Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ST6GALNAC5	81849	hgsc.bcm.edu	hg19	1	77334301	77334301	+	Silent	SNP	A	A	G	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	ST6GALNAC5	NM_030965	exon2	c.A135G	p.Q45Q	GCAGCAACAGCAG	.	156.0	8.0	141.0	0.0	.	59	.	.	Atlas-SNP
ARHGEF11	9826	hgsc.bcm.edu	hg19	1	156918128	156918128	+	Silent	SNP	G	G	A	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	ARHGEF11	NM_198236	exon23	c.C2088T	p.T696T	GCTGGAGGTAGAG	.	146.0	22.0	113.0	0.0	.	168	.	.	Atlas-SNP
DCAF6	55827	hgsc.bcm.edu	hg19	1	167944101	167944101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	DCAF6	NM_001198956	exon4	c.A286G	p.N96D	CGAGCAAACATAT	.	590.0	299.0	431.0	0.0	.	99	.	.	Atlas-SNP
KIFAP3	22920	hgsc.bcm.edu	hg19	1	170003616	170003616	+	Silent	SNP	A	A	T	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	KIFAP3	NM_014970	exon7	c.T639A	p.L213L	AGTAATAAGTCCA	.	561.0	133.0	438.0	0.0	.	102	.	.	Atlas-SNP
NFASC	23114	hgsc.bcm.edu	hg19	1	204985578	204985578	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	NFASC	NM_001005388	exon30	c.T3634C	p.Y1212H	GGCCAGTACACGG	.	203.0	50.0	154.0	0.0	.	396	.	.	Atlas-SNP
DSTYK	25778	hgsc.bcm.edu	hg19	1	205131199	205131199	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	DSTYK	NM_199462	exon6	c.A1783G	p.S595G	GGGAACTATTGAG	.	209.0	55.0	133.0	0.0	.	87	.	.	Atlas-SNP
MAL	4118	hgsc.bcm.edu	hg19	2	95719156	95719156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	MAL	NM_002371	exon4	c.G418A	p.V140M	CTCTACGTGGTCC	.	71.0	47.0	63.0	0.0	.	21	.	.	Atlas-SNP
CCDC13	152206	hgsc.bcm.edu	hg19	3	42750482	42750482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	CCDC13	NM_144719	exon16	c.G2138T	p.G713V	TGCTTGCCTGTCT	.	34.0	11.0	30.0	0.0	.	71	.	.	Atlas-SNP
CP	1356	hgsc.bcm.edu	hg19	3	148925166	148925166	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	CP	NM_000096	exon5	c.T1020G	p.N340K	GTTTAGATTCTGA	.	112.0	34.0	107.0	0.0	.	112	.	.	Atlas-SNP
LSG1	55341	hgsc.bcm.edu	hg19	3	194369468	194369468	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	LSG1	NM_018385	exon11	c.A1485T	p.R495S	ATCCTCTCTAGGC	.	108.0	35.0	107.0	0.0	.	38	.	.	Atlas-SNP
FAM193A	8603	hgsc.bcm.edu	hg19	4	2664933	2664933	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	FAM193A	NM_001256667	exon11	c.A1190C	p.E397A	CGAAGGAAGATGG	.	312.0	176.0	472.0	0.0	.	103	.	.	Atlas-SNP
ENPEP	2028	hgsc.bcm.edu	hg19	4	111397874	111397874	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	ENPEP	NM_001977	exon1	c.T304C	p.Y102H	GTCCACTACGACC	.	57.0	29.0	93.0	0.0	.	149	.	.	Atlas-SNP
EXOC3	11336	hgsc.bcm.edu	hg19	5	457080	457080	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	EXOC3	NM_007277	exon5	c.G1123A	p.V375M	CCACACGTGGTCT	.	233.0	147.0	123.0	0.0	.	54	.	.	Atlas-SNP
IRX1	79192	hgsc.bcm.edu	hg19	5	3596440	3596440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	IRX1	NM_024337	exon1	c.C221A	p.P74H	GCGCGCCCAACTA	.	92.0	12.0	35.0	0.0	.	106	.	.	Atlas-SNP
TRIO	7204	hgsc.bcm.edu	hg19	5	14304637	14304637	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	TRIO	NM_007118	exon8	c.A1436G	p.D479G	TGCAGGACCTAGA	.	292.0	51.0	150.0	0.0	.	305	.	.	Atlas-SNP
PCDHB5	26167	hgsc.bcm.edu	hg19	5	140515199	140515199	+	Silent	SNP	T	T	A	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	PCDHB5	NM_015669	exon1	c.T183A	p.T61T	GGCCACTCGGGGC	.	101.0	38.0	160.0	0.0	.	184	.	.	Atlas-SNP
HIST1H4G	8369	hgsc.bcm.edu	hg19	6	26247104	26247104	+	Silent	SNP	A	A	G	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	HIST1H4G	NM_003547	exon1	c.T102C	p.T34T	CCGGATAGTGCAC	.	98.0	35.0	76.0	0.0	.	18	.	.	Atlas-SNP
MDC1	9656	hgsc.bcm.edu	hg19	6	30672288	30672288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	MDC1_ENST00000376406,bladder,carcinoma,0,2	MDC1	NM_014641	exon10	c.G4672T	p.G1558C	TCCTGCCCCTAGT	.	111.0	14.0	144.0	1.0	.	218	.	.	Atlas-SNP
MDC1	9656	hgsc.bcm.edu	hg19	6	30672323	30672323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	MDC1	NM_014641	exon10	c.C4637T	p.P1546L	GTGACAGGTTGGT	.	146.0	32.0	147.0	0.0	.	218	.	.	Atlas-SNP
MDC1	9656	hgsc.bcm.edu	hg19	6	30672332	30672332	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	MDC1	NM_014641	exon10	c.C4628G	p.T1543R	TGGTCTGTGGAGG	.	151.0	39.0	146.0	0.0	.	218	.	.	Atlas-SNP
ASCC3	10973	hgsc.bcm.edu	hg19	6	101073148	101073148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	ASCC3	NM_006828	exon30	c.C4705T	p.R1569C	TAAGACGAGTTTG	.	146.0	43.0	153.0	0.0	.	205	.	.	Atlas-SNP
UNC93A	54346	hgsc.bcm.edu	hg19	6	167705003	167705003	+	Missense_Mutation	SNP	T	T	C	rs374730365		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	UNC93A,NS,carcinoma,0,1	UNC93A	NM_018974	exon1	c.T26C	p.L9P	ACGTCCTTGTGGT	.	79.0	30.0	73.0	0.0	.	66	.	.	Atlas-SNP
INTS1	26173	hgsc.bcm.edu	hg19	7	1510839	1510839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	INTS1	NM_001080453	exon46	c.A6277G	p.S2093G	CCGAGCTCATCAG	.	129.0	34.0	122.0	0.0	.	145	.	.	Atlas-SNP
MACC1	346389	hgsc.bcm.edu	hg19	7	20199854	20199854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	MACC1	NM_182762	exon5	c.G130T	p.D44Y	GCAAGTCTGGGTC	.	49.0	15.0	53.0	0.0	.	99	.	.	Atlas-SNP
CCDC129	223075	hgsc.bcm.edu	hg19	7	31618002	31618002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	CCDC129	NM_001257968	exon8	c.T1202C	p.L401S	AGAGCTTGTCTCA	.	138.0	56.0	86.0	0.0	.	127	.	.	Atlas-SNP
RELN	5649	hgsc.bcm.edu	hg19	7	103251167	103251167	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	RELN	NM_173054	exon22	c.A2983G	p.I995V	GCACTATGACTCT	.	57.0	19.0	59.0	0.0	.	593	.	.	Atlas-SNP
PRSS1	5644	hgsc.bcm.edu	hg19	7	142460804	142460804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	PRSS1	NM_002769	exon5	c.C677T	p.P226L	ACAAGCCTGGAGT	.	316.0	125.0	249.0	0.0	.	68	.	.	Atlas-SNP
TNFRSF10B	8795	hgsc.bcm.edu	hg19	8	22884792	22884792	+	Nonsense_Mutation	SNP	G	G	A	rs138183043		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	TNFRSF10B	NM_003842	exon7	c.C790T	p.R264X	CAGGTCGTTGTGA	.	59.0	28.0	65.0	0.0	.	34	.	G|1.000;A|0.000	Atlas-SNP
FBXO43	286151	hgsc.bcm.edu	hg19	8	101153292	101153292	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	FBXO43	NM_001029860	exon2	c.A1190C	p.E397A	TCCTCTTCTGTCT	.	109.0	31.0	103.0	0.0	.	155	.	.	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	hg19	8	113599446	113599446	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	CSMD3	NM_198123	exon23	c.C3734G	p.A1245G	TTCGTTGCAGATG	.	106.0	43.0	112.0	0.0	.	2325	.	.	Atlas-SNP
AKR1C3	8644	hgsc.bcm.edu	hg19	10	5136645	5136645	+	Silent	SNP	C	C	T	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	AKR1C3	NM_001253909	exon1	c.C9T	p.S3S	GGATTCCAAACAC	.	113.0	38.0	108.0	0.0	.	21	.	.	Atlas-SNP
PARD3	56288	hgsc.bcm.edu	hg19	10	34671515	34671515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	PARD3	NM_001184788	exon9	c.A1352G	p.Y451C	GTGTTATAACCAC	.	67.0	21.0	87.0	0.0	.	131	.	.	Atlas-SNP
TBC1D12	23232	hgsc.bcm.edu	hg19	10	96163102	96163102	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	TBC1D12	NM_015188	exon1	c.G732T	p.E244D	TCCCGAGGAGGGC	.	210.0	79.0	203.0	0.0	.	51	.	.	Atlas-SNP
TRPM5	29850	hgsc.bcm.edu	hg19	11	2434047	2434047	+	Silent	SNP	G	G	A	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	TRPM5	NM_014555	exon15	c.C2292T	p.P764P	CCCTGAGGGGCCC	.	148.0	44.0	153.0	0.0	.	86	.	.	Atlas-SNP
MS4A6A	64231	hgsc.bcm.edu	hg19	11	59949192	59949192	+	Silent	SNP	T	T	C	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	MS4A6A	NM_001247999	exon3	c.A93G	p.S31S	AGGTTGTGATGTC	.	173.0	60.0	185.0	0.0	.	85	.	.	Atlas-SNP
BAZ2A	11176	hgsc.bcm.edu	hg19	12	56993613	56993613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	BAZ2A	NM_013449	exon26	c.A5051G	p.K1684R	TCACCCTTCCGGC	.	100.0	29.0	89.0	0.0	.	263	.	.	Atlas-SNP
ELK3	2004	hgsc.bcm.edu	hg19	12	96641039	96641039	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	ELK3	NM_005230	exon3	c.G529T	p.E177X	CCCGTGGAAGAAG	.	90.0	38.0	90.0	0.0	.	36	.	.	Atlas-SNP
FZD10	11211	hgsc.bcm.edu	hg19	12	130648052	130648052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	FZD10	NM_007197	exon1	c.C565T	p.R189C	CCCGGGCGCGGCG	.	79.0	9.0	98.0	0.0	.	95	.	.	Atlas-SNP
MLH3	27030	hgsc.bcm.edu	hg19	14	75514826	75514826	+	Silent	SNP	A	A	G	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	MLH3	NM_014381	exon2	c.T1533C	p.P511P	CTGAAAAGGGCTT	.	90.0	4.0	129.0	0.0	.	200	.	.	Atlas-SNP
COG8	84342	hgsc.bcm.edu	hg19	16	69368984	69368984	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	COG8	NM_032382	exon3	c.A853G	p.I285V	TGATGATATCAAA	.	173.0	58.0	172.0	0.0	.	32	.	.	Atlas-SNP
ANKRD11	29123	hgsc.bcm.edu	hg19	16	89348575	89348575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	ANKRD11	NM_001256183	exon9	c.A4375G	p.K1459E	TCTTCTTCTCTTT	.	63.0	20.0	62.0	0.0	.	195	.	.	Atlas-SNP
TP53	7157	hgsc.bcm.edu	hg19	17	7577099	7577099	+	Missense_Mutation	SNP	C	C	T	rs121912660	bycluster	TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	TP53_ENST00000455263,NS,carcinoma,-1,147	TP53	NM_000546	exon8	c.G839A	p.R280K	CGGTCTCTCCCAG	.	70.0	34.0	112.0	0.0	.	33396	.	.	Atlas-SNP
POLG2	11232	hgsc.bcm.edu	hg19	17	62492649	62492649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	POLG2	NM_007215	exon1	c.G438T	p.R146S	AACTAACCTGAAG	.	247.0	114.0	165.0	0.0	.	29	.	.	Atlas-SNP
CEP95	90799	hgsc.bcm.edu	hg19	17	62522209	62522209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	CEP95	NM_138363	exon10	c.C1043T	p.A348V	CTACAGCCTCATC	.	183.0	33.0	140.0	0.0	.	103	.	.	Atlas-SNP
SLC25A41	284427	hgsc.bcm.edu	hg19	19	6427484	6427484	+	Missense_Mutation	SNP	C	C	T	rs370967882		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	SLC25A41	NM_173637	exon5	c.G653A	p.R218Q	CCCGTCCGACGCA	.	153.0	46.0	163.0	0.0	.	26	.	.	Atlas-SNP
CLEC4M	10332	hgsc.bcm.edu	hg19	19	7830731	7830731	+	Missense_Mutation	SNP	G	G	A	rs76899402	bycluster	TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	CLEC4M,colon,carcinoma,0,1	CLEC4M	NM_001144908	exon4	c.G422A	p.R141Q	TGACCCGGCTGAA	.	34.0	3.0	29.0	0.0	.	58	.	G|0.250;A|0.750	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	hg19	19	9060294	9060294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	MUC16	NM_024690	exon3	c.C27152A	p.S9051Y	ATTGTGGACTGAT	.	94.0	26.0	77.0	0.0	.	4315	.	.	Atlas-SNP
PPAN	56342	hgsc.bcm.edu	hg19	19	10221280	10221280	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	PPAN	NM_020230	exon10	c.G1021T	p.E341X	CAGCGGGAGGCCC	.	142.0	44.0	114.0	0.0	.	43	.	.	Atlas-SNP
ZNF493	284443	hgsc.bcm.edu	hg19	19	21607547	21607547	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	ZNF493	NM_001076678	exon4	c.C2086T	p.R696X	TTCTACCGATTCT	.	257.0	78.0	281.0	0.0	.	178	.	.	Atlas-SNP
ZNF227	7770	hgsc.bcm.edu	hg19	19	44740511	44740511	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	ZNF227	NM_182490	exon6	c.A1928T	p.Q643L	TCAGTCAGTCCTC	.	121.0	44.0	102.0	0.0	.	62	.	.	Atlas-SNP
PPP6R1	22870	hgsc.bcm.edu	hg19	19	55756722	55756722	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	PPP6R1	NM_014931	exon4	c.C463T	p.Q155X	TGTGCTGCAGCAG	.	70.0	16.0	69.0	0.0	.	63	.	.	Atlas-SNP
HNF4A	3172	hgsc.bcm.edu	hg19	20	43052656	43052656	+	Splice_Site	SNP	A	A	T	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	HNF4A	NM_001030004	exon8	c.827-2A>T	.	CATTGTAGATGCC	.	123.0	45.0	99.0	0.0	.	150	.	.	Atlas-SNP
TBX1	6899	hgsc.bcm.edu	hg19	22	19754071	19754071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	TBX1	NM_080647	exon9	c.G1169T	p.G390V	CGCCCGGAGGCCG	.	458.0	182.0	387.0	1.0	.	62	.	.	Atlas-SNP
C22orf15	150248	hgsc.bcm.edu	hg19	22	24106453	24106453	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	C22orf15	NM_182520	exon3	c.T119C	p.I40T	CGACCATTGCTCT	.	83.0	28.0	76.0	0.0	.	5	.	.	Atlas-SNP
REPIN1	29803	hgsc.bcm.edu	hg19	7	150068831	150068835	+	Frame_Shift_Del	DEL	CCACC	CCACC	-	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	CCACC	CCACC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	REPIN1	NM_001099695	exon3	c.671_675del	p.224_225del	.	.	59.0	17.0	59.0	0.0	.	74	.	.	Atlas-INDEL
CTTNBP2NL	55917	hgsc.bcm.edu	hg19	1	112999349	112999364	+	Frame_Shift_Del	DEL	CACTGTCTCCCAGCAG	CACTGTCTCCCAGCAG	-	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	CACTGTCTCCCAGCAG	CACTGTCTCCCAGCAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	CTTNBP2NL	NM_018704	exon6	c.1234_1249del	p.412_417del	.	.	60.0	28.0	103.0	0.0	.	65	.	.	Atlas-INDEL
ZNF318	24149	hgsc.bcm.edu	hg19	6	43316238	43316238	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	ZNF318	NM_014345	exon6	c.2897delC	p.A966fs	.	.	126.0	34.0	74.0	0.0	.	175	.	.	Atlas-INDEL
PRR21	643905	hgsc.bcm.edu	hg19	2	240982306	240982307	+	In_Frame_Ins	INS	-	-	AGG	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	PRR21	NM_001080835	exon1	c.94_95insCCT	p.S32delinsPS	.	.	100.0	11.0	72.0	0.0	.	53	.	.	Atlas-INDEL
NEFH	4744	hgsc.bcm.edu	hg19	22	29885571	29885572	+	In_Frame_Ins	INS	-	-	CCCCTGAGAAGGCCAAGT	novel		TCGA-ZP-A9D2-01A-11D-A382-10	TCGA-ZP-A9D2-10B-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f0eb7de5-8ea1-4f7c-82b5-c216979bef5b	517ff09a-3831-4085-b380-60a157b3840f	.	NEFH	NM_021076	exon4	c.1942_1943insCCCCTGAGAAGGCCAAGT	p.S648delinsSPEKAKS	.	.	266.0	39.0	241.0	0.0	.	178	.	.	Atlas-INDEL