Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm LSM10 84967 hgsc.bcm.edu hg19 1 36859597 36859597 + Missense_Mutation SNP T T A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . LSM10 NM_032881 exon2 c.A134T p.N45I TCGACATTGTCTA . 105.0 40.0 74.0 0.0 . 9 . . Atlas-SNP ZC3H12A 80149 hgsc.bcm.edu hg19 1 37945929 37945929 + Missense_Mutation SNP T T A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . ZC3H12A NM_025079 exon3 c.T482A p.L161Q GCATCCTGCTGGC . 76.0 28.0 62.0 0.0 . 58 . . Atlas-SNP FAAH 2166 hgsc.bcm.edu hg19 1 46876499 46876499 + Missense_Mutation SNP C C T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . FAAH NM_001441 exon11 c.C1289T p.S430L GGCTGTCAGCTTT . 53.0 10.0 55.0 0.0 . 36 . . Atlas-SNP GSTM3 2947 hgsc.bcm.edu hg19 1 110280323 110280323 + Silent SNP T T C novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . GSTM3 NM_000849 exon7 c.A423G p.Q141Q GGAGAATTGTTTC . 267.0 110.0 191.0 0.0 . 21 . . Atlas-SNP CHD1L 9557 hgsc.bcm.edu hg19 1 146765405 146765405 + Missense_Mutation SNP A A C novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . CHD1L NM_004284 exon21 c.A2505C p.K835N GAAGAAAGGTAAG . 82.0 5.0 46.0 0.0 . 72 . . Atlas-SNP FLG2 388698 hgsc.bcm.edu hg19 1 152328015 152328015 + Silent SNP C C G novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . FLG2 NM_001014342 exon3 c.G2247C p.G749G GCCAGACCCATGT . 210.0 107.0 125.0 0.0 . 431 . . Atlas-SNP SSR2 6746 hgsc.bcm.edu hg19 1 155984782 155984782 + Silent SNP A A C novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . SSR2 NM_003145 exon4 c.T333G p.T111T CAGGTAAGTAATT . 261.0 51.0 96.0 0.0 . 20 . . Atlas-SNP CEP350 9857 hgsc.bcm.edu hg19 1 180000501 180000501 + Missense_Mutation SNP G G C novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . CEP350 NM_014810 exon15 c.G3597C p.E1199D TGATGAGGAAAAA . 564.0 310.0 280.0 0.0 . 418 . . Atlas-SNP TPR 7175 hgsc.bcm.edu hg19 1 186322973 186322973 + Missense_Mutation SNP C C A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . TPR NM_003292 exon18 c.G2181T p.M727I TTGCAGCATTTCA . 81.0 14.0 31.0 0.0 . 441 . . Atlas-SNP KIAA1804 0 hgsc.bcm.edu hg19 1 233514789 233514789 + Missense_Mutation SNP G G T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . KIAA1804 NM_032435 exon9 c.G2037T p.Q679H TGCTCAGAGAGAG . 259.0 20.0 211.0 0.0 . 129 . . Atlas-SNP EHD3 30845 hgsc.bcm.edu hg19 2 31472315 31472315 + Silent SNP G G A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . EHD3 NM_014600 exon3 c.G483A p.E161E TGGGGAGAAGCAG . 69.0 37.0 61.0 0.0 . 90 . . Atlas-SNP BIRC6 57448 hgsc.bcm.edu hg19 2 32689764 32689764 + Missense_Mutation SNP C C G novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . BIRC6 NM_016252 exon25 c.C5129G p.T1710S CACTCACTCCACC . 112.0 46.0 119.0 0.0 . 838 . . Atlas-SNP PCBP1 5093 hgsc.bcm.edu hg19 2 70315913 70315913 + Missense_Mutation SNP G G T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . PCBP1 NM_006196 exon1 c.G1038T p.R346S TGCCAGGCTTTCC . 64.0 34.0 60.0 0.0 . 28 . . Atlas-SNP C2orf81 388963 hgsc.bcm.edu hg19 2 74642705 74642705 + Nonsense_Mutation SNP C C T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . C2orf81 NM_001145054 exon4 c.G518A p.W173X CCCATCCACGACC . 65.0 27.0 40.0 0.0 . 23 . . Atlas-SNP REG3G 130120 hgsc.bcm.edu hg19 2 79254181 79254181 + Missense_Mutation SNP T T C novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . REG3G NM_198448 exon4 c.T217C p.S73P CGGCCCTCTGGAA . 90.0 4.0 74.0 0.0 . 67 . . Atlas-SNP IL18RAP 8807 hgsc.bcm.edu hg19 2 103057777 103057777 + Missense_Mutation SNP G G A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . IL18RAP NM_003853 exon7 c.G736A p.D246N GTGGGAGACACTA . 68.0 32.0 48.0 0.0 . 102 . . Atlas-SNP HOXD12 3238 hgsc.bcm.edu hg19 2 176964607 176964607 + Silent SNP C C T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . HOXD12 NM_021193 exon1 c.C78T p.F26F CTACTTCTCCAAC . 99.0 35.0 80.0 0.0 . 25 . . Atlas-SNP FSIP2 401024 hgsc.bcm.edu hg19 2 186673007 186673007 + Missense_Mutation SNP T T G novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 FSIP2_ENST00000343098,colon,carcinoma,0,2 FSIP2 NM_173651 exon17 c.T19241G p.I6414S TCAAAATTATTGA . 253.0 45.0 182.0 0.0 . 251 . . Atlas-SNP FSIP2 401024 hgsc.bcm.edu hg19 2 186673014 186673014 + Missense_Mutation SNP T T A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . FSIP2 NM_173651 exon17 c.T19248A p.D6416E TATTGATGAACTT . 255.0 45.0 183.0 0.0 . 251 . . Atlas-SNP LAMB2 3913 hgsc.bcm.edu hg19 3 49169137 49169137 + Missense_Mutation SNP A A C novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . LAMB2 NM_002292 exon5 c.T479G p.M160R ACCAGCATGGCAG . 83.0 6.0 50.0 0.0 . 156 . . Atlas-SNP LAMB2 3913 hgsc.bcm.edu hg19 3 49169138 49169138 + Missense_Mutation SNP T T A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . LAMB2 NM_002292 exon5 c.A478T p.M160L CCAGCATGGCAGC . 82.0 6.0 50.0 0.0 . 156 . . Atlas-SNP PEX5L 51555 hgsc.bcm.edu hg19 3 179689381 179689381 + Splice_Site SNP C C T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . PEX5L NM_001256752 exon3 c.93+1G>A . CACTTACCTGCTT . 78.0 31.0 56.0 0.0 . 104 . . Atlas-SNP ADD1 118 hgsc.bcm.edu hg19 4 2909499 2909499 + Silent SNP C C A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . ADD1 NM_176801 exon11 c.C1536A p.S512S AACTTCCACCTCT . 159.0 17.0 102.0 0.0 . 56 . . Atlas-SNP SLAIN2 57606 hgsc.bcm.edu hg19 4 48385695 48385695 + Silent SNP C C A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . SLAIN2 NM_020846 exon6 c.C1254A p.S418S CCTGTCCCGAACA . 485.0 21.0 240.0 0.0 . 31 . . Atlas-SNP YTHDC1 91746 hgsc.bcm.edu hg19 4 69179869 69179869 + Missense_Mutation SNP C C A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 YTHDC1,NS,carcinoma,0,1 YTHDC1 NM_001031732 exon17 c.G2132T p.R711L CATAATCGCTCTC . 123.0 28.0 82.0 0.0 . 81 . . Atlas-SNP ANK2 287 hgsc.bcm.edu hg19 4 114274408 114274408 + Missense_Mutation SNP C C G novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . ANK2 NM_001148 exon38 c.C4634G p.P1545R AAGAGCCAGGAGA . 107.0 84.0 138.0 0.0 . 576 . . Atlas-SNP LARP1B 55132 hgsc.bcm.edu hg19 4 129019441 129019441 + Nonsense_Mutation SNP C C T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . LARP1B NM_032239 exon8 c.C769T p.Q257X GGTTTTCAGCGTG . 72.0 14.0 40.0 0.0 . 120 . . Atlas-SNP ZNF827 152485 hgsc.bcm.edu hg19 4 146823924 146823924 + Missense_Mutation SNP C C A rs139372039 alternate_allele TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . ZNF827 NM_178835 exon2 c.G487T p.A163S GCTGGGCGTGGTG . 57.0 28.0 45.0 0.0 . 102 . C|1.000;T|0.000 Atlas-SNP TENM3 55714 hgsc.bcm.edu hg19 4 183721246 183721246 + Silent SNP C C T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . . NM_001080477 exon27 c.C7842T p.D2614D CCTGGACGAGGAG . 95.0 35.0 51.0 0.0 . . . . Atlas-SNP GCNT4 51301 hgsc.bcm.edu hg19 5 74325466 74325466 + Missense_Mutation SNP T T G novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . GCNT4 NM_016591 exon1 c.A397C p.I133L AGGCTATTGGGAA . 90.0 6.0 55.0 0.0 . 46 . . Atlas-SNP CHD1 1105 hgsc.bcm.edu hg19 5 98192416 98192416 + Nonsense_Mutation SNP T T A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . CHD1 NM_001270 exon35 c.A4801T p.R1601X TCTCTCTGTCACT . 110.0 43.0 78.0 0.0 . 137 . . Atlas-SNP TENM2 57451 hgsc.bcm.edu hg19 5 167525124 167525124 + Missense_Mutation SNP G G C novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . . NM_001122679 exon9 c.G1805C p.C602S CAGACTGTGCTAA . 140.0 33.0 77.0 0.0 . . . . Atlas-SNP TNXB 7148 hgsc.bcm.edu hg19 6 32047000 32047000 + Silent SNP G G A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . TNXB NM_019105 exon11 c.C4185T p.P1395P GCCCTGGGGGACG . 77.0 11.0 62.0 0.0 . 553 . . Atlas-SNP PACSIN1 29993 hgsc.bcm.edu hg19 6 34494117 34494117 + Missense_Mutation SNP C C A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . PACSIN1 NM_020804 exon2 c.C35A p.P12Q TGGCGCCAGAGGA . 73.0 40.0 37.0 0.0 . 42 . . Atlas-SNP DNAH8 1769 hgsc.bcm.edu hg19 6 38743590 38743590 + Missense_Mutation SNP G G A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . DNAH8 NM_001206927 exon13 c.G1825A p.G609R ATAGAAGGAATAG . 493.0 181.0 374.0 0.0 . 1239 . . Atlas-SNP FILIP1 27145 hgsc.bcm.edu hg19 6 76072567 76072567 + Missense_Mutation SNP A A G novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . FILIP1 NM_015687 exon3 c.T343C p.Y115H ACCCGTAATGAGC . 63.0 33.0 69.0 0.0 . 173 . . Atlas-SNP BVES 11149 hgsc.bcm.edu hg19 6 105564646 105564646 + Missense_Mutation SNP A A C novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . BVES NM_001199563 exon6 c.T746G p.F249C TACCTAAAGATTT . 108.0 40.0 97.0 0.0 . 33 . . Atlas-SNP CITED2 10370 hgsc.bcm.edu hg19 6 139694788 139694788 + Missense_Mutation SNP G G T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . CITED2 NM_001168389 exon2 c.C309A p.F103L ACCCATGAACTGG . 57.0 21.0 38.0 0.0 . 16 . . Atlas-SNP GRM1 2911 hgsc.bcm.edu hg19 6 146755516 146755516 + Missense_Mutation SNP G G T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . GRM1 NM_000838 exon9 c.G3169T p.G1057C CCCGGTGGTCCCG . 134.0 61.0 120.0 0.0 . 419 . . Atlas-SNP MICALL2 79778 hgsc.bcm.edu hg19 7 1484708 1484708 + Missense_Mutation SNP T T A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . MICALL2 NM_182924 exon6 c.A998T p.E333V TTCCCCTCCGTGG . 57.0 23.0 44.0 0.0 . 63 . . Atlas-SNP SDK1 221935 hgsc.bcm.edu hg19 7 4150329 4150329 + Missense_Mutation SNP C C T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . SDK1 NM_152744 exon23 c.C3359T p.T1120I GGGTCACCCTCTA . 63.0 19.0 51.0 0.0 . 361 . . Atlas-SNP IGFBP3 3486 hgsc.bcm.edu hg19 7 45954471 45954471 + Missense_Mutation SNP T T C novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . IGFBP3 NM_001013398 exon4 c.A842G p.Y281C GTGGTGTAGCCTG . 83.0 30.0 62.0 0.0 . 40 . . Atlas-SNP PCMTD1 115294 hgsc.bcm.edu hg19 8 52733033 52733033 + Missense_Mutation SNP T T G novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . PCMTD1 NM_052937 exon6 c.A952C p.K318Q GATCTTTTTCCTC . 107.0 9.0 64.0 0.0 . 73 . . Atlas-SNP PREX2 80243 hgsc.bcm.edu hg19 8 69104690 69104690 + Missense_Mutation SNP T T C novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . PREX2 NM_024870 exon37 c.T4534C p.S1512P CTGCTGTCAGTTT . 65.0 11.0 38.0 0.0 . 614 . . Atlas-SNP JPH1 56704 hgsc.bcm.edu hg19 8 75227529 75227529 + Missense_Mutation SNP G G A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . JPH1 NM_020647 exon2 c.C706T p.R236C AGCTGCGCTTGCT . 147.0 17.0 107.0 0.0 . 77 . . Atlas-SNP CDKN2A 1029 hgsc.bcm.edu hg19 9 21971209 21971209 + Splice_Site SNP T T A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 CDKN2A_ENST00000498124,bladder,carcinoma,0,17 CDKN2A NM_001195132 exon3 c.151-2A>T . ATGACCTGCCAGA . 43.0 16.0 37.0 0.0 . 4810 . . Atlas-SNP AGTPBP1 23287 hgsc.bcm.edu hg19 9 88162138 88162138 + Silent SNP T T C novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . AGTPBP1 NM_015239 exon26 c.A3447G p.A1149A ACTTTCTGCACTG . 98.0 42.0 86.0 0.0 . 128 . . Atlas-SNP ABCA2 20 hgsc.bcm.edu hg19 9 139910208 139910208 + Missense_Mutation SNP T T C novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . ABCA2 NM_212533 exon23 c.A3523G p.I1175V GGATGATGGCGCG . 95.0 38.0 61.0 0.0 . 113 . . Atlas-SNP ASCC1 51008 hgsc.bcm.edu hg19 10 73857193 73857193 + Missense_Mutation SNP A A T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . ASCC1 NM_001198798 exon10 c.T973A p.Y325N CAAAGTAGAAGTT . 171.0 14.0 107.0 0.0 . 18 . . Atlas-SNP ATRNL1 26033 hgsc.bcm.edu hg19 10 117154258 117154258 + Nonsense_Mutation SNP C C T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 ATRNL1,NS,lymphoid_neoplasm,0,1 ATRNL1 NM_207303 exon20 c.C3265T p.Q1089X CAATGCCAATTGT . 87.0 31.0 93.0 0.0 . 219 . . Atlas-SNP USH1C 10083 hgsc.bcm.edu hg19 11 17542918 17542918 + Missense_Mutation SNP C C T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 USH1C_ENST00000318024,colon,carcinoma,0,2 USH1C NM_005709 exon13 c.G1060A p.E354K ATCTCTCATTTTC . 99.0 23.0 85.0 0.0 . 157 . . Atlas-SNP PRMT3 10196 hgsc.bcm.edu hg19 11 20473685 20473685 + Missense_Mutation SNP C C T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . PRMT3 NM_005788 exon11 c.C1003T p.L335F TATTTTCTTCTGT . 91.0 36.0 73.0 0.0 . 50 . . Atlas-SNP OR4S2 219431 hgsc.bcm.edu hg19 11 55418847 55418847 + Silent SNP C C A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . OR4S2 NM_001004059 exon1 c.C468A p.I156I CATTATCCAAGTG . 176.0 79.0 152.0 0.0 . 89 . . Atlas-SNP AHNAK 79026 hgsc.bcm.edu hg19 11 62292058 62292058 + Silent SNP T T C novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . AHNAK NM_001620 exon5 c.A9831G p.K3277K TGGACCTTTTAAT . 92.0 43.0 67.0 0.0 . 532 . . Atlas-SNP UBTFL1 642623 hgsc.bcm.edu hg19 11 89819558 89819558 + Missense_Mutation SNP G G T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . . NM_001143975 exon1 c.G441T p.Q147H GAAACAGAAATAT . 236.0 39.0 172.0 0.0 . . . . Atlas-SNP DYNC2H1 79659 hgsc.bcm.edu hg19 11 103039593 103039593 + Missense_Mutation SNP G G T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . DYNC2H1 NM_001377 exon32 c.G4872T p.W1624C AGACTGGGCTTGG . 114.0 12.0 95.0 0.0 . 246 . . Atlas-SNP OR8B4 283162 hgsc.bcm.edu hg19 11 124294728 124294728 + Missense_Mutation SNP G G C novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . OR8B4 NM_001005196 exon1 c.C40G p.L14V CCACAAGGATAAA . 68.0 31.0 64.0 0.0 . 60 . . Atlas-SNP GYS2 2998 hgsc.bcm.edu hg19 12 21713390 21713390 + Missense_Mutation SNP T T C novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . GYS2 NM_021957 exon8 c.A1099G p.I367V GCATAATGAAAAA . 87.0 30.0 71.0 0.0 . 110 . . Atlas-SNP KRT6A 3853 hgsc.bcm.edu hg19 12 52886815 52886815 + Missense_Mutation SNP C C T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . KRT6A NM_005554 exon1 c.G158A p.G53E CCAGCTCCTCCAC . 194.0 77.0 166.0 0.0 . 89 . . Atlas-SNP TDG 6996 hgsc.bcm.edu hg19 12 104379458 104379458 + Nonsense_Mutation SNP G G T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . TDG NM_003211 exon9 c.G1042T p.E348X TACGGAGAAAATC . 131.0 16.0 94.0 0.0 . 43 . . Atlas-SNP OAS3 4940 hgsc.bcm.edu hg19 12 113405240 113405240 + Missense_Mutation SNP T T C novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . OAS3 NM_006187 exon13 c.T2707C p.S903P TCTGGCTCCAGGC . 129.0 57.0 83.0 0.0 . 63 . . Atlas-SNP SETD8 387893 hgsc.bcm.edu hg19 12 123874057 123874057 + Missense_Mutation SNP G G C novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . SETD8 NM_020382 exon2 c.G88C p.E30Q GGCCCGGAGATGG . 13.0 7.0 0.0 0.0 . 35 . . Atlas-SNP TMEM132B 114795 hgsc.bcm.edu hg19 12 126135432 126135432 + Missense_Mutation SNP C C T rs149523266 bycluster;by1000genomes;alternate_allele TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . TMEM132B NM_052907 exon7 c.C1832T p.P611L AGGAGCCGAAAAT . 132.0 61.0 97.0 0.0 . 207 . C|0.999;A|0.001 Atlas-SNP DDHD1 80821 hgsc.bcm.edu hg19 14 53619420 53619420 + Missense_Mutation SNP C C T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . DDHD1 NM_001160147 exon1 c.G397A p.G133S CGCCGCCGCCCCC . 75.0 4.0 89.0 0.0 . 202 . . Atlas-SNP VSX2 338917 hgsc.bcm.edu hg19 14 74727333 74727333 + Missense_Mutation SNP C C T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . VSX2 NM_182894 exon5 c.C797T p.S266L CCGAGTCGGGGAG . 384.0 33.0 337.0 0.0 . 32 . . Atlas-SNP AHNAK2 113146 hgsc.bcm.edu hg19 14 105413863 105413863 + Missense_Mutation SNP G G A rs371234619 alternate_allele TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . AHNAK2 NM_138420 exon7 c.C7925T p.T2642I TTGGCTGTCACAC . 144.0 16.0 110.0 0.0 . 719 . . Atlas-SNP HAUS2 55142 hgsc.bcm.edu hg19 15 42858922 42858922 + Missense_Mutation SNP G G T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . HAUS2 NM_018097 exon6 c.G616T p.A206S ATATTAGCTGAAG . 142.0 43.0 118.0 0.0 . 12 . . Atlas-SNP C16orf71 146562 hgsc.bcm.edu hg19 16 4787921 4787921 + Missense_Mutation SNP G G C novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . C16orf71 NM_139170 exon3 c.G250C p.A84P TGGGTCGCTGCAG . 89.0 35.0 105.0 0.0 . 46 . . Atlas-SNP PDZD9 255762 hgsc.bcm.edu hg19 16 21995781 21995781 + Missense_Mutation SNP T T C novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . PDZD9 NM_173806 exon3 c.A422G p.D141G TTAATGTCTTTTC . 131.0 23.0 125.0 0.0 . 18 . . Atlas-SNP CES1 1066 hgsc.bcm.edu hg19 16 55866943 55866943 + Missense_Mutation SNP C C T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . CES1 NM_001025195 exon1 c.G25A p.A9T GAGTGGCCAGGAT . 344.0 139.0 295.0 0.0 . 78 . . Atlas-SNP LCAT 3931 hgsc.bcm.edu hg19 16 67976468 67976468 + Silent SNP G G C novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . LCAT NM_000229 exon5 c.C546G p.R182R GAGCTTGCGGTAG . 145.0 45.0 144.0 0.0 . 31 . . Atlas-SNP PRPF8 10594 hgsc.bcm.edu hg19 17 1554097 1554097 + Silent SNP C C T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 PRPF8,NS,carcinoma,0,1 PRPF8 NM_006445 exon43 c.G7007A p.X2336X AACGGTCAGGCAT . 49.0 6.0 67.0 0.0 . 169 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7574033 7574033 + Missense_Mutation SNP T T A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 TP53,NS,carcinoma,0,1 TP53 NM_000546 exon10 c.A994T p.I332F CACGGATCTGCAG . 78.0 20.0 92.0 0.0 . 33396 . . Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7577538 7577538 + Missense_Mutation SNP C C T rs11540652 bycluster TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 TP53_ENST00000545858,NS,adenocarcinoma,0,4 TP53 NM_000546 exon7 c.G743A p.R248Q GGCCTCCGGTTCA . 49.0 11.0 68.0 0.0 . 33396 . . Atlas-SNP KRT38 8687 hgsc.bcm.edu hg19 17 39594488 39594488 + Silent SNP G G A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . KRT38 NM_006771 exon6 c.C1098T p.I366I GTTGCTGATGAGG . 82.0 29.0 49.0 0.0 . 63 . . Atlas-SNP SMG8 55181 hgsc.bcm.edu hg19 17 57289158 57289158 + Silent SNP A A G novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . SMG8 NM_018149 exon1 c.A1746G p.S582S TCACTCATTACCT . 36.0 17.0 29.0 0.0 . 79 . . Atlas-SNP CD300E 342510 hgsc.bcm.edu hg19 17 72613261 72613261 + Silent SNP G G A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . CD300E NM_181449 exon2 c.C384T p.S128S ACCTGGGGAAACA . 90.0 39.0 69.0 0.0 . 70 . . Atlas-SNP ITGB4 3691 hgsc.bcm.edu hg19 17 73738810 73738810 + Missense_Mutation SNP G G T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . ITGB4 NM_001005731 exon25 c.G2930T p.R977L GCCGCCGCCTGGT . 47.0 16.0 28.0 0.0 . 165 . . Atlas-SNP ACAA2 10449 hgsc.bcm.edu hg19 18 47329197 47329197 + Missense_Mutation SNP T T C novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . ACAA2 NM_006111 exon2 c.A43G p.T15A AGGGCGTTCGCTT . 179.0 54.0 95.0 0.0 . 29 . . Atlas-SNP VPS4B 9525 hgsc.bcm.edu hg19 18 61067937 61067937 + Splice_Site SNP C C A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . VPS4B NM_004869 exon7 c.485-1G>T . TCTTGCCTAAAAT . 106.0 32.0 85.0 0.0 . 33 . . Atlas-SNP SHD 56961 hgsc.bcm.edu hg19 19 4288320 4288320 + Missense_Mutation SNP T T G novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . SHD NM_020209 exon5 c.T797G p.L266R TGCGGCTCAGTGA . 109.0 31.0 76.0 0.0 . 33 . . Atlas-SNP KANK2 25959 hgsc.bcm.edu hg19 19 11304443 11304443 + Missense_Mutation SNP G G C novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . KANK2 NM_015493 exon2 c.C313G p.R105G AGCCACGGCCGCA . 242.0 34.0 129.0 0.0 . 47 . . Atlas-SNP KANK2 25959 hgsc.bcm.edu hg19 19 11304444 11304444 + Silent SNP G G A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . KANK2 NM_015493 exon2 c.C312T p.G104G GCCACGGCCGCAG . 241.0 31.0 128.0 0.0 . 47 . . Atlas-SNP CILP2 148113 hgsc.bcm.edu hg19 19 19654688 19654688 + Missense_Mutation SNP G G T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . CILP2 NM_153221 exon8 c.G1334T p.R445I TGGAGAGAAGGGA . 123.0 11.0 121.0 0.0 . 84 . . Atlas-SNP ZNF43 7594 hgsc.bcm.edu hg19 19 21992333 21992333 + Missense_Mutation SNP G G T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . ZNF43 NM_001256653 exon4 c.C533A p.T178N TTTTCAGTATGGC . 123.0 50.0 101.0 0.0 . 152 . . Atlas-SNP ZNF728 388523 hgsc.bcm.edu hg19 19 23158365 23158365 + Missense_Mutation SNP A A G novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . . NM_001267716 exon4 c.T1774C p.Y592H ATTTGTAGAATTT . 23.0 9.0 11.0 0.0 . . . . Atlas-SNP FLT3LG 2323 hgsc.bcm.edu hg19 19 49983824 49983824 + Missense_Mutation SNP A A T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . FLT3LG NM_001204503 exon7 c.A676T p.S226C GTCCCCAGTCCCC . 80.0 34.0 84.0 0.0 . 22 . . Atlas-SNP ZNF444 55311 hgsc.bcm.edu hg19 19 56669904 56669904 + Silent SNP G G A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . ZNF444 NM_001253792 exon4 c.G339A p.V113V GAGGGTGCCTCAG . 195.0 8.0 139.0 0.0 . 15 . . Atlas-SNP SEC23B 10483 hgsc.bcm.edu hg19 20 18491519 18491519 + Missense_Mutation SNP C C T rs121918222 bycluster TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . SEC23B NM_032985 exon2 c.C40T p.R14W GAAGAACGGGATG . 302.0 14.0 167.0 0.0 . 70 . C|1.000;T|0.000 Atlas-SNP SOGA1 140710 hgsc.bcm.edu hg19 20 35414900 35414900 + Silent SNP G G T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . SOGA1 NM_080627 exon15 c.C4974A p.P1658P GCTGGGGGGGAGT . 37.0 13.0 28.0 0.0 . 136 . . Atlas-SNP PSMG1 8624 hgsc.bcm.edu hg19 21 40549463 40549463 + Silent SNP T T C novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . PSMG1 NM_003720 exon6 c.A690G p.A230A CAGAATTGCTGGG . 89.0 39.0 78.0 0.0 . 11 . . Atlas-SNP MYO18B 84700 hgsc.bcm.edu hg19 22 26298630 26298630 + Missense_Mutation SNP G G A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . MYO18B NM_032608 exon30 c.G4874A p.G1625D AGAAGGGTCTCCG . 100.0 11.0 78.0 0.0 . 322 . . Atlas-SNP DMD 1756 hgsc.bcm.edu hg19 X 32429887 32429887 + Silent SNP T T C novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . DMD NM_004006 exon30 c.A4215G p.Q1405Q AGGCATTTGAGCT . 70.0 21.0 37.0 0.0 . 2127 . . Atlas-SNP MAP7D3 79649 hgsc.bcm.edu hg19 X 135318419 135318419 + Silent SNP G G A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . MAP7D3 NM_024597 exon7 c.C720T p.A240A CCTTTCGGCTTGT . 60.0 6.0 61.0 0.0 . 102 . . Atlas-SNP ATP2B3 492 hgsc.bcm.edu hg19 X 152815622 152815622 + Missense_Mutation SNP A A C novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . ATP2B3 NM_001001344 exon10 c.A1701C p.E567D CCCGGAAGACAAG . 95.0 83.0 69.0 0.0 . 552 . . Atlas-SNP GRB14 2888 hgsc.bcm.edu hg19 2 165350963 165350964 + Frame_Shift_Ins INS - - T novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . GRB14 NM_004490 exon13 c.1454_1455insA p.I485fs . . 295.0 51.0 209.0 0.0 . 73 . . Atlas-INDEL SRSF11 9295 hgsc.bcm.edu hg19 1 70716344 70716345 + Frame_Shift_Ins INS - - A novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . SRSF11 NM_004768 exon13 c.1311_1312insA p.E437fs . . 234.0 89.0 181.0 0.0 . 68 . . Atlas-INDEL LCAT 3931 hgsc.bcm.edu hg19 16 67976467 67976468 + Frame_Shift_Ins INS - - CC novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . LCAT NM_000229 exon5 c.547_548insGG p.K183fs . . 152.0 45.0 146.0 0.0 . 31 . . Atlas-INDEL CRH 1392 hgsc.bcm.edu hg19 8 67089349 67089363 + In_Frame_Del DEL GCAGCAGCAGCTGCT GCAGCAGCAGCTGCT - novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 GCAGCAGCAGCTGCT GCAGCAGCAGCTGCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . CRH NM_000756 exon2 c.351_365del p.117_122del . . 54.0 20.0 51.0 0.0 . 8 . . Atlas-INDEL AGA 175 hgsc.bcm.edu hg19 4 178355598 178355598 + Frame_Shift_Del DEL G G - novel TCGA-XR-A8TG-01A-11D-A35Z-10 TCGA-XR-A8TG-10A-01D-A35Z-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 81b78069-7129-494c-9209-e00ecf75cced 110d65ad-5d6c-4db6-beb6-720ee7d7b871 . AGA NM_000027 exon7 c.745delG p.D249fs . . 386.0 119.0 197.0 0.0 . 39 . . Atlas-INDEL