Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
ARID1A	8289	hgsc.bcm.edu	hg19	1	27106649	27106649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	ARID1A,NS,adenocarcinoma,0,2	ARID1A	NM_006015	exon20	c.G6260A	p.G2087E	TGGACGGACTCCT	.	104.0	28.0	125.0	1.0	.	842	.	.	Atlas-SNP
CSMD2	114784	hgsc.bcm.edu	hg19	1	34204787	34204787	+	Silent	SNP	C	C	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	CSMD2	NM_052896	exon15	c.G2202A	p.L734L	CTCCTTCAGGACG	.	83.0	22.0	100.0	0.0	.	946	.	.	Atlas-SNP
KCNC4	3749	hgsc.bcm.edu	hg19	1	110766436	110766436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	KCNC4	NM_001039574	exon2	c.C1529T	p.S510F	GCAAGTCTGAGGA	.	118.0	31.0	114.0	0.0	.	113	.	.	Atlas-SNP
LCE1F	353137	hgsc.bcm.edu	hg19	1	152749007	152749007	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	LCE1F	NM_178354	exon1	c.T160A	p.S54T	TGTGGCTCCAGCT	.	285.0	17.0	320.0	0.0	.	42	.	.	Atlas-SNP
DUSP27	92235	hgsc.bcm.edu	hg19	1	167095804	167095804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	DUSP27	NM_001080426	exon5	c.C1436T	p.A479V	GGGACGCATGGAA	.	249.0	101.0	262.0	0.0	.	235	.	.	Atlas-SNP
DNAH14	127602	hgsc.bcm.edu	hg19	1	225373092	225373092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	DNAH14	NM_001373	exon36	c.T5569C	p.F1857L	GCAGACTTCTTAT	.	242.0	54.0	184.0	0.0	.	300	.	.	Atlas-SNP
TTC7A	57217	hgsc.bcm.edu	hg19	2	47184111	47184111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	TTC7A	NM_020458	exon3	c.A482G	p.Q161R	TGTATCAGATGCG	.	128.0	26.0	124.0	0.0	.	80	.	.	Atlas-SNP
CNGA3	1261	hgsc.bcm.edu	hg19	2	99013428	99013428	+	Missense_Mutation	SNP	G	G	A	rs376992789		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	CNGA3	NM_001298	exon8	c.G1795A	p.E599K	GCCCTGGAGGAGA	.	88.0	28.0	102.0	0.0	.	118	.	.	Atlas-SNP
REV1	51455	hgsc.bcm.edu	hg19	2	100058822	100058822	+	Silent	SNP	G	G	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	REV1	NM_001037872	exon5	c.C460T	p.L154L	CTGGCAGAGGATC	.	122.0	38.0	141.0	0.0	.	100	.	.	Atlas-SNP
BAZ2B	29994	hgsc.bcm.edu	hg19	2	160181399	160181399	+	Silent	SNP	T	T	C	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	BAZ2B	NM_013450	exon36	c.A6276G	p.K2092K	AACAAGTTTCAAG	.	349.0	14.0	379.0	0.0	.	196	.	.	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	hg19	2	170002368	170002368	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	LRP2	NM_004525	exon70	c.G12877C	p.E4293Q	ATACTTCTCCCTT	.	95.0	19.0	119.0	0.0	.	751	.	.	Atlas-SNP
FASTKD2	22868	hgsc.bcm.edu	hg19	2	207639082	207639082	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	FASTKD2	NM_001136193	exon7	c.A1388C	p.Y463S	ATACTTACTCTTC	.	108.0	27.0	82.0	0.0	.	49	.	.	Atlas-SNP
DOCK10	55619	hgsc.bcm.edu	hg19	2	225750511	225750511	+	Silent	SNP	C	C	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	DOCK10	NM_014689	exon7	c.G624A	p.K208K	GTAGCGCTTTTTG	.	91.0	28.0	108.0	0.0	.	308	.	.	Atlas-SNP
DIS3L2	129563	hgsc.bcm.edu	hg19	2	233114009	233114009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	DIS3L2	NM_152383	exon12	c.G1378A	p.D460N	ATGTCCGACAAGC	.	65.0	4.0	85.0	0.0	.	77	.	.	Atlas-SNP
FGD5	152273	hgsc.bcm.edu	hg19	3	14860691	14860691	+	Missense_Mutation	SNP	G	G	T	rs368711724	alternate_allele	TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	FGD5	NM_152536	exon1	c.G113T	p.R38L	ACGGGCGGCTGCC	.	199.0	64.0	259.0	0.0	.	248	.	.	Atlas-SNP
BTD	686	hgsc.bcm.edu	hg19	3	15686574	15686574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	BTD	NM_000060	exon4	c.C1211A	p.T404N	ATTTCACCCTGGT	.	121.0	27.0	99.0	0.0	.	49	.	.	Atlas-SNP
BTD	686	hgsc.bcm.edu	hg19	3	15686579	15686579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	BTD	NM_000060	exon4	c.G1216T	p.V406F	ACCCTGGTCCCTG	.	122.0	26.0	96.0	0.0	.	49	.	.	Atlas-SNP
PDCD6IP	10015	hgsc.bcm.edu	hg19	3	33883512	33883512	+	Silent	SNP	G	G	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	PDCD6IP	NM_001162429	exon10	c.G1320A	p.Q440Q	TGATCAGTTGATT	.	301.0	80.0	362.0	0.0	.	62	.	.	Atlas-SNP
RAD54L2	23132	hgsc.bcm.edu	hg19	3	51671348	51671348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	RAD54L2,NS,carcinoma,0,1	RAD54L2	NM_015106	exon10	c.G1511A	p.C504Y	ACTGGTGCATGGT	.	98.0	19.0	123.0	0.0	.	94	.	.	Atlas-SNP
ROBO2	6092	hgsc.bcm.edu	hg19	3	77612353	77612353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	ROBO2	NM_002942	exon11	c.A1555G	p.S519G	GATTTAAGTGACC	.	93.0	22.0	84.0	0.0	.	527	.	.	Atlas-SNP
EPHA3	2042	hgsc.bcm.edu	hg19	3	89480491	89480491	+	Silent	SNP	A	A	G	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	EPHA3	NM_005233	exon13	c.A2328G	p.E776E	CCCAGAAGCTGCT	.	133.0	16.0	143.0	0.0	.	501	.	.	Atlas-SNP
KALRN	8997	hgsc.bcm.edu	hg19	3	124160836	124160836	+	Silent	SNP	C	C	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	KALRN	NM_003947	exon19	c.C3237T	p.Y1079Y	CAAGTACATCCAC	.	405.0	93.0	404.0	0.0	.	556	.	.	Atlas-SNP
KALRN	8997	hgsc.bcm.edu	hg19	3	124210191	124210191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	KALRN	NM_003947	exon31	c.G4603A	p.E1535K	GTGACCGAGCACG	.	95.0	27.0	97.0	0.0	.	556	.	.	Atlas-SNP
ZNF732	654254	hgsc.bcm.edu	hg19	4	265506	265506	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	ZNF732	NM_001137608	exon3	c.T1137G	p.H379Q	ACTCTTATGTTTA	.	101.0	8.0	104.0	0.0	.	117	.	.	Atlas-SNP
HTT	3064	hgsc.bcm.edu	hg19	4	3208260	3208260	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	HTT	NM_002111	exon43	c.T5756G	p.L1919R	CGTGGCTCATTGT	.	129.0	43.0	131.0	0.0	.	221	.	.	Atlas-SNP
PCDH7	5099	hgsc.bcm.edu	hg19	4	30724272	30724272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	PCDH7_ENST00000361762,NS,carcinoma,0,1	PCDH7	NM_032457	exon1	c.G1228A	p.D410N	GAGAACGACAACG	.	306.0	89.0	303.0	0.0	.	215	.	.	Atlas-SNP
TMEM33	55161	hgsc.bcm.edu	hg19	4	41946817	41946817	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	TMEM33	NM_018126	exon5	c.G404C	p.G135A	CAAGGGGCTCAAA	.	73.0	21.0	105.0	0.0	.	17	.	.	Atlas-SNP
ODAM	54959	hgsc.bcm.edu	hg19	4	71067172	71067172	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	ODAM	NM_017855	exon7	c.T530C	p.I177T	GACAGATACCATT	.	618.0	152.0	681.0	1.0	.	38	.	.	Atlas-SNP
CCDC158	339965	hgsc.bcm.edu	hg19	4	77303825	77303825	+	Silent	SNP	A	A	G	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	CCDC158	NM_001042784	exon7	c.T852C	p.T284T	TTTCTCAGTAAGT	.	65.0	21.0	57.0	0.0	.	114	.	.	Atlas-SNP
HMGXB3	22993	hgsc.bcm.edu	hg19	5	149389802	149389802	+	Silent	SNP	A	A	G	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	HMGXB3	NM_014983	exon4	c.A441G	p.L147L	TCAGCTAGAGCTA	.	105.0	26.0	103.0	0.0	.	31	.	.	Atlas-SNP
STC2	8614	hgsc.bcm.edu	hg19	5	172752987	172752987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	STC2	NM_003714	exon2	c.G178A	p.A60T	CGCCAGCGTTGAC	.	147.0	30.0	172.0	0.0	.	59	.	.	Atlas-SNP
TBC1D22B	55633	hgsc.bcm.edu	hg19	6	37250093	37250093	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	TBC1D22B,NS,carcinoma,0,1	TBC1D22B	NM_017772	exon4	c.G554T	p.R185L	AAACCCGCCTAGA	.	133.0	42.0	104.0	0.0	.	37	.	.	Atlas-SNP
EPHA7	2045	hgsc.bcm.edu	hg19	6	93969086	93969086	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	EPHA7	NM_004440	exon10	c.G1910C	p.R637P	ATCACACGCTCAA	.	194.0	77.0	210.0	0.0	.	251	.	.	Atlas-SNP
FUT9	10690	hgsc.bcm.edu	hg19	6	96651187	96651187	+	Silent	SNP	C	C	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	FUT9,NS,carcinoma,0,1	FUT9	NM_006581	exon3	c.C156T	p.N52N	GAAAAACTTCTTT	.	126.0	8.0	101.0	0.0	.	79	.	.	Atlas-SNP
FUT9	10690	hgsc.bcm.edu	hg19	6	96652040	96652040	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	FUT9	NM_006581	exon3	c.G1009C	p.A337P	TGTTTGGCTTGCG	.	120.0	10.0	127.0	0.0	.	79	.	.	Atlas-SNP
ATG5	9474	hgsc.bcm.edu	hg19	6	106740950	106740950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	ATG5	NM_004849	exon4	c.C268T	p.L90F	ATGCAAGAAGATC	.	367.0	21.0	299.0	0.0	.	23	.	.	Atlas-SNP
ATG5	9474	hgsc.bcm.edu	hg19	6	106740951	106740951	+	Silent	SNP	A	A	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	ATG5	NM_004849	exon4	c.T267A	p.L89L	TGCAAGAAGATCA	.	365.0	21.0	298.0	0.0	.	23	.	.	Atlas-SNP
FNDC1	84624	hgsc.bcm.edu	hg19	6	159653741	159653741	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	FNDC1	NM_032532	exon11	c.C2197T	p.Q733X	CCCACCCAGCCAC	.	83.0	13.0	97.0	0.0	.	250	.	.	Atlas-SNP
TBP	6908	hgsc.bcm.edu	hg19	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	TBP	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	58.0	5.0	68.0	0.0	.	58	.	.	Atlas-SNP
NEUROD6	63974	hgsc.bcm.edu	hg19	7	31378068	31378068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	NEUROD6	NM_022728	exon2	c.C815T	p.S272F	TTCAGGGAAAATA	.	79.0	29.0	90.0	0.0	.	84	.	.	Atlas-SNP
WBSCR16	81554	hgsc.bcm.edu	hg19	7	74470082	74470082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	WBSCR16	NM_030798	exon9	c.G1157T	p.G386V	GTCAAGCCAAAGA	.	541.0	90.0	592.0	0.0	.	16	.	.	Atlas-SNP
GIGYF1	64599	hgsc.bcm.edu	hg19	7	100281944	100281944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	GIGYF1	NM_022574	exon14	c.A1646G	p.E549G	AGCCGCTCCTGGT	.	56.0	22.0	48.0	0.0	.	113	.	.	Atlas-SNP
KCNU1	157855	hgsc.bcm.edu	hg19	8	36664901	36664901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	KCNU1	NM_001031836	exon6	c.T589C	p.F197L	TTAAGGTTCCTAA	.	72.0	27.0	103.0	0.0	.	359	.	.	Atlas-SNP
APBA1	320	hgsc.bcm.edu	hg19	9	72131800	72131800	+	Silent	SNP	C	C	G	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	APBA1	NM_001163	exon2	c.G327C	p.A109A	GTCCTGCGCGCGC	.	20.0	9.0	27.0	0.0	.	96	.	.	Atlas-SNP
YME1L1	10730	hgsc.bcm.edu	hg19	10	27406578	27406578	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	YME1L1	NM_139312	exon16	c.T1817G	p.I606S	TATGCAATAATGG	.	115.0	14.0	100.0	0.0	.	71	.	.	Atlas-SNP
LIPF	8513	hgsc.bcm.edu	hg19	10	90438430	90438430	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	LIPF	NM_001198829	exon11	c.A1219T	p.K407X	GAAGATAAAAAGT	.	81.0	23.0	64.0	0.0	.	62	.	.	Atlas-SNP
ERLIN1	10613	hgsc.bcm.edu	hg19	10	101945277	101945277	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	.	NM_006459	exon1	c.A107T	p.Y36F	CTGTAGTACACAG	.	129.0	27.0	149.0	0.0	.	.	.	.	Atlas-SNP
C10orf88	80007	hgsc.bcm.edu	hg19	10	124712495	124712495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	C10orf88	NM_024942	exon2	c.G218A	p.C73Y	AGGAAGCAGGGGT	.	129.0	28.0	154.0	0.0	.	33	.	.	Atlas-SNP
FAM196A	642938	hgsc.bcm.edu	hg19	10	128973669	128973669	+	Silent	SNP	G	G	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	FAM196A	NM_001039762	exon4	c.C991T	p.L331L	TCCCCAGCCCCGG	.	66.0	14.0	64.0	0.0	.	55	.	.	Atlas-SNP
TRIM5	85363	hgsc.bcm.edu	hg19	11	5686301	5686301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	TRIM5	NM_033034	exon8	c.G1220T	p.G407V	TTAACTCCTTCCT	.	70.0	19.0	91.0	0.0	.	111	.	.	Atlas-SNP
NAV2	89797	hgsc.bcm.edu	hg19	11	19955146	19955146	+	Silent	SNP	G	G	C	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	NAV2	NM_001244963	exon8	c.G1425C	p.V475V	CACCGTGGGCCCT	.	129.0	41.0	133.0	0.0	.	255	.	.	Atlas-SNP
NAV2	89797	hgsc.bcm.edu	hg19	11	19955147	19955147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	NAV2	NM_001244963	exon8	c.G1426T	p.G476C	ACCGTGGGCCCTG	.	129.0	42.0	132.0	0.0	.	255	.	.	Atlas-SNP
OR4C15	81309	hgsc.bcm.edu	hg19	11	55322138	55322138	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	OR4C15	NM_001001920	exon1	c.T356A	p.L119Q	GCTTCCTGTCCTT	.	44.0	9.0	40.0	0.0	.	145	.	.	Atlas-SNP
SERPING1	710	hgsc.bcm.edu	hg19	11	57367761	57367761	+	Missense_Mutation	SNP	A	A	C	rs281875168	alternate_allele	TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	SERPING1,bladder,carcinoma,0,1	SERPING1	NM_001032295	exon2	c.A461C	p.Y154S	AGCTCTACCACGC	.	98.0	22.0	134.0	1.0	.	57	.	.	Atlas-SNP
OSBP	5007	hgsc.bcm.edu	hg19	11	59345631	59345631	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	OSBP	NM_002556	exon12	c.A2051T	p.N684I	AAAGGATTCCTTT	.	90.0	35.0	124.0	0.0	.	57	.	.	Atlas-SNP
CD6	923	hgsc.bcm.edu	hg19	11	60739363	60739363	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	CD6	NM_006725	exon1	c.G26T	p.G9V	TCACTGGATTGCT	.	37.0	14.0	48.0	0.0	.	122	.	.	Atlas-SNP
CNTN1	1272	hgsc.bcm.edu	hg19	12	41312465	41312465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	CNTN1	NM_001256063	exon4	c.G119T	p.G40V	GATTTGGACCAAT	.	320.0	70.0	286.0	0.0	.	207	.	.	Atlas-SNP
KRT73	319101	hgsc.bcm.edu	hg19	12	53012005	53012005	+	Missense_Mutation	SNP	C	C	A	rs199866943	by1000genomes;alternate_allele	TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	KRT73,colon,carcinoma,0,1	KRT73	NM_175068	exon1	c.G304T	p.G102W	TACCCCCGGGCGG	.	120.0	38.0	163.0	0.0	.	101	.	C|1.000;T|0.000	Atlas-SNP
KRT79	338785	hgsc.bcm.edu	hg19	12	53225249	53225249	+	Silent	SNP	C	C	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	KRT79	NM_175834	exon2	c.G639T	p.R213R	CCTCCCCCGCTCG	.	61.0	19.0	81.0	0.0	.	78	.	.	Atlas-SNP
E2F7	144455	hgsc.bcm.edu	hg19	12	77444515	77444515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	E2F7	NM_203394	exon4	c.G379T	p.V127F	CCCCAACAACATC	.	39.0	12.0	59.0	0.0	.	201	.	.	Atlas-SNP
STAB2	55576	hgsc.bcm.edu	hg19	12	104155082	104155082	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	STAB2	NM_017564	exon66	c.A7253C	p.E2418A	AGACGGAGACCAG	.	83.0	22.0	85.0	0.0	.	370	.	.	Atlas-SNP
TDG	6996	hgsc.bcm.edu	hg19	12	104378700	104378700	+	Splice_Site	SNP	T	T	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	TDG	NM_003211	exon8	c.964+2T>A	.	CCAAGGTATGTTA	.	151.0	43.0	116.0	0.0	.	43	.	.	Atlas-SNP
NOC4L	79050	hgsc.bcm.edu	hg19	12	132636036	132636036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	NOC4L,mucosal,malignant_melanoma,0,1	NOC4L	NM_024078	exon12	c.C1081T	p.P361S	CACCTCCCCGCCT	.	25.0	6.0	36.0	0.0	.	31	.	.	Atlas-SNP
ATP8A2	51761	hgsc.bcm.edu	hg19	13	26594029	26594029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	ATP8A2	NM_016529	exon37	c.G3473T	p.G1158V	CAGATGGGTATGC	.	68.0	21.0	109.0	0.0	.	181	.	.	Atlas-SNP
ELF1	1997	hgsc.bcm.edu	hg19	13	41507803	41507803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	ELF1	NM_172373	exon9	c.C1618T	p.R540C	AACTGCGAGGAGA	.	72.0	22.0	90.0	0.0	.	65	.	.	Atlas-SNP
ITGBL1	9358	hgsc.bcm.edu	hg19	13	102235651	102235651	+	Silent	SNP	T	T	C	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	ITGBL1,bladder,carcinoma,0,1	ITGBL1	NM_004791	exon6	c.T813C	p.C271C	TGAATGTGATGAG	.	104.0	26.0	146.0	0.0	.	83	.	.	Atlas-SNP
KLHL33	123103	hgsc.bcm.edu	hg19	14	20897109	20897109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	KLHL33	NM_001109997	exon4	c.C1501T	p.P501S	GCCTTGGCAGAGT	.	78.0	18.0	98.0	0.0	.	37	.	.	Atlas-SNP
AP4S1	11154	hgsc.bcm.edu	hg19	14	31554030	31554030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	AP4S1	NM_007077	exon6	c.G422T	p.C141F	AGACTTGCTTTTC	.	330.0	25.0	350.0	0.0	.	23	.	.	Atlas-SNP
ACTN1	87	hgsc.bcm.edu	hg19	14	69358837	69358837	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	ACTN1	NM_001102	exon10	c.C1019T	p.T340M	TGCAGCGTGTTGA	.	96.0	11.0	128.0	0.0	.	77	.	.	Atlas-SNP
PTPN21	11099	hgsc.bcm.edu	hg19	14	88967666	88967666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	PTPN21	NM_007039	exon7	c.G634A	p.E212K	TTCTCTCTACCTC	.	191.0	54.0	234.0	0.0	.	113	.	.	Atlas-SNP
DISP2	85455	hgsc.bcm.edu	hg19	15	40660759	40660759	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	DISP2	NM_033510	exon8	c.T2446C	p.C816R	GCACTCTGTCACC	.	58.0	11.0	63.0	0.0	.	86	.	.	Atlas-SNP
PLA2G4F	255189	hgsc.bcm.edu	hg19	15	42434382	42434382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	PLA2G4F	NM_213600	exon20	c.G2350A	p.E784K	TCTCCTCAGCTGT	.	92.0	29.0	112.0	0.0	.	75	.	.	Atlas-SNP
ADAL	161823	hgsc.bcm.edu	hg19	15	43643187	43643187	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	ADAL	NM_001159280	exon11	c.A740G	p.D247G	CTTATGACCAGCA	.	144.0	20.0	138.0	0.0	.	48	.	.	Atlas-SNP
SORD	6652	hgsc.bcm.edu	hg19	15	45361208	45361208	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	SORD	NM_003104	exon7	c.C744G	p.I248M	CACCATCGAGTGC	.	297.0	42.0	273.0	0.0	.	24	.	.	Atlas-SNP
STOML1	9399	hgsc.bcm.edu	hg19	15	74281023	74281023	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	STOML1	NM_001256672	exon4	c.C511G	p.Q171E	CGTTCTGGGCTGT	.	80.0	19.0	73.0	0.0	.	22	.	.	Atlas-SNP
ACAN	176	hgsc.bcm.edu	hg19	15	89398123	89398123	+	Missense_Mutation	SNP	G	G	C	rs191404107	by1000genomes;alternate_allele	TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	ACAN	NM_001135	exon12	c.G2307C	p.E769D	AACAGAGGAAAGT	.	135.0	11.0	177.0	0.0	.	220	.	G|0.999;A|0.001	Atlas-SNP
METTL22	79091	hgsc.bcm.edu	hg19	16	8722963	8722963	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	METTL22	NM_024109	exon3	c.A510C	p.R170S	CATCAGAATAGGT	.	43.0	11.0	66.0	0.0	.	23	.	.	Atlas-SNP
GRIN2A	2903	hgsc.bcm.edu	hg19	16	10274102	10274102	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	GRIN2A	NM_000833	exon3	c.G167T	p.G56V	TCGGGGCCCCACA	.	76.0	15.0	84.0	0.0	.	366	.	.	Atlas-SNP
C16orf58	64755	hgsc.bcm.edu	hg19	16	31519395	31519395	+	Silent	SNP	C	C	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	C16orf58	NM_022744	exon1	c.A300A	p.P100P	GCTGACCTGCACG	.	155.0	33.0	194.0	0.0	.	28	.	.	Atlas-SNP
FHOD1	29109	hgsc.bcm.edu	hg19	16	67281173	67281173	+	Silent	SNP	C	C	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	FHOD1	NM_013241	exon1	c.G141T	p.G47G	CAGCGCCCCGTCC	.	75.0	15.0	84.0	0.0	.	86	.	.	Atlas-SNP
MYH3	4621	hgsc.bcm.edu	hg19	17	10543991	10543991	+	Silent	SNP	C	C	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	MYH3	NM_002470	exon20	c.G2178T	p.L726L	GGCATTCAGCACT	.	60.0	16.0	64.0	0.0	.	227	.	.	Atlas-SNP
KIAA0100	9703	hgsc.bcm.edu	hg19	17	26970319	26970319	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	KIAA0100	NM_014680	exon4	c.G259T	p.A87S	ACAATGCCACATA	.	80.0	23.0	90.0	0.0	.	175	.	.	Atlas-SNP
C17orf50	146853	hgsc.bcm.edu	hg19	17	34091295	34091295	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	C17orf50	NM_145272	exon2	c.T283A	p.W95R	TGGGGCTGGCTCG	.	62.0	16.0	92.0	0.0	.	4	.	.	Atlas-SNP
ARHGAP27	201176	hgsc.bcm.edu	hg19	17	43474146	43474146	+	Silent	SNP	G	G	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	ARHGAP27	NM_199282	exon12	c.C939T	p.A313A	GCCCAGGGCGGGC	.	60.0	11.0	80.0	0.0	.	37	.	.	Atlas-SNP
HN1	51155	hgsc.bcm.edu	hg19	17	73132208	73132208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	HN1	NM_016185	exon5	c.G454A	p.V152I	CCAAGACGAGGCT	.	251.0	66.0	310.0	0.0	.	17	.	.	Atlas-SNP
C19orf21	126353	hgsc.bcm.edu	hg19	19	757270	757270	+	Silent	SNP	A	A	G	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	C19orf21	NM_173481	exon2	c.A324G	p.T108T	TCCAACATGGGCA	.	148.0	41.0	191.0	0.0	.	56	.	.	Atlas-SNP
MUM1	84939	hgsc.bcm.edu	hg19	19	1371003	1371003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	MUM1	NM_032853	exon12	c.G1915A	p.E639K	TACCAGGAGGTGG	.	86.0	7.0	75.0	0.0	.	54	.	.	Atlas-SNP
FUT3	2525	hgsc.bcm.edu	hg19	19	5844157	5844157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	FUT3	NM_001097640	exon3	c.G694A	p.G232R	TGGTCCCCTTGGG	.	203.0	59.0	228.0	0.0	.	30	.	.	Atlas-SNP
PEPD	5184	hgsc.bcm.edu	hg19	19	33892756	33892756	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	PEPD	NM_000285	exon12	c.G838T	p.E280X	AATACTCACCGCC	.	100.0	24.0	106.0	0.0	.	48	.	.	Atlas-SNP
SCN1B	6324	hgsc.bcm.edu	hg19	19	35521747	35521747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	SCN1B	NM_001037	exon1	c.T23C	p.V8A	CCTTAGTGGTCGG	.	126.0	11.0	170.0	0.0	.	32	.	.	Atlas-SNP
MARK4	57787	hgsc.bcm.edu	hg19	19	45790827	45790827	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	MARK4	NM_001199867	exon13	c.C1399T	p.R467X	GGGAGTCGAGGGC	.	371.0	86.0	416.0	0.0	.	132	.	.	Atlas-SNP
VN1R2	317701	hgsc.bcm.edu	hg19	19	53761659	53761659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	VN1R2	NM_173856	exon1	c.G31T	p.A11S	CCTTTTGCTTTGT	.	58.0	13.0	59.0	0.0	.	71	.	.	Atlas-SNP
LILRA2	11027	hgsc.bcm.edu	hg19	19	55087301	55087301	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	LILRA2	NM_001130917	exon6	c.C980A	p.S327X	CTCTCTCGGTGCA	.	102.0	25.0	84.0	0.0	.	99	.	.	Atlas-SNP
LILRA2	11027	hgsc.bcm.edu	hg19	19	55087318	55087318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	LILRA2	NM_001130917	exon6	c.A997G	p.T333A	GTCCCCACAGTAG	.	110.0	27.0	93.0	0.0	.	99	.	.	Atlas-SNP
CXorf22	170063	hgsc.bcm.edu	hg19	X	35969436	35969436	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	CXorf22	NM_152632	exon5	c.G845C	p.W282S	TAAATTGGGTGGC	.	201.0	110.0	242.0	0.0	.	272	.	.	Atlas-SNP
MAOB	4129	hgsc.bcm.edu	hg19	X	43698217	43698217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	MAOB	NM_000898	exon3	c.C176T	p.S59F	ACATAGGATCCTC	.	86.0	4.0	78.0	0.0	.	52	.	.	Atlas-SNP
AR	367	hgsc.bcm.edu	hg19	X	66766368	66766368	+	Silent	SNP	C	C	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	AR	NM_000044	exon1	c.C1380T	p.G460G	CGGCGGCGGCGGC	.	322.0	66.0	162.0	0.0	.	249	.	.	Atlas-SNP
SPRY3	10251	hgsc.bcm.edu	hg19	X	155004358	155004358	+	Silent	SNP	T	T	G	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	SPRY3	NM_005840	exon2	c.T825G	p.S275S	CTCTTCTGGTAGT	.	160.0	35.0	133.0	0.0	.	52	.	.	Atlas-SNP
ZNRF3	84133	hgsc.bcm.edu	hg19	22	29445468	29445469	+	Frame_Shift_Ins	INS	-	-	GGCCA	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	ZNRF3,caecum,carcinoma,0,1	ZNRF3	NM_001206998	exon8	c.1299_1300insGGCCA	p.C433fs	.	.	53.0	11.0	57.0	0.0	.	75	.	.	Atlas-INDEL
ALB	213	hgsc.bcm.edu	hg19	4	74276080	74276096	+	Frame_Shift_Del	DEL	AAGTGTGCCAGTCTCCA	AAGTGTGCCAGTCTCCA	-	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	AAGTGTGCCAGTCTCCA	AAGTGTGCCAGTCTCCA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	ALB	NM_000477	exon6	c.666_682del	p.222_228del	.	.	298.0	40.0	371.0	0.0	.	132	.	.	Atlas-INDEL
ADAM30	11085	hgsc.bcm.edu	hg19	1	120436590	120436591	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	ADAM30	NM_021794	exon1	c.2370_2371insA	p.K790fs	.	.	74.0	17.0	70.0	0.0	.	88	.	.	Atlas-INDEL
APOB	338	hgsc.bcm.edu	hg19	2	21236228	21236228	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	APOB	NM_000384	exon25	c.4021delA	p.T1341fs	.	.	136.0	26.0	122.0	0.0	.	761	.	.	Atlas-INDEL
AP2M1	1173	hgsc.bcm.edu	hg19	3	183898987	183899008	+	Frame_Shift_Del	DEL	AAGGCACAGCTGATGAAACAAG	AAGGCACAGCTGATGAAACAAG	-	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	AAGGCACAGCTGATGAAACAAG	AAGGCACAGCTGATGAAACAAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	.	AP2M1	NM_001025205	exon6	c.673_694del	p.225_232del	.	.	160.0	18.0	256.0	0.0	.	35	.	.	Atlas-INDEL
WDR73	84942	hgsc.bcm.edu	hg19	15	85186706	85186707	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-ZS-A9CD-01A-11D-A36X-10	TCGA-ZS-A9CD-10A-01D-A370-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	58e384ba-b93a-45d0-af93-821c3717e9ec	bf3a7873-31f2-4a59-9c3e-61836f34ab07	WDR73,NS,carcinoma,0,1	WDR73	NM_032856	exon8	c.1132_1133del	p.378_378del	.	.	87.0	28.0	78.0	0.0	.	15	.	.	Atlas-INDEL