Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq dbSNP_AF Algorithm HSPG2 3339 hgsc.bcm.edu hg19 1 22178363 22178363 + Silent SNP G G A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . HSPG2 NM_005529 exon54 c.C6927T p.Y2309Y GCAGACGTACTGT . 82.0 4.0 102.0 0.0 . 311 . . Atlas-SNP HSPG2 3339 hgsc.bcm.edu hg19 1 22216583 22216583 + Missense_Mutation SNP A A T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . HSPG2 NM_005529 exon6 c.T465A p.N155K ATCCGCATTCCCT . 125.0 15.0 160.0 0.0 . 311 . . Atlas-SNP NES 10763 hgsc.bcm.edu hg19 1 156639240 156639240 + Silent SNP C C T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . NES NM_006617 exon4 c.G4740A p.Q1580Q CTCCTCCTGAAAG . 121.0 6.0 113.0 0.0 . 196 . . Atlas-SNP SPTA1 6708 hgsc.bcm.edu hg19 1 158648295 158648295 + Missense_Mutation SNP C C A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . SPTA1 NM_003126 exon6 c.G708T p.Q236H CTTAGACTGAATT . 83.0 28.0 73.0 0.0 . 720 . . Atlas-SNP SLAMF8 56833 hgsc.bcm.edu hg19 1 159802783 159802783 + Missense_Mutation SNP A A G novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . SLAMF8 NM_020125 exon3 c.A485G p.Y162C TAACCTATAGCTG . 194.0 94.0 163.0 0.0 . 30 . . Atlas-SNP FAM5C 339479 hgsc.bcm.edu hg19 1 190067645 190067645 + Missense_Mutation SNP C C A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 FAM5C,NS,carcinoma,0,1 FAM5C NM_199051 exon8 c.G1804T p.D602Y GTAGGTCCAACTT . 162.0 45.0 104.0 0.0 . 343 . . Atlas-SNP GPR25 2848 hgsc.bcm.edu hg19 1 200842406 200842406 + Silent SNP C C T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . GPR25 NM_005298 exon1 c.C241T p.L81L CTGCACCTGGCGG . 101.0 50.0 92.0 0.0 . 23 . . Atlas-SNP IKBKE 9641 hgsc.bcm.edu hg19 1 206658535 206658535 + Missense_Mutation SNP C C T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . IKBKE NM_001193322 exon15 c.C1508T p.A503V AGCTAGCGGAGGT . 194.0 45.0 180.0 0.0 . 77 . . Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73613037 73613037 + Missense_Mutation SNP A A T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . ALMS1 NM_015120 exon1 c.A41T p.E14V TGGAGGAGGAGGA . 197.0 29.0 145.0 0.0 . 384 . . Atlas-SNP ALMS1 7840 hgsc.bcm.edu hg19 2 73613065 73613065 + Silent SNP G G A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . ALMS1 NM_015120 exon1 c.G69A p.E23E GGAGGAGGAGGAA . 460.0 26.0 543.0 0.0 . 384 . . Atlas-SNP SESTD1 91404 hgsc.bcm.edu hg19 2 180008343 180008343 + Missense_Mutation SNP T T A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . SESTD1 NM_178123 exon9 c.A825T p.E275D AATCTCTTCTAAC . 78.0 28.0 77.0 0.0 . 66 . . Atlas-SNP NDUFS1 4719 hgsc.bcm.edu hg19 2 206994823 206994823 + Missense_Mutation SNP A A C novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . NDUFS1 NM_001199984 exon15 c.T1739G p.I580S TAAATAATGAAAC . 109.0 47.0 108.0 0.0 . 82 . . Atlas-SNP CTNNB1 1499 hgsc.bcm.edu hg19 3 41266103 41266103 + Missense_Mutation SNP G G A rs121913399 TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 CTNNB1,gallbladder,other,-1,1 CTNNB1 NM_001098209 exon3 c.G100A p.G34R GACTCTGGAATCC . 159.0 113.0 193.0 0.0 . 4904 . . Atlas-SNP BAP1 8314 hgsc.bcm.edu hg19 3 52437545 52437545 + Missense_Mutation SNP A A T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . BAP1 NM_004656 exon13 c.T1616A p.L539Q ACACGCAGCAGGC . 110.0 17.0 119.0 0.0 . 371 . . Atlas-SNP SHROOM3 57619 hgsc.bcm.edu hg19 4 77680796 77680796 + Missense_Mutation SNP T T C novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . SHROOM3 NM_020859 exon9 c.T5297C p.M1766T AAGAGATGCCAGC . 215.0 81.0 238.0 0.0 . 134 . . Atlas-SNP DSPP 1834 hgsc.bcm.edu hg19 4 88537513 88537513 + Missense_Mutation SNP A A C rs112275895 TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . DSPP NM_014208 exon5 c.A3699C p.E1233D CAATGAAAGCAGC . 386.0 73.0 274.0 0.0 . 174 . A|0.500;C|0.500 Atlas-SNP NFKB1 4790 hgsc.bcm.edu hg19 4 103528819 103528819 + Missense_Mutation SNP T T G novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . NFKB1 NM_003998 exon19 c.T2138G p.V713G CCCATGTGGACAG . 68.0 23.0 77.0 0.0 . 78 . . Atlas-SNP CASP3 836 hgsc.bcm.edu hg19 4 185552301 185552301 + Missense_Mutation SNP C C T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . CASP3 NM_004346 exon7 c.G494A p.G165D TCTGTACCACGGC . 104.0 42.0 124.0 0.0 . 27 . . Atlas-SNP MROH2B 133558 hgsc.bcm.edu hg19 5 41057463 41057463 + Splice_Site SNP C C T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 HEATR7B2,bladder,carcinoma,0,1 . NM_173489 exon9 c.757-1G>A . TAGGCTCTAAAGT . 88.0 31.0 102.0 0.0 . . . . Atlas-SNP KIAA0825 285600 hgsc.bcm.edu hg19 5 93775757 93775757 + Missense_Mutation SNP G G T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . KIAA0825 NM_001145678 exon14 c.C2427A p.N809K GTTCCAGTTACAA . 343.0 115.0 357.0 1.0 . 172 . . Atlas-SNP WDR36 134430 hgsc.bcm.edu hg19 5 110443041 110443041 + Missense_Mutation SNP G G C rs140155952 bycluster;alternate_allele TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . WDR36 NM_139281 exon12 c.G1397C p.G466A ATCAAGGTAAGCT . 176.0 58.0 182.0 0.0 . 111 . G|1.000;A|0.000 Atlas-SNP TRPC7 57113 hgsc.bcm.edu hg19 5 135692611 135692611 + Silent SNP G G A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . TRPC7 NM_001167576 exon2 c.C465T p.D155D GTCCTCGTCGTAG . 76.0 29.0 70.0 0.0 . 126 . . Atlas-SNP POU4F3 5459 hgsc.bcm.edu hg19 5 145719608 145719608 + Silent SNP G G A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . POU4F3 NM_002700 exon2 c.G618A p.A206A CCAGGCGGACGTG . 105.0 38.0 98.0 0.0 . 47 . . Atlas-SNP DCDC2 51473 hgsc.bcm.edu hg19 6 24291202 24291202 + Missense_Mutation SNP C C A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . DCDC2 NM_001195610 exon6 c.G662T p.S221I AACTCACTGTAAG . 136.0 21.0 118.0 0.0 . 53 . . Atlas-SNP ABCF1 23 hgsc.bcm.edu hg19 6 30558377 30558377 + Missense_Mutation SNP G G A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . ABCF1 NM_001025091 exon25 c.G2437A p.E813K GTGGTGGAGGAGC . 225.0 85.0 215.0 0.0 . 61 . . Atlas-SNP MUT 4594 hgsc.bcm.edu hg19 6 49407923 49407923 + Missense_Mutation SNP A A T rs1136145 alternate_allele TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . MUT NM_000255 exon11 c.T1952A p.F651Y ACCTGGAAAAGAG . 72.0 25.0 56.0 0.0 . 70 . . Atlas-SNP DDX43 55510 hgsc.bcm.edu hg19 6 74121953 74121953 + Missense_Mutation SNP C C A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 DDX43,middle_lobe,carcinoma,0,1 DDX43 NM_018665 exon11 c.C1306A p.R436S GTTCATCGCCTCG . 119.0 65.0 126.0 0.0 . 69 . . Atlas-SNP FILIP1 27145 hgsc.bcm.edu hg19 6 76022223 76022223 + Missense_Mutation SNP G G A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . FILIP1 NM_015687 exon5 c.C3325T p.L1109F AGCGAAGGACAGT . 228.0 85.0 231.0 0.0 . 173 . . Atlas-SNP PRDM1 639 hgsc.bcm.edu hg19 6 106552764 106552764 + Silent SNP C C T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . PRDM1 NM_001198 exon5 c.C729T p.V243V GAATGTCCCAAAG . 112.0 41.0 167.0 0.0 . 195 . . Atlas-SNP ADCY1 107 hgsc.bcm.edu hg19 7 45750131 45750131 + Silent SNP C C T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . ADCY1 NM_021116 exon19 c.C2937T p.I979I AGGCATCAATGTT . 95.0 38.0 109.0 0.0 . 187 . . Atlas-SNP SEMA3D 223117 hgsc.bcm.edu hg19 7 84651739 84651739 + Missense_Mutation SNP T T A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . SEMA3D NM_152754 exon11 c.A1382T p.D461V TGGCCATCTTCTG . 139.0 56.0 117.0 0.0 . 177 . . Atlas-SNP ABCB1 5243 hgsc.bcm.edu hg19 7 87195498 87195498 + Missense_Mutation SNP A A T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . ABCB1 NM_000927 exon8 c.T590A p.M197K GTTGCCATTGACT . 164.0 57.0 207.0 0.0 . 263 . . Atlas-SNP PSMC2 5701 hgsc.bcm.edu hg19 7 103008217 103008217 + Nonsense_Mutation SNP A A T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . PSMC2 NM_002803 exon11 c.A1105T p.R369X GATATCAGATTTG . 101.0 25.0 107.0 0.0 . 38 . . Atlas-SNP SMO 6608 hgsc.bcm.edu hg19 7 128852200 128852200 + Missense_Mutation SNP T T A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . SMO NM_005631 exon12 c.T2272A p.W758R GTGGCATGGGCTC . 120.0 44.0 147.0 0.0 . 145 . . Atlas-SNP DGKI 9162 hgsc.bcm.edu hg19 7 137154301 137154301 + Missense_Mutation SNP A A G novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . DGKI NM_004717 exon25 c.T2492C p.L831P CCATCTAGGAAGC . 109.0 44.0 131.0 0.0 . 335 . . Atlas-SNP WDR60 55112 hgsc.bcm.edu hg19 7 158715203 158715203 + Missense_Mutation SNP C C A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . WDR60 NM_018051 exon16 c.C2057A p.P686H GGCAGCCTTCAGG . 115.0 47.0 140.0 0.0 . 94 . . Atlas-SNP RHOBTB2 23221 hgsc.bcm.edu hg19 8 22865129 22865129 + Silent SNP C C G novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . RHOBTB2 NM_001160036 exon7 c.C1437G p.V479V CGAGGTCTTTGAT . 55.0 32.0 94.0 0.0 . 67 . . Atlas-SNP NUGGC 389643 hgsc.bcm.edu hg19 8 27888861 27888861 + Missense_Mutation SNP T T C novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . . NM_001010906 exon15 c.A1807G p.I603V CATCTATGTGAGG . 57.0 10.0 131.0 0.0 . . . . Atlas-SNP MCM4 4173 hgsc.bcm.edu hg19 8 48883070 48883070 + Splice_Site SNP G G A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . MCM4 NM_182746 exon12 c.1435-1G>A . TATTTAGGGAATT . 246.0 12.0 114.0 0.0 . 97 . . Atlas-SNP ATAD2 29028 hgsc.bcm.edu hg19 8 124369923 124369923 + Missense_Mutation SNP G G A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . ATAD2 NM_014109 exon12 c.C1436T p.A479V GCAAGTGCTCTGG . 237.0 42.0 137.0 0.0 . 160 . . Atlas-SNP BAI1 575 hgsc.bcm.edu hg19 8 143624960 143624960 + Splice_Site SNP A A G novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . BAI1 NM_001702 exon29 c.4450-2A>G . GCCTGCAGAAGAT . 784.0 258.0 429.0 0.0 . 146 . . Atlas-SNP WNK2 65268 hgsc.bcm.edu hg19 9 96070795 96070795 + Silent SNP C C T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . WNK2 NM_006648 exon27 c.C6445T p.L2149L AACCAGCTGAAGC . 263.0 37.0 267.0 0.0 . 277 . . Atlas-SNP CELF2 10659 hgsc.bcm.edu hg19 10 11330509 11330509 + Missense_Mutation SNP A A G novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . CELF2 NM_006561 exon9 c.A970G p.S324G CTCACGAGTCCCG . 36.0 15.0 43.0 0.0 . 78 . . Atlas-SNP PARG 8505 hgsc.bcm.edu hg19 10 51028218 51028218 + Silent SNP G G T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . PARG NM_003631 exon17 c.C2769A p.L923L AACAGTGAGTTTC . 134.0 10.0 142.0 0.0 . 46 . . Atlas-SNP TACC2 10579 hgsc.bcm.edu hg19 10 123903126 123903126 + Silent SNP G G C rs145822203 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . TACC2 NM_206862 exon7 c.G5739C p.S1913S TCCCTCGGCTGCA . 67.0 18.0 89.0 0.0 . 271 . G|0.999;A|0.001 Atlas-SNP TACC2 10579 hgsc.bcm.edu hg19 10 123969922 123969922 + Silent SNP T T C novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . TACC2 NM_206862 exon9 c.T5982C p.S1994S TGGTTCTGAGACA . 159.0 60.0 175.0 0.0 . 271 . . Atlas-SNP LDHAL6A 160287 hgsc.bcm.edu hg19 11 18500385 18500385 + Missense_Mutation SNP C C T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . LDHAL6A NM_144972 exon7 c.C967T p.L323F GAAACACTTTGGG . 68.0 23.0 66.0 0.0 . 35 . . Atlas-SNP UBASH3B 84959 hgsc.bcm.edu hg19 11 122671897 122671897 + Silent SNP T T G novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . UBASH3B NM_032873 exon11 c.T1452G p.G484G CTAAGGTTTACAA . 121.0 49.0 113.0 0.0 . 73 . . Atlas-SNP NECAP1 25977 hgsc.bcm.edu hg19 12 8248299 8248299 + Missense_Mutation SNP G G A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . NECAP1 NM_015509 exon7 c.G779A p.S260N CCTCCAGGTAATG . 44.0 16.0 48.0 0.0 . 21 . . Atlas-SNP PTPRQ 374462 hgsc.bcm.edu hg19 12 80889873 80889873 + Missense_Mutation SNP A A G novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . PTPRQ NM_001145026 exon10 c.A1462G p.T488A GTGAGAACTTCAG . 256.0 31.0 288.0 0.0 . 119 . . Atlas-SNP CCDC60 160777 hgsc.bcm.edu hg19 12 119909936 119909936 + Missense_Mutation SNP T T A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . CCDC60 NM_178499 exon3 c.T308A p.I103N AAAAGATCTCAGA . 139.0 43.0 161.0 0.0 . 84 . . Atlas-SNP ACIN1 22985 hgsc.bcm.edu hg19 14 23549129 23549129 + Missense_Mutation SNP G G A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . ACIN1 NM_001164814 exon6 c.C1589T p.P530L TTTAGAGGGAGGG . 66.0 27.0 92.0 0.0 . 147 . . Atlas-SNP HECTD1 25831 hgsc.bcm.edu hg19 14 31613412 31613412 + Missense_Mutation SNP T T A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . HECTD1 NM_015382 exon17 c.A2683T p.N895Y TTAGGTTTTCTAA . 235.0 35.0 247.0 0.0 . 159 . . Atlas-SNP NID2 22795 hgsc.bcm.edu hg19 14 52535631 52535631 + Missense_Mutation SNP C C G novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . NID2 NM_007361 exon1 c.G82C p.A28P CCGCGGCCCGCAA . 225.0 83.0 276.0 0.0 . 201 . . Atlas-SNP YLPM1 56252 hgsc.bcm.edu hg19 14 75265439 75265439 + Missense_Mutation SNP C C T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . YLPM1 NM_019589 exon5 c.C3439T p.P1147S GGACCACCTCGAG . 163.0 61.0 152.0 0.0 . 298 . . Atlas-SNP BCL11B 64919 hgsc.bcm.edu hg19 14 99640842 99640842 + Silent SNP C C T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 BCL11B,brain,glioma,0,1 BCL11B NM_138576 exon4 c.G2331A p.P777P CAGGTGCGGGGTG . 25.0 8.0 21.0 1.0 . 108 . . Atlas-SNP BMF 90427 hgsc.bcm.edu hg19 15 40398071 40398071 + Missense_Mutation SNP G G T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . BMF NM_001003943 exon3 c.C217A p.L73I GGCTGAGAGTCTG . 89.0 36.0 104.0 0.0 . 18 . . Atlas-SNP UNC13C 440279 hgsc.bcm.edu hg19 15 54305886 54305886 + Silent SNP A A G novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . UNC13C NM_001080534 exon1 c.A786G p.E262E TTCTGAACTACGA . 75.0 25.0 91.0 0.0 . 674 . . Atlas-SNP LRRK1 79705 hgsc.bcm.edu hg19 15 101593240 101593240 + Missense_Mutation SNP C C T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . LRRK1 NM_024652 exon25 c.C3803T p.A1268V CTGTGGCCGTCAA . 129.0 42.0 160.0 0.0 . 310 . . Atlas-SNP RHOT2 89941 hgsc.bcm.edu hg19 16 723032 723032 + Silent SNP C C T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . RHOT2 NM_138769 exon18 c.C1632T p.R544R TTGCCGCAAGCAC . 111.0 37.0 121.0 0.0 . 35 . . Atlas-SNP NAA60 79903 hgsc.bcm.edu hg19 16 3534783 3534783 + Missense_Mutation SNP C C A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . NAA60 NM_001083600 exon6 c.C657A p.S219R CCACAGCCTGCTC . 100.0 40.0 123.0 0.0 . 21 . . Atlas-SNP RPH3AL 9501 hgsc.bcm.edu hg19 17 63676 63676 + Silent SNP T T A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . RPH3AL NM_006987 exon10 c.A915T p.A305A TGGAGCTGCGTCA . 54.0 12.0 83.0 0.0 . 18 . . Atlas-SNP POLR2A 5430 hgsc.bcm.edu hg19 17 7406937 7406937 + Missense_Mutation SNP G G T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . POLR2A NM_000937 exon19 c.G3067T p.V1023L GTGATTGTGAATG . 93.0 4.0 155.0 0.0 . 157 . . Atlas-SNP ZNF18 7566 hgsc.bcm.edu hg19 17 11882000 11882000 + Silent SNP G G T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . ZNF18 NM_144680 exon9 c.C924A p.L308L ATGCAGGAGCTCC . 54.0 16.0 43.0 0.0 . 42 . . Atlas-SNP SYNRG 11276 hgsc.bcm.edu hg19 17 35937549 35937549 + Missense_Mutation SNP C C T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . SYNRG NM_007247 exon7 c.G752A p.G251E ACACATCCATCTA . 166.0 61.0 183.0 0.0 . 101 . . Atlas-SNP ACSF2 80221 hgsc.bcm.edu hg19 17 48539553 48539553 + Silent SNP C C T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . ACSF2 NM_025149 exon5 c.C516T p.C172C GGGCTGCAAGGCC . 51.0 26.0 63.0 0.0 . 46 . . Atlas-SNP LAMA1 284217 hgsc.bcm.edu hg19 18 6993751 6993751 + Missense_Mutation SNP G G A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . LAMA1 NM_005559 exon35 c.C4897T p.L1633F TAGTGAGCTGGTG . 52.0 23.0 72.0 0.0 . 458 . . Atlas-SNP LAMA3 3909 hgsc.bcm.edu hg19 18 21437935 21437935 + Missense_Mutation SNP G G C novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 LAMA3,NS,carcinoma,0,3 LAMA3 NM_001127717 exon33 c.G4264C p.G1422R GGGACCGGGGCTT . 82.0 41.0 82.0 0.0 . 397 . . Atlas-SNP MEX3D 399664 hgsc.bcm.edu hg19 19 1556821 1556821 + Missense_Mutation SNP C C T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 MEX3D,NS,carcinoma,0,1 MEX3D NM_203304 exon2 c.G697A p.V233M TCTCCACGTCCTC . 131.0 45.0 197.0 0.0 . 11 . . Atlas-SNP THOP1 7064 hgsc.bcm.edu hg19 19 2811648 2811648 + Missense_Mutation SNP G G C novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . THOP1 NM_003249 exon12 c.G1824C p.Q608H CGCCCAGTACTAC . 89.0 28.0 134.0 0.0 . 49 . . Atlas-SNP ANKRD24 170961 hgsc.bcm.edu hg19 19 4216727 4216727 + Missense_Mutation SNP G G T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . ANKRD24 NM_133475 exon18 c.G1570T p.A524S GAGGGGGCAGCCT . 84.0 30.0 131.0 0.0 . 180 . . Atlas-SNP COL5A3 50509 hgsc.bcm.edu hg19 19 10089907 10089907 + Silent SNP T T A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . COL5A3 NM_015719 exon39 c.A2775T p.T925T TTCTCCTGTCTTT . 179.0 23.0 205.0 0.0 . 243 . . Atlas-SNP RASGRP4 115727 hgsc.bcm.edu hg19 19 38912788 38912788 + Missense_Mutation SNP G G A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . RASGRP4 NM_001146206 exon2 c.C29T p.S10F TGGTGGGACTTCC . 43.0 13.0 41.0 0.0 . 54 . . Atlas-SNP PNKP 11284 hgsc.bcm.edu hg19 19 50368637 50368637 + Missense_Mutation SNP C C T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . PNKP NM_007254 exon4 c.G245A p.G82E TCCAACCCCGGCT . 120.0 13.0 177.0 0.0 . 71 . . Atlas-SNP BRSK1 84446 hgsc.bcm.edu hg19 19 55815053 55815053 + Missense_Mutation SNP T T C novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . BRSK1 NM_032430 exon12 c.T1145C p.V382A AGCGTGTGGATTC . 285.0 98.0 307.0 1.0 . 192 . . Atlas-SNP PTGIS 5740 hgsc.bcm.edu hg19 20 48130860 48130860 + Missense_Mutation SNP G G A novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . PTGIS NM_000961 exon7 c.C928T p.R310C CTCCGCGGACAGC . 70.0 23.0 73.0 0.0 . 60 . . Atlas-SNP PRPF6 24148 hgsc.bcm.edu hg19 20 62612631 62612631 + Missense_Mutation SNP G G T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . PRPF6 NM_012469 exon1 c.G33T p.M11I AGGGATGCCCGCG . 145.0 48.0 195.0 0.0 . 88 . . Atlas-SNP APOBEC3G 60489 hgsc.bcm.edu hg19 22 39476966 39476966 + Missense_Mutation SNP A A T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . APOBEC3G NM_021822 exon3 c.A200T p.E67V ACCCAGAGATGAG . 78.0 29.0 97.0 0.0 . 69 . . Atlas-SNP CYP2D6 1565 hgsc.bcm.edu hg19 22 42525162 42525162 + Silent SNP G G C rs369043970 alternate_allele TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . CYP2D6 NM_000106 exon3 c.C378G p.P126P CCACGCGGGCCCA . 73.0 21.0 58.0 0.0 . 104 . . Atlas-SNP PPP2R3B 28227 hgsc.bcm.edu hg19 X 306923 306923 + Missense_Mutation SNP T T C novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . PPP2R3B NM_013239 exon6 c.A865G p.S289G AGGAGCTCCTCCG . 46.0 10.0 59.0 0.0 . 43 . . Atlas-SNP AR 367 hgsc.bcm.edu hg19 X 66766365 66766365 + Silent SNP C C T novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . AR NM_000044 exon1 c.C1377T p.G459G CGGCGGCGGCGGC . 472.0 86.0 193.0 0.0 . 249 . . Atlas-SNP CBL 867 hgsc.bcm.edu hg19 11 119168164 119168165 + Frame_Shift_Ins INS - - CATCTAT novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . CBL NM_005188 exon14 c.2224_2225insCATCTAT p.P742fs . . 93.0 14.0 122.0 0.0 . 408 . . Atlas-INDEL CHUK 1147 hgsc.bcm.edu hg19 10 101980381 101980381 + Frame_Shift_Del DEL T T - novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . CHUK NM_001278 exon5 c.439delC p.P147fs . . 101.0 45.0 99.0 0.0 . 71 . . Atlas-INDEL ALB 213 hgsc.bcm.edu hg19 4 74274521 74274524 + In_Frame_Del DEL AAGT AAGT - novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 AAGT AAGT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . ALB NM_000477 exon4 c.480_482del p.160_161del . . 102.0 30.0 115.0 0.0 . 132 . . Atlas-INDEL ACCSL 390110 hgsc.bcm.edu hg19 11 44074236 44074242 + Frame_Shift_Del DEL TCTATGG TCTATGG - novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 TCTATGG TCTATGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . ACCSL NM_001031854 exon6 c.796_802del p.266_268del . . 67.0 14.0 81.0 0.0 . 57 . . Atlas-INDEL TCERG1 10915 hgsc.bcm.edu hg19 5 145838662 145838663 + In_Frame_Ins INS - - GCCCAG novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . TCERG1 NM_006706 exon4 c.654_655insGCCCAG p.Q218delinsQAQ . . 147.0 18.0 156.0 0.0 . 148 . . Atlas-INDEL PCDHB3 56132 hgsc.bcm.edu hg19 5 140480417 140480418 + Frame_Shift_Ins INS - - G novel TCGA-ZS-A9CG-01A-11D-A36X-10 TCGA-ZS-A9CG-10A-01D-A370-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq d44d787d-1a49-474d-9dca-07f1930ff316 823b073f-c65b-4652-8dfc-2957727cbb77 . PCDHB3 NM_018937 exon1 c.184_185insG p.R62fs . . 257.0 55.0 250.0 0.0 . 208 . . Atlas-INDEL