Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	dbSNP_AF	Algorithm
PTCHD2	57540	hgsc.bcm.edu	37	1	11596435	11596435	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	PTCHD2	NM_020780	exon21	c.G3871C	p.V1291L	GTGGGCGTGGCCA	.	47.0	25.0	29.0	0.0	.	193	.	.	Atlas-SNP
TRMT13	54482	hgsc.bcm.edu	37	1	100605738	100605738	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	.	NM_019083	exon5	c.G325C	p.V109L	ATATAGGTTCCAA	.	72.0	28.0	69.0	0.0	.	.	.	.	Atlas-SNP
F5	2153	hgsc.bcm.edu	37	1	169521852	169521852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	F5,larynx,carcinoma,-2,1	F5	NM_000130	exon8	c.G1239T	p.M413I	TTCTTTCATATTG	.	180.0	48.0	120.0	0.0	.	301	1	.	Atlas-SNP
ZBTB37	84614	hgsc.bcm.edu	37	1	173840092	173840092	+	Silent	SNP	A	A	G	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	ZBTB37	NM_032522	exon3	c.A729G	p.V243V	AGCAGTACACATC	.	172.0	54.0	146.0	0.0	.	38	.	.	Atlas-SNP
C1orf106	55765	hgsc.bcm.edu	37	1	200870236	200870236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	C1orf106	NM_018265	exon5	c.C766T	p.R256W	GTCGAGCGGCGGC	.	75.0	27.0	57.0	0.0	.	59	.	.	Atlas-SNP
TSNAX	7257	hgsc.bcm.edu	37	1	231700450	231700450	+	Silent	SNP	T	T	C	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	TSNAX	NM_005999	exon6	c.T672C	p.V224V	TCAGGTTTATGAT	.	241.0	105.0	240.0	0.0	.	14	.	.	Atlas-SNP
SMYD3	64754	hgsc.bcm.edu	37	1	246498775	246498775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	SMYD3	NM_001167740	exon3	c.A230G	p.K77R	GCTTTTTTCTATT	.	87.0	45.0	62.0	0.0	.	77	.	.	Atlas-SNP
PXDN	7837	hgsc.bcm.edu	37	2	1653379	1653379	+	Missense_Mutation	SNP	C	C	T	rs374347969		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	PXDN	NM_012293	exon17	c.G2173A	p.A725T	GGTGGGCGGTACA	.	169.0	70.0	172.0	0.0	.	255	.	.	Atlas-SNP
PROM2	150696	hgsc.bcm.edu	37	2	95941842	95941842	+	Silent	SNP	C	C	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	PROM2	NM_001165977	exon3	c.C459A	p.A153A	CGCGGCCCTCATG	.	84.0	38.0	108.0	0.0	.	78	.	.	Atlas-SNP
GLI2	2736	hgsc.bcm.edu	37	2	121745822	121745822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	GLI2	NM_005270	exon13	c.G2332A	p.G778R	GGCGGCGGGCCCG	.	695.0	304.0	791.0	0.0	.	187	.	.	Atlas-SNP
LCT	3938	hgsc.bcm.edu	37	2	136570094	136570094	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	LCT	NM_002299	exon7	c.A2140T	p.N714Y	CATGGTTCACGTG	.	264.0	83.0	203.0	0.0	.	309	.	.	Atlas-SNP
UBR3	130507	hgsc.bcm.edu	37	2	170936401	170936401	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	UBR3	NM_172070	exon37	c.G5277C	p.Q1759H	TTTTCAGTACTAC	.	145.0	64.0	132.0	0.0	.	182	.	.	Atlas-SNP
AGPS	8540	hgsc.bcm.edu	37	2	178257523	178257523	+	Silent	SNP	G	G	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	AGPS	NM_003659	exon1	c.G6T	p.A2A	CATGGCGGAGGCG	.	61.0	23.0	66.0	0.0	.	56	.	.	Atlas-SNP
OSBPL6	114880	hgsc.bcm.edu	37	2	179197657	179197657	+	Silent	SNP	T	T	C	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	OSBPL6	NM_001201482	exon8	c.T546C	p.Y182Y	GTTGTATCGTCAG	.	200.0	79.0	167.0	0.0	.	178	.	.	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179479290	179479290	+	Silent	SNP	A	A	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	TTN	NM_001267550	exon261	c.T48951A	p.T16317T	AACAATAGTCACT	.	106.0	40.0	87.0	0.0	.	18412	.	.	Atlas-SNP
BARD1	580	hgsc.bcm.edu	37	2	215674279	215674279	+	Silent	SNP	C	C	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	BARD1	NM_000465	exon1	c.G15T	p.R5R	CGGCTGCCGATTA	.	123.0	46.0	93.0	0.0	.	138	.	.	Atlas-SNP
ASIC4	55515	hgsc.bcm.edu	37	2	220396805	220396805	+	Silent	SNP	G	G	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	.	NM_182847	exon3	c.G1191A	p.G397G	GTTCGGGGTGTCC	.	144.0	25.0	173.0	0.0	.	.	.	.	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	37	3	4716014	4716014	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	ITPR1	NM_001099952	exon22	c.A2585T	p.K862M	AGAATAAGCTTAC	.	121.0	11.0	112.0	0.0	.	659	.	.	Atlas-SNP
SCN11A	11280	hgsc.bcm.edu	37	3	38962724	38962724	+	Silent	SNP	G	G	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	SCN11A,NS,carcinoma,0,1	SCN11A	NM_014139	exon6	c.C735A	p.A245A	TAGCAAGGCCCCC	.	206.0	78.0	161.0	1.0	.	296	1	.	Atlas-SNP
XIRP1	165904	hgsc.bcm.edu	37	3	39228541	39228541	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	XIRP1	NM_001198621	exon2	c.A2396T	p.E799V	CAGAGCTCCCCTG	.	169.0	15.0	130.0	0.0	.	173	.	.	Atlas-SNP
SCAP	22937	hgsc.bcm.edu	37	3	47459072	47459072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	SCAP	NM_012235	exon17	c.C2692T	p.R898W	CCGCCCGGTGCCG	.	231.0	113.0	252.0	0.0	.	88	.	.	Atlas-SNP
OR5H14	403273	hgsc.bcm.edu	37	3	97869095	97869095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	OR5H14	NM_001005514	exon1	c.T866C	p.I289T	CCATGATCTACAG	.	172.0	70.0	162.0	0.0	.	56	.	.	Atlas-SNP
MED12L	116931	hgsc.bcm.edu	37	3	150876484	150876484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	MED12L	NM_053002	exon6	c.G735A	p.M245I	AGGAATGTTAGAA	.	190.0	109.0	135.0	0.0	.	271	.	.	Atlas-SNP
UGT2B7	7364	hgsc.bcm.edu	37	4	69962260	69962260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	UGT2B7	NM_001074	exon1	c.G22T	p.V8L	ACTTCAGTAATTT	.	103.0	30.0	81.0	0.0	.	79	.	.	Atlas-SNP
AFP	174	hgsc.bcm.edu	37	4	74303922	74303922	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	AFP	NM_001134	exon3	c.G169C	p.E57Q	GTTCAAGAAGCCA	.	125.0	55.0	131.0	0.0	.	60	.	.	Atlas-SNP
CASP3	836	hgsc.bcm.edu	37	4	185550586	185550586	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	CASP3	NM_004346	exon8	c.A674C	p.Q225P	GCATACTGTTTCA	.	186.0	112.0	123.0	0.0	.	27	.	.	Atlas-SNP
C1QTNF3	114899	hgsc.bcm.edu	37	5	34043130	34043130	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	C1QTNF3	NM_181435	exon1	c.A101C	p.N34T	ACTTTATTAGTTC	.	57.0	29.0	86.0	0.0	.	31	.	.	Atlas-SNP
NRG2	9542	hgsc.bcm.edu	37	5	139266992	139266992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	NRG2,NS,carcinoma,0,1	NRG2	NM_013982	exon2	c.C805A	p.R269S	ACCAACGGTAGGA	.	129.0	66.0	128.0	0.0	.	69	1	.	Atlas-SNP
FBXO38	81545	hgsc.bcm.edu	37	5	147813252	147813252	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	FBXO38	NM_030793	exon17	c.A2584T	p.I862F	TGTGGAATCACAG	.	107.0	100.0	170.0	0.0	.	115	.	.	Atlas-SNP
CSF1R	1436	hgsc.bcm.edu	37	5	149435893	149435893	+	Silent	SNP	C	C	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	CSF1R	NM_005211	exon18	c.G2331A	p.R777R	CACGTCCCGGTGG	.	64.0	52.0	129.0	0.0	.	250	.	.	Atlas-SNP
GRIA1	2890	hgsc.bcm.edu	37	5	153054114	153054114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	GRIA1	NM_001258021	exon6	c.G784A	p.G262S	GTGACAGGTTTCC	.	330.0	135.0	309.0	0.0	.	321	.	.	Atlas-SNP
DOCK2	1794	hgsc.bcm.edu	37	5	169101345	169101345	+	Nonsense_Mutation	SNP	C	C	G	rs35393134	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	DOCK2	NM_004946	exon6	c.C366G	p.Y122X	GATGTACGATCTG	.	110.0	59.0	124.0	0.0	.	389	.	C|0.978;T|0.022	Atlas-SNP
HRH2	3274	hgsc.bcm.edu	37	5	175112488	175112488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	HRH2	NM_001131055	exon3	c.G1153A	p.A385T	TCATTTGCAAACA	.	183.0	85.0	235.0	0.0	.	108	.	.	Atlas-SNP
PRRC2A	7916	hgsc.bcm.edu	37	6	31593819	31593819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	PRRC2A	NM_004638	exon9	c.C862T	p.P288S	GCGGGCCCCCGAG	.	169.0	61.0	112.0	0.0	.	152	.	.	Atlas-SNP
VARS	7407	hgsc.bcm.edu	37	6	31760169	31760169	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	VARS	NM_006295	exon5	c.G786C	p.E262D	CCTCACCTCCCCT	.	235.0	44.0	87.0	0.0	.	76	.	.	Atlas-SNP
TRERF1	55809	hgsc.bcm.edu	37	6	42214272	42214272	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	TRERF1	NM_033502	exon14	c.G2667C	p.K889N	GGTCCACTTGTCC	.	89.0	40.0	83.0	0.0	.	124	.	.	Atlas-SNP
CUL9	23113	hgsc.bcm.edu	37	6	43192005	43192005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	CUL9	NM_015089	exon41	c.G7376T	p.G2459V	CCTCAGGGCCAGA	.	128.0	25.0	105.0	0.0	.	248	.	.	Atlas-SNP
IRAK1BP1	134728	hgsc.bcm.edu	37	6	79577582	79577582	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	IRAK1BP1	NM_001010844	exon1	c.C289T	p.Q97X	ATCACGCAGAGCC	.	389.0	305.0	179.0	0.0	.	18	.	.	Atlas-SNP
KIAA1009	22832	hgsc.bcm.edu	37	6	84925113	84925113	+	Silent	SNP	C	C	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	KIAA1009,NS,carcinoma,0,1	KIAA1009	NM_014895	exon5	c.G390A	p.E130E	TTCTTTCTCCTCT	.	42.0	36.0	49.0	0.0	.	119	1	.	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	37	7	82583509	82583509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	Q9Y6V0-3,NS,carcinoma,0,3	PCLO	NM_014510	exon5	c.G6760A	p.D2254N	TACCATCTGGTGG	.	64.0	35.0	60.0	0.0	.	1506	3	.	Atlas-SNP
PHYHIP	9796	hgsc.bcm.edu	37	8	22085742	22085742	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	PHYHIP	NM_014759	exon2	c.G129C	p.K43N	CTCCTTCTTGTTA	.	74.0	64.0	143.0	0.0	.	24	.	.	Atlas-SNP
RNF19A	25897	hgsc.bcm.edu	37	8	101276968	101276968	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	RNF19A	NM_015435	exon7	c.A1237C	p.N413H	CCAAATTCCGTTT	.	128.0	55.0	97.0	0.0	.	67	.	.	Atlas-SNP
NCALD	83988	hgsc.bcm.edu	37	8	102701577	102701577	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	NCALD,right_upper_lobe,carcinoma,0,1	NCALD	NM_001040627	exon6	c.G542T	p.R181L	AGGAGGCGCACAA	.	133.0	51.0	154.0	0.0	.	16	1	.	Atlas-SNP
ZFPM2	23414	hgsc.bcm.edu	37	8	106331209	106331209	+	Silent	SNP	C	C	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	ZFPM2	NM_012082	exon1	c.C40A	p.R14R	ATCAAACGTAAGT	.	345.0	169.0	331.0	0.0	.	219	.	.	Atlas-SNP
NTRK2	4915	hgsc.bcm.edu	37	9	87635185	87635185	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	NTRK2	NM_006180	exon20	c.T2237G	p.F746C	GGAAATTCACGAC	.	136.0	71.0	176.0	0.0	.	331	.	.	Atlas-SNP
OR1K1	392392	hgsc.bcm.edu	37	9	125563246	125563246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	OR1K1	NM_080859	exon1	c.T845C	p.V282A	CTGTAGTCACCCC	.	52.0	22.0	55.0	0.0	.	34	.	.	Atlas-SNP
RABGAP1	23637	hgsc.bcm.edu	37	9	125719407	125719407	+	Silent	SNP	A	A	G	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	RABGAP1	NM_012197	exon2	c.A69G	p.E23E	TAGTGAAGATTTT	.	121.0	59.0	102.0	0.0	.	164	.	.	Atlas-SNP
FPGS	2356	hgsc.bcm.edu	37	9	130565239	130565239	+	Silent	SNP	A	A	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	FPGS	NM_004957	exon1	c.A36T	p.L12L	CGCTCTATTCCTG	.	47.0	29.0	44.0	0.0	.	30	.	.	Atlas-SNP
GDF2	2658	hgsc.bcm.edu	37	10	48416487	48416487	+	Silent	SNP	G	G	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	GDF2	NM_016204	exon1	c.C207T	p.S69S	GTTAAGGCTGCGC	.	124.0	63.0	145.0	0.0	.	77	.	.	Atlas-SNP
ATAD1	84896	hgsc.bcm.edu	37	10	89544307	89544307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	ATAD1	NM_032810	exon5	c.G503T	p.G168V	GATTCTCCATACC	.	106.0	45.0	89.0	0.0	.	32	.	.	Atlas-SNP
PAX2	5076	hgsc.bcm.edu	37	10	102584454	102584454	+	Silent	SNP	C	C	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	PAX2	NM_003987	exon9	c.C1038A	p.P346P	CGTGCCCCCCACT	.	51.0	16.0	61.0	0.0	.	83	.	.	Atlas-SNP
TNNI2	7136	hgsc.bcm.edu	37	11	1862321	1862321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	TNNI2,NS,carcinoma,-1,1	TNNI2	NM_001145841	exon5	c.C337T	p.R113W	CCACTGCGGAGGG	.	86.0	39.0	102.0	0.0	.	24	1	.	Atlas-SNP
KCNA4	3739	hgsc.bcm.edu	37	11	30033969	30033969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	KCNA4	NM_002233	exon2	c.G257A	p.R86K	TGTCGCCTCCTCC	.	46.0	18.0	54.0	0.0	.	158	.	.	Atlas-SNP
ELF5	2001	hgsc.bcm.edu	37	11	34527248	34527248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	ELF5,colon,carcinoma,+1,1	ELF5	NM_198381	exon2	c.T79C	p.C27R	GATCGCAGAAGGA	.	116.0	48.0	134.0	0.0	.	21	1	.	Atlas-SNP
OR8H2	390151	hgsc.bcm.edu	37	11	55872886	55872886	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	OR8H2	NM_001005200	exon1	c.A368T	p.Y123F	ATCGCTATGCAGC	.	107.0	47.0	128.0	0.0	.	117	.	.	Atlas-SNP
PIWIL4	143689	hgsc.bcm.edu	37	11	94308255	94308255	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	PIWIL4	NM_152431	exon3	c.G257C	p.C86S	GTATCTGTACCAG	.	199.0	81.0	150.0	0.0	.	70	.	.	Atlas-SNP
AMOTL1	154810	hgsc.bcm.edu	37	11	94602440	94602440	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	AMOTL1	NM_130847	exon12	c.T2566C	p.S856P	CTGTCCTCCATAG	.	114.0	5.0	122.0	0.0	.	95	.	.	Atlas-SNP
GLI1	2735	hgsc.bcm.edu	37	12	57865281	57865281	+	Missense_Mutation	SNP	G	G	A	rs368469814		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	GLI1	NM_005269	exon12	c.G2758A	p.A920T	GCCCCCGCCCAGG	.	113.0	33.0	87.0	0.0	.	141	.	.	Atlas-SNP
MYBPC1	4604	hgsc.bcm.edu	37	12	102045035	102045035	+	Silent	SNP	C	C	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	MYBPC1	NM_206819	exon16	c.C1390T	p.L464L	ACACCTCTGACTG	.	133.0	53.0	150.0	0.0	.	235	.	.	Atlas-SNP
COL4A1	1282	hgsc.bcm.edu	37	13	110807652	110807652	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	COL4A1_ENST00000375815,NS,carcinoma,-1,2	COL4A1	NM_001845	exon50	c.G4733A	p.W1578X	CCGATCCACAGCG	.	164.0	89.0	200.0	1.0	.	372	2	.	Atlas-SNP
OR4M1	441670	hgsc.bcm.edu	37	14	20248678	20248678	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	OR4M1,NS,carcinoma,-1,1	OR4M1	NM_001005500	exon1	c.T197C	p.L66P	CTAATCTGGCCCT	.	144.0	59.0	147.0	0.0	.	104	1	.	Atlas-SNP
RORA	6095	hgsc.bcm.edu	37	15	60824052	60824052	+	Splice_Site	SNP	T	T	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	RORA	NM_002943	exon4	c.272-2A>T	.	TTGAGCTGCAACA	.	185.0	84.0	165.0	0.0	.	114	.	.	Atlas-SNP
HERC1	8925	hgsc.bcm.edu	37	15	63966786	63966786	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	HERC1	NM_003922	exon38	c.T7601A	p.I2534K	TTTGGTATCAGCA	.	173.0	85.0	182.0	0.0	.	624	.	.	Atlas-SNP
SEMA7A	8482	hgsc.bcm.edu	37	15	74706891	74706891	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	SEMA7A	NM_003612	exon10	c.A1291G	p.T431A	CACCTGTAGTTAG	.	192.0	86.0	247.0	0.0	.	58	.	.	Atlas-SNP
SEMA7A	8482	hgsc.bcm.edu	37	15	74706913	74706913	+	Silent	SNP	G	G	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	SEMA7A	NM_003612	exon10	c.C1269A	p.T423T	ATGAAAGGTCTCC	.	202.0	91.0	261.0	0.0	.	58	.	.	Atlas-SNP
CSK	1445	hgsc.bcm.edu	37	15	75094691	75094691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	CSK	NM_001127190	exon14	c.C1190A	p.P397H	TCGTCCCTCGGGT	.	50.0	25.0	48.0	0.0	.	43	.	.	Atlas-SNP
CES1	1066	hgsc.bcm.edu	37	16	55853489	55853489	+	Silent	SNP	T	T	C	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	CES1_ENST00000360526,NS,adenoma,-1,1	CES1	NM_001025195	exon7	c.A864G	p.R288R	CTTCTGTCGCAGG	.	88.0	7.0	71.0	2.0	.	78	1	.	Atlas-SNP
MYH1	4619	hgsc.bcm.edu	37	17	10404770	10404770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	MYH1,NS,carcinoma,-1,1	MYH1	NM_005963	exon27	c.C3395T	p.S1132F	GCCCGGGAGGCCC	.	62.0	49.0	98.0	0.0	.	403	1	.	Atlas-SNP
MYH2	4620	hgsc.bcm.edu	37	17	10438678	10438678	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	MYH2	NM_017534	exon18	c.A1979G	p.N660S	TTCAAATTCTCCT	.	68.0	58.0	147.0	0.0	.	390	.	.	Atlas-SNP
MYOCD	93649	hgsc.bcm.edu	37	17	12649346	12649346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	MYOCD	NM_001146312	exon9	c.C1082A	p.S361Y	TCTCTTCTTTCAA	.	65.0	52.0	105.0	0.0	.	291	.	.	Atlas-SNP
LGALS9	3965	hgsc.bcm.edu	37	17	25975942	25975942	+	Missense_Mutation	SNP	G	G	T	rs373192382	alternate_allele	TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	LGALS9	NM_009587	exon11	c.G1002T	p.R334S	CCTGAGGAACCTG	.	892.0	401.0	1057.0	0.0	.	29	.	.	Atlas-SNP
NUFIP2	57532	hgsc.bcm.edu	37	17	27620945	27620945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	NUFIP2,right_lower_lobe,carcinoma,0,1	NUFIP2	NM_020772	exon1	c.C133A	p.H45N	GGTGGTGGTTGTG	.	111.0	5.0	99.0	0.0	.	60	1	.	Atlas-SNP
FNDC8	54752	hgsc.bcm.edu	37	17	33448911	33448911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	FNDC8,NS,carcinoma,-1,1	FNDC8	NM_017559	exon1	c.A199G	p.I67V	GATACCATCAACC	.	103.0	44.0	137.0	1.0	.	28	1	.	Atlas-SNP
NBR1	4077	hgsc.bcm.edu	37	17	41346472	41346472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	NBR1	NM_031862	exon13	c.G1630A	p.E544K	GCCAGTGAGAGGG	.	256.0	115.0	293.0	1.0	.	55	.	.	Atlas-SNP
TOB1	10140	hgsc.bcm.edu	37	17	48940589	48940589	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	TOB1	NM_005749	exon2	c.A790T	p.T264S	CAGAGGTTTTCTG	.	111.0	24.0	98.0	0.0	.	40	.	.	Atlas-SNP
KIF19	124602	hgsc.bcm.edu	37	17	72349069	72349069	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	KIF19	NM_153209	exon15	c.C2090G	p.A697G	ACAGCGCCCTCCC	.	135.0	34.0	99.0	0.0	.	102	.	.	Atlas-SNP
EVPL	2125	hgsc.bcm.edu	37	17	74004527	74004527	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	EVPL	NM_001988	exon22	c.C4759G	p.Q1587E	CGGCCTGGTCCCG	.	183.0	82.0	65.0	0.0	.	155	.	.	Atlas-SNP
EPG5	57724	hgsc.bcm.edu	37	18	43505857	43505857	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	EPG5	NM_020964	exon14	c.C2565G	p.Y855X	AAACAAGTATAGA	.	229.0	155.0	187.0	0.0	.	199	.	.	Atlas-SNP
ABCA7	10347	hgsc.bcm.edu	37	19	1062215	1062215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	ABCA7	NM_019112	exon42	c.G5615T	p.C1872F	GATACTGCCCTCA	.	67.0	30.0	106.0	0.0	.	174	.	.	Atlas-SNP
GNA15	2769	hgsc.bcm.edu	37	19	3155884	3155884	+	Silent	SNP	G	G	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	GNA15	NM_002068	exon5	c.G678T	p.V226V	GAACGTGATCGCC	.	79.0	46.0	109.0	0.0	.	40	.	.	Atlas-SNP
SLC27A1	376497	hgsc.bcm.edu	37	19	17597668	17597668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	SLC27A1	NM_198580	exon2	c.C464A	p.A155D	TGGAGGCCGCGCT	.	40.0	20.0	75.0	0.0	.	97	.	.	Atlas-SNP
MEGF8	1954	hgsc.bcm.edu	37	19	42830443	42830443	+	Silent	SNP	C	C	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	MEGF8	NM_001271938	exon1	c.C48T	p.A16A	CTTGGCCGTGCTG	.	267.0	127.0	337.0	0.0	.	358	.	.	Atlas-SNP
CACNG8	59283	hgsc.bcm.edu	37	19	54485510	54485510	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	CACNG8	NM_031895	exon4	c.G685T	p.E229X	TACATCGAGCGCA	.	34.0	29.0	75.0	0.0	.	29	.	.	Atlas-SNP
ZIM2	23619	hgsc.bcm.edu	37	19	57286539	57286539	+	Silent	SNP	G	G	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	ZIM2,bladder,carcinoma,0,2	ZIM2	NM_015363	exon11	c.C1101A	p.L367L	TGGCATGAGATAG	.	70.0	59.0	90.0	0.0	.	511	2	.	Atlas-SNP
ASXL1	171023	hgsc.bcm.edu	37	20	31024023	31024023	+	Silent	SNP	T	T	C	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	ASXL1	NM_015338	exon12	c.T3508C	p.L1170L	AGTTCTTTAAGGG	.	79.0	37.0	118.0	0.0	.	1114	.	.	Atlas-SNP
BPIFB6	128859	hgsc.bcm.edu	37	20	31622067	31622067	+	Silent	SNP	G	G	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	.	NM_174897	exon3	c.G273A	p.V91V	ATGTGTGTCCACA	.	46.0	20.0	81.0	0.0	.	.	.	.	Atlas-SNP
CNBD2	140894	hgsc.bcm.edu	37	20	34568456	34568456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	C20orf152,NS,carcinoma,-1,1	.	NM_080834	exon4	c.G319A	p.V107I	CAGGCCGTCTGTA	.	109.0	40.0	147.0	0.0	.	.	1	.	Atlas-SNP
NFATC2	4773	hgsc.bcm.edu	37	20	50139710	50139710	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	NFATC2	NM_012340	exon2	c.A1070C	p.Q357P	TCGCCCTGCTCGC	.	95.0	51.0	133.0	0.0	.	112	.	.	Atlas-SNP
NCAM2	4685	hgsc.bcm.edu	37	21	22782603	22782603	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	NCAM2	NM_004540	exon10	c.A1205T	p.K402M	CCCCCAAGTTTAT	.	328.0	127.0	247.0	0.0	.	220	.	.	Atlas-SNP
SYNJ1	8867	hgsc.bcm.edu	37	21	34018849	34018849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	SYNJ1	NM_203446	exon24	c.C3218T	p.S1073L	GAACTTGAAGATG	.	145.0	60.0	169.0	0.0	.	253	.	.	Atlas-SNP
KRTAP10-9	386676	hgsc.bcm.edu	37	21	46047778	46047778	+	Silent	SNP	T	T	G	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	KRTAP10-9	NM_198690	exon1	c.T690G	p.S230S	CTCCTCTGTGTCC	.	64.0	29.0	63.0	0.0	.	24	.	.	Atlas-SNP
PRAME	23532	hgsc.bcm.edu	37	22	22890574	22890574	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	PRAME	NM_206954	exon6	c.T1445G	p.L482R	GCACTAAGCCAGA	.	86.0	37.0	128.0	0.0	.	78	.	.	Atlas-SNP
MAGEB1	4112	hgsc.bcm.edu	37	X	30269467	30269467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	MAGEB1	NM_177415	exon3	c.T857C	p.L286P	AAGTCCTCGAGTT	.	93.0	6.0	94.0	0.0	.	76	.	.	Atlas-SNP
FAM47B	170062	hgsc.bcm.edu	37	X	34962125	34962125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	FAM47B	NM_152631	exon1	c.C1177T	p.R393W	GAGAGTCGGATGC	.	89.0	85.0	77.0	0.0	.	209	.	.	Atlas-SNP
DRP2	1821	hgsc.bcm.edu	37	X	100496749	100496749	+	Missense_Mutation	SNP	C	C	T	rs369730985		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	DRP2	NM_001939	exon7	c.C652T	p.R218C	ACAGCCCGCTGTG	.	51.0	48.0	66.0	0.0	.	98	.	.	Atlas-SNP
DRP2	1821	hgsc.bcm.edu	37	X	100496750	100496750	+	Missense_Mutation	SNP	G	G	T	rs368516281	alternate_allele	TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	DRP2	NM_001939	exon7	c.G653T	p.R218L	CAGCCCGCTGTGT	.	51.0	48.0	66.0	0.0	.	98	.	.	Atlas-SNP
SERPINA7	6906	hgsc.bcm.edu	37	X	105279299	105279299	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	SERPINA7	NM_000354	exon3	c.C700T	p.Q234X	GCACTTGAACAGT	.	86.0	75.0	81.0	0.0	.	72	.	.	Atlas-SNP
ZDHHC9	51114	hgsc.bcm.edu	37	X	128957708	128957708	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	ZDHHC9	NM_001008222	exon4	c.A434T	p.K145M	AAGATCTTGCATG	.	50.0	45.0	54.0	0.0	.	41	.	.	Atlas-SNP
SLC6A8	6535	hgsc.bcm.edu	37	X	152959837	152959837	+	Silent	SNP	G	G	C	rs1060453	alternate_allele	TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	SLC6A8	NM_005629	exon10	c.G1431C	p.S477S	CTACTCGGCCAGC	.	81.0	78.0	81.0	0.0	.	34	.	.	Atlas-SNP
IGJ	3512	hgsc.bcm.edu	37	4	71522068	71522068	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	IGJ	NM_144646	exon4	c.459delA	p.P153fs	.	.	211.0	97.0	196.0	0.0	.	13	.	.	Atlas-Indel
ALB	213	hgsc.bcm.edu	37	4	74274521	74274524	+	In_Frame_Del	DEL	AAGT	AAGT	-	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	AAGT	AAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	ALB	NM_000477	exon4	c.480_482del	p.160_161del	.	.	77.0	28.0	87.0	0.0	.	132	.	.	Atlas-Indel
GUCY1A3	2982	hgsc.bcm.edu	37	4	156618268	156618268	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	GUCY1A3	NM_001130682	exon3	c.248delT	p.F83fs	.	.	112.0	49.0	96.0	0.0	.	133	.	.	Atlas-Indel
CASP3	836	hgsc.bcm.edu	37	4	185550584	185550584	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	CASP3	NM_032991	exon7	c.677delA	p.Y226fs	.	.	186.0	110.0	125.0	0.0	.	27	.	.	Atlas-Indel
GLDC	2731	hgsc.bcm.edu	37	9	6610207	6610208	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	GLDC	NM_000170	exon4	c.620_621insAC	p.L207fs	.	.	87.0	32.0	110.0	0.0	.	118	.	.	Atlas-Indel
C10orf12	26148	hgsc.bcm.edu	37	10	98743503	98743504	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	.	C10orf12	NM_015652	exon1	c.2356_2357insG	p.P786fs	.	.	193.0	16.0	199.0	0.0	.	94	.	.	Atlas-Indel
SPRY2	10253	hgsc.bcm.edu	37	13	80911241	80911241	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-ZS-A9CF-01A-11D-A382-10	TCGA-ZS-A9CF-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2b7e988c-761a-40aa-bbf0-23064aa3a82c	5feaeaff-2fb4-4cfd-a652-27e3146e3877	SPRY2,NS,carcinoma,+2,1	SPRY2	NM_005842	exon2	c.601delT	p.C201fs	.	.	123.0	51.0	152.0	0.0	.	28	1	.	Atlas-Indel