Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
GRB7	2886	broad.mit.edu	37	17	37903087	37903087	+	Silent	SNP	C	C	T	rs112084267	byFrequency	TCGA-55-8513-01A-11D-2393-08	TCGA-55-8513-10A-01D-2393-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84e1f714-997a-48ce-b614-97d586d957d9	e0e827ff-774c-4620-aa0a-7fbcfb54d4e4	g.chr17:37903087C>T	ENST00000309156.4	+	15	1793	c.1536C>T	c.(1534-1536)caC>caT	p.H512H	GRB7_ENST00000394211.3_Silent_p.H512H|GRB7_ENST00000445327.2_Silent_p.H535H|GRB7_ENST00000309185.3_3'UTR|GRB7_ENST00000394204.1_3'UTR|GRB7_ENST00000394209.2_Silent_p.H512H	NM_005310.3	NP_005301.2	Q14451	GRB7_HUMAN	growth factor receptor-bound protein 7	512	SH2.				blood coagulation|epidermal growth factor receptor signaling pathway|leukocyte migration|negative regulation of translation|positive regulation of cell migration|stress granule assembly	cytosol|focal adhesion|stress granule	phosphatidylinositol binding|protein kinase binding|SH3/SH2 adaptor activity			breast(1)|endometrium(1)|kidney(1)|large_intestine(2)|lung(6)|ovary(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	18	all_cancers(6;1.06e-93)|all_epithelial(6;2.33e-113)|Breast(7;9.37e-100)|Lung NSC(9;9.76e-10)|all_lung(9;5.34e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Epithelial(3;6.86e-60)|all cancers(3;1.65e-53)|BRCA - Breast invasive adenocarcinoma(8;2.03e-43)|STAD - Stomach adenocarcinoma(3;1.43e-12)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			TGGAGTTCCACCAGCTGAACC	0.647000													5	91					0	0	1	0	0
CBWD2	150472	broad.mit.edu	37	2	114195384	114195384	+	Translation_Start_Site	SNP	G	G	A			TCGA-55-8513-01A-11D-2393-08	TCGA-55-8513-10A-01D-2393-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84e1f714-997a-48ce-b614-97d586d957d9	e0e827ff-774c-4620-aa0a-7fbcfb54d4e4	g.chr2:114195384G>A	ENST00000259199.4	+	0	117				CBWD2_ENST00000433343.2_De_novo_Start_InFrame|CBWD2_ENST00000416503.2_De_novo_Start_OutOfFrame	NM_172003.3	NP_742000.1	Q8IUF1	CBWD2_HUMAN	COBW domain containing 2								ATP binding|protein binding			endometrium(1)|lung(1)	2						GGCGTGCGCGGCTGCGGTACG	0.667000													4	59					0	0	1	0	0
FNDC7	163479	broad.mit.edu	37	1	109271371	109271371	+	Missense_Mutation	SNP	G	G	A			TCGA-55-8513-01A-11D-2393-08	TCGA-55-8513-10A-01D-2393-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84e1f714-997a-48ce-b614-97d586d957d9	e0e827ff-774c-4620-aa0a-7fbcfb54d4e4	g.chr1:109271371G>A	ENST00000370017.3	+	8	1764	c.1487G>A	c.(1486-1488)gGa>gAa	p.G496E	FNDC7_ENST00000271311.2_Missense_Mutation_p.G497E	NM_001144937.1	NP_001138409.1	Q5VTL7	FNDC7_HUMAN	fibronectin type III domain containing 7	497	Fibronectin type-III 6.					extracellular region				breast(1)|endometrium(1)|kidney(3)|large_intestine(2)|lung(6)|ovary(1)|skin(4)|stomach(1)|urinary_tract(1)	20		all_lung(203;0.00439)|Lung NSC(277;0.00683)|all_epithelial(167;0.00728)		Colorectal(144;0.0314)|Lung(183;0.0924)|COAD - Colon adenocarcinoma(174;0.119)|Epithelial(280;0.173)|all cancers(265;0.244)		GGGGAGAAAGGACTGTATCAG	0.512000													6	108					0	0	1	0	0
CROCC	9696	broad.mit.edu	37	1	17272075	17272075	+	Missense_Mutation	SNP	G	G	A	rs2781608	by1000genomes	TCGA-55-8513-01A-11D-2393-08	TCGA-55-8513-10A-01D-2393-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84e1f714-997a-48ce-b614-97d586d957d9	e0e827ff-774c-4620-aa0a-7fbcfb54d4e4	g.chr1:17272075G>A	ENST00000375541.5	+	15	2179	c.2110G>A	c.(2110-2112)Gcc>Acc	p.A704T	CROCC_ENST00000467938.1_3'UTR	NM_014675.3	NP_055490.3	Q5TZA2	CROCC_HUMAN	ciliary rootlet coiled-coil, rootletin	704					cell cycle|cell projection organization|centrosome organization|protein localization	actin cytoskeleton|centriole|ciliary rootlet|plasma membrane	kinesin binding|structural molecule activity	p.A704T(11)		breast(3)|central_nervous_system(2)|cervix(3)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(12)|large_intestine(1)|lung(20)|ovary(3)|prostate(9)|skin(3)|urinary_tract(1)	62		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000174)|all_lung(284;0.000234)|Renal(390;0.000518)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.63e-06)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		GGCCGAGAAGGCCGAGGTGGC	0.657000													4	30					0	0	1	0	0
COL1A1	1277	broad.mit.edu	37	17	48267454	48267454	+	Missense_Mutation	SNP	G	G	C	rs1800214		TCGA-55-8513-01A-11D-2393-08	TCGA-55-8513-10A-01D-2393-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84e1f714-997a-48ce-b614-97d586d957d9	e0e827ff-774c-4620-aa0a-7fbcfb54d4e4	g.chr17:48267454G>C	ENST00000225964.5	-	36	2585	c.2467C>G	c.(2467-2469)Cct>Gct	p.P823A		NM_000088.3	NP_000079.2	P02452	CO1A1_HUMAN	collagen, type I, alpha 1	823	Triple-helical region.		P -> A (in dbSNP:rs1800214).		axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(429)	NS(1)|breast(3)|central_nervous_system(8)|endometrium(3)|kidney(4)|large_intestine(17)|liver(3)|lung(18)|ovary(1)|pancreas(1)|prostate(4)|skin(4)|upper_aerodigestive_tract(3)|urinary_tract(1)	71					Collagenase(DB00048)|Palifermin(DB00039)	TTAGCACCAGGTTGGCCGTCA	0.642000			T	"""PDGFB, USP6"""	"""dermatofibrosarcoma protuberans, aneurysmal bone cyst """		Osteogenesis imperfecta						6	98					0	0	1	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70713586	70713586	+	RNA	SNP	T	T	G	rs150958502	by1000genomes	TCGA-55-8513-01A-11D-2393-08	TCGA-55-8513-10A-01D-2393-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84e1f714-997a-48ce-b614-97d586d957d9	e0e827ff-774c-4620-aa0a-7fbcfb54d4e4	g.chr14:70713586T>G	ENST00000530196.1	-	0	932					NR_003951.1																						GGAAAACATTTCCTTGATTCC	0.373000													6	127					0	0	1	0	0
KRT7	3855	broad.mit.edu	37	12	52629060	52629060	+	Missense_Mutation	SNP	G	G	A	rs117913744	byFrequency	TCGA-55-8513-01A-11D-2393-08	TCGA-55-8513-10A-01D-2393-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84e1f714-997a-48ce-b614-97d586d957d9	e0e827ff-774c-4620-aa0a-7fbcfb54d4e4	g.chr12:52629060G>A	ENST00000331817.5	+	2	629	c.446G>A	c.(445-447)cGg>cAg	p.R149Q		NM_005556.3	NP_005547.3	P08729	K2C7_HUMAN	keratin 7	149	Coil 1B.|Rod.				cytoskeleton organization|DNA replication|interphase|interspecies interaction between organisms|regulation of translation	Golgi apparatus|keratin filament|nucleus	protein binding|structural molecule activity			endometrium(1)|kidney(1)|large_intestine(3)|lung(5)|prostate(2)|stomach(1)|urinary_tract(1)	14				BRCA - Breast invasive adenocarcinoma(357;0.105)		GCTGGCCTTCGGGGTCAGCTT	0.612000													4	67					0	0	1	0	0
ANKRD30BP2	149992	broad.mit.edu	37	21	14414855	14414855	+	RNA	SNP	A	A	G	rs141732548	by1000genomes	TCGA-55-8513-01A-11D-2393-08	TCGA-55-8513-10A-01D-2393-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84e1f714-997a-48ce-b614-97d586d957d9	e0e827ff-774c-4620-aa0a-7fbcfb54d4e4	g.chr21:14414855A>G	ENST00000507941.1	+	0	95																											GCCAATGGCCATGCAGAAGTA	0.448000													8	68					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179579037	179579037	+	Missense_Mutation	SNP	C	C	T			TCGA-55-8513-01A-11D-2393-08	TCGA-55-8513-10A-01D-2393-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84e1f714-997a-48ce-b614-97d586d957d9	e0e827ff-774c-4620-aa0a-7fbcfb54d4e4	g.chr2:179579037C>T	ENST00000589042.1	-	91	26688	c.26464G>A	c.(26464-26466)Gcc>Acc	p.A8822T	TTN_ENST00000591111.1_Missense_Mutation_p.A8505T|TTN_ENST00000342175.6_Intron|TTN_ENST00000359218.5_Intron|TTN_ENST00000460472.2_Intron|TTN-AS1_ENST00000585451.1_RNA|TTN_ENST00000342992.6_Missense_Mutation_p.A7578T	NM_001267550.1	NP_001254479.1	Q8WZ42	TITIN_HUMAN	titin	8505	Ig-like 71.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			NS(24)|autonomic_ganglia(1)|breast(64)|central_nervous_system(14)|cervix(14)|endometrium(96)|haematopoietic_and_lymphoid_tissue(16)|kidney(91)|large_intestine(303)|liver(1)|lung(595)|ovary(58)|pancreas(17)|prostate(38)|skin(60)|stomach(29)|upper_aerodigestive_tract(1)|urinary_tract(26)	1448			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATAGCGTGGCGAAGCACTCT	0.403000													8	155					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8131015	8131015	+	Missense_Mutation	SNP	C	C	T			TCGA-55-8513-01A-11D-2393-08	TCGA-55-8513-10A-01D-2393-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84e1f714-997a-48ce-b614-97d586d957d9	e0e827ff-774c-4620-aa0a-7fbcfb54d4e4	g.chr19:8131015C>T	ENST00000600128.1	-	64	8632	c.8218G>A	c.(8218-8220)Gtc>Atc	p.V2740I	FBN3_ENST00000601739.1_Missense_Mutation_p.V2740I|FBN3_ENST00000270509.2_Missense_Mutation_p.V2740I			Q75N90	FBN3_HUMAN	fibrillin 3	2740						proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			NS(1)|breast(9)|central_nervous_system(2)|cervix(1)|endometrium(11)|haematopoietic_and_lymphoid_tissue(2)|kidney(8)|large_intestine(15)|lung(53)|ovary(7)|pancreas(2)|prostate(3)|skin(10)|stomach(1)|upper_aerodigestive_tract(5)|urinary_tract(2)	132						CGGACGATGACGTAGCGGATC	0.682000													5	67					0	0	1	0	0
PNPLA1	285848	broad.mit.edu	37	6	36260895	36260895	+	Missense_Mutation	SNP	C	C	T			TCGA-55-8513-01A-11D-2393-08	TCGA-55-8513-10A-01D-2393-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84e1f714-997a-48ce-b614-97d586d957d9	e0e827ff-774c-4620-aa0a-7fbcfb54d4e4	g.chr6:36260895C>T	ENST00000394571.2	+	3	496	c.496C>T	c.(496-498)Cgc>Tgc	p.R166C	PNPLA1_ENST00000388715.3_Missense_Mutation_p.R71C|PNPLA1_ENST00000312917.5_Missense_Mutation_p.R71C	NM_001145717.1	NP_001139189.2	Q8N8W4	PLPL1_HUMAN	patatin-like phospholipase domain containing 1	166	Patatin.				lipid catabolic process		hydrolase activity			breast(1)|kidney(1)|large_intestine(4)|lung(9)|pancreas(1)|skin(4)|upper_aerodigestive_tract(2)	22						CCCGACTTACCGCGGTGTGGT	0.647000													5	82					0	0	1	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274518	39274518	+	Missense_Mutation	SNP	C	C	T	rs9897031	by1000genomes	TCGA-55-8513-01A-11D-2393-08	TCGA-55-8513-10A-01D-2393-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84e1f714-997a-48ce-b614-97d586d957d9	e0e827ff-774c-4620-aa0a-7fbcfb54d4e4	g.chr17:39274518C>T	ENST00000391413.2	-	1	88	c.50G>A	c.(49-51)cGa>cAa	p.R17Q		NM_033059.3	NP_149048.2	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	17	27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].			R -> Q (in Ref. 1; CAC27583 and 3; AAI26132/AAI30563).		keratin filament				endometrium(12)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|lung(8)|prostate(5)|skin(1)	33		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			GCAGAGGTCTCGGCCACAGCC	0.592000													4	40					0	0	1	0	0
AFM	173	broad.mit.edu	37	4	74357779	74357779	+	Missense_Mutation	SNP	C	C	T			TCGA-55-8513-01A-11D-2393-08	TCGA-55-8513-10A-01D-2393-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84e1f714-997a-48ce-b614-97d586d957d9	e0e827ff-774c-4620-aa0a-7fbcfb54d4e4	g.chr4:74357779C>T	ENST00000226355.3	+	8	1127	c.1034C>T	c.(1033-1035)gCt>gTt	p.A345V		NM_001133.2	NP_001124.1	P43652	AFAM_HUMAN	afamin	345	Albumin 2.				vitamin transport		vitamin E binding			breast(2)|central_nervous_system(2)|endometrium(2)|kidney(1)|large_intestine(8)|lung(9)|ovary(2)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(2)	32	Breast(15;0.00102)		Epithelial(6;5.69e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|all cancers(17;0.000555)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			GAACGAGATGCTGACCCAGAC	0.323000													6	118					0	0	1	0	0
RRN3P2	653390	broad.mit.edu	37	16	29110458	29110458	+	RNA	SNP	T	T	C	rs151074589	by1000genomes	TCGA-55-8513-01A-11D-2393-08	TCGA-55-8513-10A-01D-2393-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84e1f714-997a-48ce-b614-97d586d957d9	e0e827ff-774c-4620-aa0a-7fbcfb54d4e4	g.chr16:29110458T>C	ENST00000564580.1	+	0	1131																		p.W375R(25)									GAATTTTGAGTGGATAGTGAT	0.328000													5	77					0	0	1	0	0
NID1	4811	broad.mit.edu	37	1	236141178	236141178	+	Missense_Mutation	SNP	C	C	T			TCGA-55-8513-01A-11D-2393-08	TCGA-55-8513-10A-01D-2393-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84e1f714-997a-48ce-b614-97d586d957d9	e0e827ff-774c-4620-aa0a-7fbcfb54d4e4	g.chr1:236141178C>T	ENST00000264187.6	-	20	3815	c.3733G>A	c.(3733-3735)Gaa>Aaa	p.E1245K	NID1_ENST00000366595.3_Missense_Mutation_p.E1112K	NM_002508.2	NP_002499.2	P14543	NID1_HUMAN	nidogen 1	1245					cell-matrix adhesion	basement membrane	calcium ion binding			breast(4)|endometrium(9)|kidney(1)|large_intestine(23)|lung(20)|pancreas(1)|prostate(4)|skin(3)|urinary_tract(1)	66	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	CATTTCTGTTCGATACAGTCA	0.507000													6	104					0	0	1	0	0
FYN	2534	broad.mit.edu	37	6	112021448	112021448	+	Missense_Mutation	SNP	G	G	A			TCGA-55-8513-01A-11D-2393-08	TCGA-55-8513-10A-01D-2393-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84e1f714-997a-48ce-b614-97d586d957d9	e0e827ff-774c-4620-aa0a-7fbcfb54d4e4	g.chr6:112021448G>A	ENST00000354650.3	-	9	1327	c.721C>T	c.(721-723)Cgc>Tgc	p.R241C	FYN_ENST00000229471.4_Intron|FYN_ENST00000368678.4_Intron|FYN_ENST00000229470.5_Intron|FYN_ENST00000476769.2_5'UTR|FYN_ENST00000538466.1_Intron|FYN_ENST00000368682.3_Intron|FYN_ENST00000356013.2_Intron|FYN_ENST00000368667.2_Missense_Mutation_p.R241C	NM_002037.5	NP_002028.1	P06241	FYN_HUMAN	FYN oncogene related to SRC, FGR, YES	241	SH2.				axon guidance|calcium ion transport|feeding behavior|interspecies interaction between organisms|intracellular protein kinase cascade|learning|leukocyte migration|platelet activation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytosol|endosome|plasma membrane	ATP binding|glycoprotein binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity			central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(6)|lung(17)|pancreas(1)|skin(1)|upper_aerodigestive_tract(1)	30		all_cancers(87;1.37e-05)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.00125)|Colorectal(196;0.0211)		all cancers(137;0.0451)|OV - Ovarian serous cystadenocarcinoma(136;0.0476)|Epithelial(106;0.102)	Dasatinib(DB01254)	ACTACTAGGCGGCAGCAGAGA	0.512000													7	99					0	0	1	0	0
ANKRD20A8P	729171	broad.mit.edu	37	2	95513688	95513689	+	RNA	INS	-	-	TA			TCGA-55-8513-01A-11D-2393-08	TCGA-55-8513-10A-01D-2393-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84e1f714-997a-48ce-b614-97d586d957d9	e0e827ff-774c-4620-aa0a-7fbcfb54d4e4	g.chr2:95513688_95513689insTA	ENST00000432432.2	-	0	850					NR_040113.1																						CTCACCTAATGTATAAGATGGA	0.327													10	253	---	---	---	---					
ZNF876P	642280	broad.mit.edu	37	4	212236	212236	+	RNA	DEL	A	A	-	rs80061878		TCGA-55-8513-01A-11D-2393-08	TCGA-55-8513-10A-01D-2393-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84e1f714-997a-48ce-b614-97d586d957d9	e0e827ff-774c-4620-aa0a-7fbcfb54d4e4	g.chr4:212236delA	ENST00000356347.3	+	0	172					NR_027481.1																						ctaaaaatacaaaaaaaaaaa	0.493													2	4	---	---	---	---					
HLA-V	352962	broad.mit.edu	37	6	29760353	29760373	+	RNA	DEL	GCGGGCGCCGTGGATGGAGCA	GCGGGCGCCGTGGATGGAGCA	-	rs74661005	by1000genomes	TCGA-55-8513-01A-11D-2393-08	TCGA-55-8513-10A-01D-2393-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84e1f714-997a-48ce-b614-97d586d957d9	e0e827ff-774c-4620-aa0a-7fbcfb54d4e4	g.chr6:29760353_29760373delGCGGGCGCCGTGGATGGAGCA	ENST00000457107.1	+	0	223_243																											GGATGGAGCCGCGGGCGCCGTGGATGGAGCAGGAGGGGCCG	0.674													5	11	---	---	---	---					
RP11-252A24.2	0	broad.mit.edu	37	16	74372915	74372915	+	RNA	DEL	T	T	-	rs67181940		TCGA-55-8513-01A-11D-2393-08	TCGA-55-8513-10A-01D-2393-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	84e1f714-997a-48ce-b614-97d586d957d9	e0e827ff-774c-4620-aa0a-7fbcfb54d4e4	g.chr16:74372915delT	ENST00000429810.2	-	0	1404																											ACGTAGtttgttttttttttt	0.438													4	2	---	---	---	---