Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm AGTRAP 57085 hgsc.bcm.edu hg19 1 11808647 11808647 + Missense_Mutation SNP G G T rs141868096 alternate_allele TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . AGTRAP NM_020350 exon4 c.G344T p.G115V GCGGGGGTGAGCT . 26.0 11.0 31.0 0.0 . 9 . G|1.000;A|0.000 Atlas-SNP TMEM39B 55116 hgsc.bcm.edu hg19 1 32566142 32566142 + Silent SNP C C T novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . TMEM39B NM_018056 exon8 c.C1215T p.D405D CTCTGACGTCTCC . 88.0 9.0 113.0 0.0 . 66 . . Atlas-SNP INADL 10207 hgsc.bcm.edu hg19 1 62299331 62299331 + Silent SNP C C T novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . INADL NM_176877 exon17 c.C1986T p.D662D GGTTGACCACAAT . 195.0 36.0 164.0 0.0 . 179 . . Atlas-SNP ADCY10 55811 hgsc.bcm.edu hg19 1 167825481 167825481 + Missense_Mutation SNP C C T novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . ADCY10 NM_018417 exon17 c.G2093A p.G698D ACTGCACCAATGA . 278.0 13.0 188.0 0.0 . 175 . . Atlas-SNP ZNF648 127665 hgsc.bcm.edu hg19 1 182026606 182026606 + Silent SNP T T C novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . ZNF648 NM_001009992 exon2 c.A540G p.V180V CGTGTCTACACTT . 83.0 25.0 73.0 0.0 . 111 . . Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73613036 73613036 + Missense_Mutation SNP G G C novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . ALMS1 NM_015120 exon1 c.G40C p.E14Q CTGGAGGAGGAGG . 230.0 12.0 181.0 0.0 . 384 . . Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73613037 73613037 + Missense_Mutation SNP A A T novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . ALMS1 NM_015120 exon1 c.A41T p.E14V TGGAGGAGGAGGA . 231.0 19.0 178.0 0.0 . 384 . . Atlas-SNP RGPD4 285190 hgsc.bcm.edu hg19 2 108453116 108453116 + Missense_Mutation SNP T T C novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . RGPD4 NM_182588 exon2 c.T131C p.L44P ATGATCTTGCTAA . 383.0 103.0 381.0 1.0 . 112 . . Atlas-SNP PPIG 9360 hgsc.bcm.edu hg19 2 170471112 170471112 + Missense_Mutation SNP G G A novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . PPIG NM_004792 exon9 c.G425A p.G142E TTTTTGGACAAGT . 403.0 132.0 420.0 1.0 . 100 . . Atlas-SNP KIF1A 547 hgsc.bcm.edu hg19 2 241700204 241700204 + Missense_Mutation SNP G G T novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . KIF1A NM_001244008 exon25 c.C2322A p.D774E CAGCAGGTCGGGT . 291.0 107.0 278.0 1.0 . 152 . . Atlas-SNP TRPC3 7222 hgsc.bcm.edu hg19 4 122833233 122833233 + Nonsense_Mutation SNP G G A novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . TRPC3 NM_001130698 exon5 c.C1357T p.R453X GGCTTCGCAGAAT . 53.0 17.0 68.0 0.0 . 201 . . Atlas-SNP CDH9 1007 hgsc.bcm.edu hg19 5 26915756 26915756 + Missense_Mutation SNP G G A novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . CDH9 NM_016279 exon3 c.C505T p.P169S TTTCAGGAACACT . 160.0 75.0 97.0 0.0 . 305 . . Atlas-SNP ITGA2 3673 hgsc.bcm.edu hg19 5 52370309 52370309 + Splice_Site SNP T T C novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . ITGA2 NM_002203 exon21 c.2664+2T>C . AACAGGTACAACT . 137.0 6.0 91.0 0.0 . 211 . . Atlas-SNP CATSPER3 347732 hgsc.bcm.edu hg19 5 134343827 134343827 + Missense_Mutation SNP A A T novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . CATSPER3 NM_178019 exon4 c.A673T p.T225S TTGGCCACGGTAC . 137.0 10.0 101.0 0.0 . 38 . . Atlas-SNP PCDHA4 56144 hgsc.bcm.edu hg19 5 140188506 140188506 + Silent SNP C C T novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . PCDHA4 NM_031500 exon1 c.C1734T p.S578S AGTGAGCGAGCTG . 65.0 17.0 77.0 0.0 . 419 . . Atlas-SNP GRIA1 2890 hgsc.bcm.edu hg19 5 153190694 153190694 + Missense_Mutation SNP G G A novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . GRIA1 NM_001258021 exon16 c.G2660A p.R887Q ATGGTCGGGTGGT . 255.0 66.0 232.0 0.0 . 321 . . Atlas-SNP SYNGAP1 8831 hgsc.bcm.edu hg19 6 33412344 33412344 + Missense_Mutation SNP T T C novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . SYNGAP1 NM_006772 exon16 c.T3532C p.Y1178H GAAGAGTACAAGC . 102.0 29.0 96.0 0.0 . 202 . . Atlas-SNP SNAP91 9892 hgsc.bcm.edu hg19 6 84303250 84303250 + Missense_Mutation SNP G G A novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . SNAP91 NM_001242792 exon17 c.C1643T p.T548I GAGGTGGTGGTAG . 142.0 43.0 138.0 0.0 . 199 . . Atlas-SNP FUCA2 2519 hgsc.bcm.edu hg19 6 143823511 143823511 + Missense_Mutation SNP G G A novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . FUCA2 NM_032020 exon4 c.C944T p.T315I TCAATTGTAAGAT . 113.0 39.0 113.0 0.0 . 28 . . Atlas-SNP C7orf10 79783 hgsc.bcm.edu hg19 7 40234654 40234654 + Missense_Mutation SNP T T C novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . C7orf10 NM_001193313 exon6 c.T500C p.I167T GTTCCATCACAGG . 67.0 15.0 56.0 0.0 . 99 . . Atlas-SNP ZNF804B 219578 hgsc.bcm.edu hg19 7 88966180 88966180 + Nonsense_Mutation SNP T T A novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . ZNF804B NM_181646 exon4 c.T3884A p.L1295X CTACATTGTTTGG . 120.0 25.0 131.0 0.0 . 322 . . Atlas-SNP TSGA13 114960 hgsc.bcm.edu hg19 7 130356523 130356523 + Silent SNP A A G novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . TSGA13 NM_052933 exon7 c.T636C p.H212H TCTCTCATGGACT . 109.0 41.0 92.0 0.0 . 35 . . Atlas-SNP PODXL 5420 hgsc.bcm.edu hg19 7 131241029 131241029 + Silent SNP G G C novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . PODXL NM_001018111 exon1 c.C90G p.P30P CTGGGAGGGCGAC . 119.0 13.0 101.0 0.0 . 53 . . Atlas-SNP PTP4A3 11156 hgsc.bcm.edu hg19 8 142432342 142432342 + Missense_Mutation SNP T T C novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . PTP4A3 NM_032611 exon1 c.T2C p.M1T GCGCCATGGCTCG . 127.0 45.0 112.0 0.0 . 19 . . Atlas-SNP SCRIB 23513 hgsc.bcm.edu hg19 8 144873558 144873558 + Splice_Site SNP C C T novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . SCRIB NM_182706 exon37 c.4822+1G>A . AACTCACCAGGGC . 228.0 145.0 265.0 0.0 . 192 . . Atlas-SNP A1CF 29974 hgsc.bcm.edu hg19 10 52601663 52601663 + Missense_Mutation SNP T T A novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . A1CF NM_001198820 exon6 c.A348T p.E116D CTTGGCTTCCACT . 72.0 28.0 85.0 0.0 . 190 . . Atlas-SNP PRKG1 5592 hgsc.bcm.edu hg19 10 54042052 54042052 + Missense_Mutation SNP T T C novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . PRKG1 NM_006258 exon14 c.T1685C p.L562P GAATCCTAATGTA . 137.0 49.0 140.0 0.0 . 167 . . Atlas-SNP SLIT1 6585 hgsc.bcm.edu hg19 10 98924583 98924583 + Missense_Mutation SNP G G A novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . SLIT1 NM_003061 exon2 c.C262T p.R88W GCACCCGCAGCTG . 69.0 18.0 52.0 0.0 . 154 . . Atlas-SNP SMPD1 6609 hgsc.bcm.edu hg19 11 6411944 6411944 + Missense_Mutation SNP T T C novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . SMPD1 NM_000543 exon1 c.T116C p.L39P TGGCGCTGGCGCT . 117.0 39.0 114.0 0.0 . 108 . . Atlas-SNP EHF 26298 hgsc.bcm.edu hg19 11 34680176 34680176 + Missense_Mutation SNP G G A novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . EHF NM_001206616 exon8 c.G770A p.G257D CTGAGGGCGTCTT . 156.0 45.0 144.0 0.0 . 38 . . Atlas-SNP SF3B2 10992 hgsc.bcm.edu hg19 11 65828119 65828119 + Missense_Mutation SNP A A G novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . SF3B2 NM_006842 exon14 c.A1696G p.I566V ATTGACATCGACT . 144.0 49.0 136.0 0.0 . 85 . . Atlas-SNP MYO7A 4647 hgsc.bcm.edu hg19 11 76909563 76909563 + Missense_Mutation SNP G G A novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 MYO7A,NS,carcinoma,0,1 MYO7A NM_000260 exon34 c.G4465A p.V1489I AACGACGTCATCG . 44.0 15.0 54.0 0.0 . 164 . . Atlas-SNP APOA4 337 hgsc.bcm.edu hg19 11 116692001 116692001 + Missense_Mutation SNP G G C novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . APOA4 NM_000482 exon3 c.C773G p.A258G GCACTGGCCGAGA . 40.0 18.0 61.0 0.0 . 51 . . Atlas-SNP LDHB 3945 hgsc.bcm.edu hg19 12 21799847 21799847 + Missense_Mutation SNP A A C novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . LDHB NM_002300 exon3 c.T233G p.I78S GCCACAATTTTAG . 62.0 17.0 55.0 0.0 . 47 . . Atlas-SNP R3HDM2 22864 hgsc.bcm.edu hg19 12 57674222 57674222 + Silent SNP C C T novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . R3HDM2 NM_014925 exon12 c.G1221A p.Q407Q CTGCTGCTGTTGC . 79.0 5.0 64.0 0.0 . 125 . . Atlas-SNP FAM216A 29902 hgsc.bcm.edu hg19 12 110924510 110924510 + Missense_Mutation SNP G G A novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . . NM_013300 exon5 c.G608A p.R203K CAGTGAGAAACAA . 119.0 26.0 81.0 0.0 . . . . Atlas-SNP KL 9365 hgsc.bcm.edu hg19 13 33591317 33591317 + Missense_Mutation SNP G G A novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . KL NM_004795 exon1 c.G739A p.G247S TGGCACGGCTACG . 66.0 20.0 36.0 0.0 . 106 . . Atlas-SNP NFATC4 4776 hgsc.bcm.edu hg19 14 24845611 24845611 + Missense_Mutation SNP C C T novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . NFATC4 NM_001198967 exon10 c.C2357T p.P786L CCTACCCCTCCTA . 127.0 23.0 101.0 0.0 . 115 . . Atlas-SNP GPHN 10243 hgsc.bcm.edu hg19 14 67525478 67525478 + Silent SNP T T A novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . GPHN NM_020806 exon11 c.T1119A p.L373L GGTGCTTGGGACA . 51.0 17.0 45.0 0.0 . 79 . . Atlas-SNP CIITA 4261 hgsc.bcm.edu hg19 16 10989526 10989526 + Missense_Mutation SNP A A T rs200879588 alternate_allele TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . CIITA NM_000246 exon3 c.A200T p.E67V TCCCAGAACCCGA . 120.0 32.0 121.0 0.0 . 92 . A|0.999;G|0.001 Atlas-SNP POLR3E 55718 hgsc.bcm.edu hg19 16 22325438 22325438 + Missense_Mutation SNP A A G novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . POLR3E NM_001258033 exon8 c.A511G p.K171E GATGTTAAGCAGA . 79.0 4.0 67.0 0.0 . 62 . . Atlas-SNP ATMIN 23300 hgsc.bcm.edu hg19 16 81075037 81075037 + Missense_Mutation SNP G G A novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . ATMIN NM_015251 exon2 c.G413A p.C138Y AAGGCTGCCCCAG . 267.0 122.0 374.0 0.0 . 50 . . Atlas-SNP EPN2 22905 hgsc.bcm.edu hg19 17 19186882 19186882 + Silent SNP C C G novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . EPN2 NM_148921 exon3 c.C450G p.T150T CAAAACCAAAGAG . 92.0 26.0 88.0 0.0 . 52 . . Atlas-SNP NF1 4763 hgsc.bcm.edu hg19 17 29588781 29588781 + Missense_Mutation SNP G G A novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . NF1 NM_001042492 exon35 c.G4630A p.A1544T CTTCTTGCATACC . 304.0 86.0 192.0 0.0 . 1586 . . Atlas-SNP SUZ12 23512 hgsc.bcm.edu hg19 17 30321616 30321616 + Missense_Mutation SNP A A G novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . SUZ12 NM_015355 exon13 c.A1471G p.I491V GTTTCTATCAATG . 126.0 60.0 84.0 0.0 . 61 . . Atlas-SNP PSMC5 5705 hgsc.bcm.edu hg19 17 61908427 61908427 + Missense_Mutation SNP G G A novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . PSMC5 NM_002805 exon8 c.G711A p.M237I TGTCATGGCACGG . 109.0 45.0 74.0 0.0 . 41 . . Atlas-SNP EEF2 1938 hgsc.bcm.edu hg19 19 3980917 3980917 + Missense_Mutation SNP G G C novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . EEF2 NM_001961 exon8 c.C1072G p.L358V AGGGCAGGTGGAT . 62.0 18.0 39.0 0.0 . 57 . . Atlas-SNP ARHGEF18 23370 hgsc.bcm.edu hg19 19 7528790 7528790 + Silent SNP A A C novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . ARHGEF18 NM_001130955 exon12 c.A2158C p.R720R CCGCCCAGGAGGG . 231.0 12.0 208.0 0.0 . 129 . . Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9075042 9075042 + Missense_Mutation SNP G G C novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . MUC16 NM_024690 exon3 c.C12404G p.T4135S AGAGTGGTCTTCT . 131.0 6.0 154.0 0.0 . 4315 . . Atlas-SNP MYT1 4661 hgsc.bcm.edu hg19 20 62843408 62843408 + Silent SNP C C T novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . MYT1 NM_004535 exon9 c.C1434T p.A478A CTTAGCCATGCAT . 26.0 9.0 31.0 0.0 . 152 . . Atlas-SNP PLAC4 191585 hgsc.bcm.edu hg19 21 42551226 42551226 + Silent SNP G G C novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . . NM_182832 exon1 c.C330G p.P110P GATTGAGGGTGTC . 143.0 40.0 145.0 0.0 . . . . Atlas-SNP PLA2G6 8398 hgsc.bcm.edu hg19 22 38525570 38525570 + Splice_Site SNP C C G novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . PLA2G6 NM_001199562 exon9 c.1078-1G>C . GTCTTTCTGTTGG . 119.0 33.0 129.0 0.0 . 54 . . Atlas-SNP CACNA1I 8911 hgsc.bcm.edu hg19 22 40080333 40080333 + Missense_Mutation SNP G G A novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . CACNA1I NM_021096 exon36 c.G5857A p.A1953T CCGGATGCCTCCA . 80.0 18.0 80.0 0.0 . 264 . . Atlas-SNP MXRA5 25878 hgsc.bcm.edu hg19 X 3235461 3235461 + Silent SNP G G C novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . MXRA5 NM_015419 exon6 c.C6261G p.T2087T GATCTGGGTACCG . 61.0 34.0 69.0 0.0 . 815 . . Atlas-SNP NXF5 55998 hgsc.bcm.edu hg19 X 101092559 101092559 + Silent SNP A A T novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . NXF5 NM_032946 exon15 c.T987A p.P329P AGTTTCAGGCAAT . 249.0 177.0 241.0 0.0 . 65 . . Atlas-SNP LENG9 94059 hgsc.bcm.edu hg19 19 54974339 54974339 + Frame_Shift_Del DEL C C - novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . LENG9 NM_198988 exon1 c.438delC p.R146fs . . 92.0 31.0 92.0 0.0 . 46 . . Atlas-INDEL RBL2 5934 hgsc.bcm.edu hg19 16 53487516 53487517 + Frame_Shift_Ins INS - - A novel TCGA-ZP-A9CZ-01A-11D-A382-10 TCGA-ZP-A9CZ-10A-01D-A385-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 6d66d5db-1afc-4794-a21f-f14592ef7ea3 c0e67191-8b7f-4693-b0aa-d62f5f00ad42 . RBL2 NM_005611 exon6 c.919_920insA p.E307fs . . 145.0 71.0 224.0 0.0 . 115 . . Atlas-INDEL