6d6c48ff	2d84231b-c606-494f-9df7-68b2f88ac114	.	SMPD1	NM_000543	exon1	c.T144G	p.A48A	GCTGGCTCTGTCT	.	69.0	6.0	112.0	0.0	.	108	.	.	Atlas-SNP
MUC15	143662	hgsc.bcm.edu	hg19	11	26582625	26582625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-XR-A8TE-01A-11D-A35Z-10	TCGA-XR-A8TE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52ed1382-9a5b-4ac9-95ff-e59c6d6c48ff	2d84231b-c606-494f-9df7-68b2f88ac114	MUC15_ENST00000436318,NS,carcinoma,0,3	MUC15	NM_001135091	exon5	c.G1073A	p.R358H	GAAGTACGAAGTG	.	88.0	26.0	99.0	0.0	.	88	.	.	Atlas-SNP
PYGM	5837	hgsc.bcm.edu	hg19	11	64522206	64522206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-XR-A8TE-01A-11D-A35Z-10	TCGA-XR-A8TE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52ed1382-9a5b-4ac9-95ff-e59c6d6c48ff	2d84231b-c606-494f-9df7-68b2f88ac114	.	PYGM	NM_005609	exon8	c.C958A	p.R320S	GATCACGGCAGCC	.	71.0	4.0	94.0	0.0	.	77	.	.	Atlas-SNP
KLRC1	3821	hgsc.bcm.edu	hg19	12	10603179	10603179	+	Splice_Site	SNP	C	C	A	novel		TCGA-XR-A8TE-01A-11D-A35Z-10	TCGA-XR-A8TE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52ed1382-9a5b-4ac9-95ff-e59c6d6c48ff	2d84231b-c606-494f-9df7-68b2f88ac114	.	KLRC1	NM_002259	exon4	c.188-1G>T	.	GTAAATCTGCAGG	.	68.0	14.0	85.0	0.0	.	33	.	.	Atlas-SNP
WNK4	65266	hgsc.bcm.edu	hg19	17	40933030	40933030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-XR-A8TE-01A-11D-A35Z-10	TCGA-XR-A8TE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52ed1382-9a5b-4ac9-95ff-e59c6d6c48ff	2d84231b-c606-494f-9df7-68b2f88ac114	.	WNK4	NM_032387	exon1	c.C314A	p.P105H	AAGAACCCCCCGA	.	82.0	10.0	107.0	0.0	.	182	.	.	Atlas-SNP
MBD3L1	85509	hgsc.bcm.edu	hg19	19	8953859	8953859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XR-A8TE-01A-11D-A35Z-10	TCGA-XR-A8TE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52ed1382-9a5b-4ac9-95ff-e59c6d6c48ff	2d84231b-c606-494f-9df7-68b2f88ac114	MBD3L1,colon,carcinoma,0,1	MBD3L1	NM_145208	exon1	c.G505A	p.A169T	AGACTCGCAATAG	.	40.0	12.0	65.0	0.0	.	24	.	.	Atlas-SNP
ND3	0	hgsc.bcm.edu	hg19	MT	10392	10392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-XR-A8TE-01A-11D-A35Z-10	TCGA-XR-A8TE-10A-01D-A35Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52ed1382-9a5b-4ac9-95ff-e59c6d6c48ff	2d84231b-c606-494f-9df7-68b2f88ac114	.	.	ENST00000361227	exon1	c.G334A	p.D112N	GGATTAGACTGAA	.	23.0	21.0	27.0	0.0	.	.	.	.	Atlas-SNP
SYT7	9066	hgsc.bcm.edu	hg19	11	61290591	61290591	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-XR-A8TE-01A-11D-A35Z-10	TCGA-XR-A8TE-10A-01D-A35Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	52ed1382-9a5b-4ac9-95ff-e59c6d6c48ff	2d84231b-c606-494f-9df7-68b2f88ac114	.	SYT7	NM_001252065	exon9	c.1289delT	p.V430fs	.	.	72.0	23.0	96.0	0.0	.	39	.	.	Atlas-INDEL