Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ABCA3	21	hgsc.bcm.edu	36	16	2276769	2276769	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	2276769	2276769	ABCA3	16	G	G	A	45
ADAMTS13	11093	hgsc.bcm.edu	36	9	135299848	135299848	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	135299848	135299848	ADAMTS13	9	G	G	C	34
AGPAT6	137964	hgsc.bcm.edu	36	8	41586410	41586410	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	41586410	41586410	AGPAT6	8	C	C	A	17
ANGPTL2	23452	hgsc.bcm.edu	36	9	128910156	128910156	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	128910156	128910156	ANGPTL2	9	G	G	T	47
ANGPTL2	23452	hgsc.bcm.edu	36	9	128910160	128910160	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	128910160	128910160	ANGPTL2	9	G	G	A	33
ARHGAP20	57569	hgsc.bcm.edu	36	11	109955430	109955431	+	Frame_Shift_Del	DEL	AG	AG	-	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	AG	AG	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	109955430	109955431	ARHGAP20	11	AG	AG	-	3
ATP8B3	148229	hgsc.bcm.edu	36	19	1734212	1734212	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	1734212	1734212	ATP8B3	19	G	G	A	45
B3GAT1	27087	hgsc.bcm.edu	36	11	133757974	133757974	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	133757974	133757974	B3GAT1	11	A	A	G	16
BOC	91653	hgsc.bcm.edu	36	3	114481502	114481502	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	114481502	114481502	BOC	3	C	C	A	19
C17orf53	78995	hgsc.bcm.edu	36	17	39581475	39581475	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	39581475	39581475	C17orf53	17	C	C	-	30
CABIN1	23523	hgsc.bcm.edu	36	22	22813449	22813449	+	Indel	Indel	T	T	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Indel	Indel	22813449	22813449	CABIN1	22	T	T	A	52
CACNG3	10368	hgsc.bcm.edu	36	16	24265611	24265611	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	24265611	24265611	CACNG3	16	C	C	A	19
CCDC60	160777	hgsc.bcm.edu	36	12	118427370	118427370	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	118427370	118427370	CCDC60	12	G	G	A	45
CCDC93	54520	hgsc.bcm.edu	36	2	118422187	118422187	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	118422187	118422187	CCDC93	2	C	C	T	29
CD79A	973	hgsc.bcm.edu	36	19	47076886	47076886	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	47076886	47076886	CD79A	19	G	G	A	45
CDC27	996	hgsc.bcm.edu	36	17	42571159	42571159	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	42571159	42571159	CDC27	17	A	A	C	2
CDK11B	984	hgsc.bcm.edu	36	1	1640657	1640657	+	Splice_Site_SNP	SNP	A	A	G	rs1059830	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	1640657	1640657	CDK11B	1	A	A	G	8
CDH1	999	hgsc.bcm.edu	36	16	67403201	67403201	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	67403201	67403201	CDH1	16	A	A	G	16
CDH23	64072	hgsc.bcm.edu	36	10	73131793	73131793	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	73131793	73131793	CDH23	10	T	T	G	55
CEACAM18	729767	hgsc.bcm.edu	36	19	56673604	56673604	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	56673604	56673604	CEACAM18	19	C	C	T	19
CELSR3	1951	hgsc.bcm.edu	36	3	48659350	48659350	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	48659350	48659350	CELSR3	3	C	C	T	28
CFP	5199	hgsc.bcm.edu	36	X	47374178	47374178	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	47374178	47374178	CFP	23	C	C	T	32
CHRNA2	1135	hgsc.bcm.edu	36	8	27377141	27377141	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	27377141	27377141	CHRNA2	8	C	C	A	31
DLC1	10395	hgsc.bcm.edu	36	8	12992135	12992136	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	12992135	12992136	DLC1	8	-	-	T	32
DOCK6	57572	hgsc.bcm.edu	36	19	11172647	11172647	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	11172647	11172647	DOCK6	19	G	G	A	43
E2F2	1870	hgsc.bcm.edu	36	1	23709034	23709034	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	23709034	23709034	E2F2	1	C	C	A	17
ECE2	9718	hgsc.bcm.edu	36	3	185484322	185484322	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	185484322	185484322	ECE2	3	G	G	T	39
EHD1	10938	hgsc.bcm.edu	36	11	64398552	64398552	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	64398552	64398552	EHD1	11	T	T	-	55
ELF4	2000	hgsc.bcm.edu	36	X	129032864	129032864	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	129032864	129032864	ELF4	23	A	A	G	9
F10	2159	hgsc.bcm.edu	36	13	112851787	112851787	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	112851787	112851787	F10	13	C	C	A	21
F11	2160	hgsc.bcm.edu	36	4	187431249	187431249	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	187431249	187431249	F11	4	A	A	T	7
FAM70B	348013	hgsc.bcm.edu	36	13	113644828	113644828	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	113644828	113644828	FAM70B	13	G	G	A	37
FARSA	2193	hgsc.bcm.edu	36	19	12902253	12902253	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	12902253	12902253	FARSA	19	A	A	G	6
FBXW7	55294	hgsc.bcm.edu	36	4	153468834	153468834	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	153468834	153468834	FBXW7	4	C	C	T	19
GABRB1	2560	hgsc.bcm.edu	36	4	47122715	47122715	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	47122715	47122715	GABRB1	4	G	G	C	33
GALNT8	26290	hgsc.bcm.edu	36	12	4700252	4700252	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	4700252	4700252	GALNT8	12	A	A	G	9
GNPAT	8443	hgsc.bcm.edu	36	1	229468420	229468420	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	229468420	229468420	GNPAT	1	A	A	C	11
GRIPAP1	56850	hgsc.bcm.edu	36	X	48716510	48716510	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	48716510	48716510	GRIPAP1	23	C	C	T	26
GRIPAP1	56850	hgsc.bcm.edu	36	X	48738643	48738643	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	48738643	48738643	GRIPAP1	23	C	C	T	19
GRLF1	2909	hgsc.bcm.edu	36	19	52114999	52114999	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	52114999	52114999	GRLF1	19	C	C	A	23
HINT2	84681	hgsc.bcm.edu	36	9	35803088	35803088	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	35803088	35803088	HINT2	9	A	A	T	14
HTR5A	3361	hgsc.bcm.edu	36	7	154494257	154494257	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	154494257	154494257	HTR5A	7	G	G	A	40
INSC	387755	hgsc.bcm.edu	36	11	15203905	15203906	+	Frame_Shift_Del	DEL	CT	CT	-	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	CT	CT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	15203905	15203906	INSC	11	CT	CT	-	24
KATNA1	11104	hgsc.bcm.edu	36	6	149961129	149961129	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	149961129	149961129	KATNA1	6	G	G	C	33
KCNA4	3739	hgsc.bcm.edu	36	11	29990204	29990204	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	29990204	29990204	KCNA4	11	T	T	C	58
KIF24	347240	hgsc.bcm.edu	36	9	34246771	34246771	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	34246771	34246771	KIF24	9	T	T	G	50
KIRREL3	84623	hgsc.bcm.edu	36	11	125810397	125810397	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	125810397	125810397	KIRREL3	11	T	T	C	62
L1CAM	3897	hgsc.bcm.edu	36	X	152783482	152783482	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	152783482	152783482	L1CAM	23	T	T	G	49
LEPRE1	64175	hgsc.bcm.edu	36	1	42985635	42985635	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	42985635	42985635	LEPRE1	1	T	T	-	50
LPCAT1	79888	hgsc.bcm.edu	36	5	1542918	1542919	+	Frame_Shift_Ins	INS	-	-	CC	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	1542918	1542919	LPCAT1	5	-	-	CC	46
MAGEC3	139081	hgsc.bcm.edu	36	X	140812334	140812334	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	140812334	140812334	MAGEC3	23	A	A	G	9
MAP1A	4130	hgsc.bcm.edu	36	15	41608588	41608588	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	41608588	41608588	MAP1A	15	T	T	A	59
MEP1B	4225	hgsc.bcm.edu	36	18	28049142	28049142	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	28049142	28049142	MEP1B	18	G	G	C	36
MUS81	80198	hgsc.bcm.edu	36	11	65389356	65389356	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	65389356	65389356	MUS81	11	C	C	G	17
MYH1	4619	hgsc.bcm.edu	36	17	10340195	10340195	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	10340195	10340195	MYH1	17	C	C	A	30
NAGLU	4669	hgsc.bcm.edu	36	17	37944271	37944271	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	37944271	37944271	NAGLU	17	G	G	-	38
NCKAP5	344148	hgsc.bcm.edu	36	2	133258186	133258186	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	133258186	133258186	NCKAP5	2	T	T	A	54
NDUFAF3	25915	hgsc.bcm.edu	36	3	49035375	49035375	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	49035375	49035375	NDUFAF3	3	A	A	C	8
NFXL1	152518	hgsc.bcm.edu	36	4	47548694	47548694	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	47548694	47548694	NFXL1	4	C	C	T	19
NOL6	65083	hgsc.bcm.edu	36	9	33459658	33459658	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	33459658	33459658	NOL6	9	A	A	C	15
NR1H3	10062	hgsc.bcm.edu	36	11	47237984	47237984	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	47237984	47237984	NR1H3	11	G	G	-	34
NUP188	23511	hgsc.bcm.edu	36	9	130801329	130801329	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	130801329	130801329	NUP188	9	G	G	T	46
NUP85	79902	hgsc.bcm.edu	36	17	70743280	70743280	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	70743280	70743280	NUP85	17	G	G	C	33
ODZ4	26011	hgsc.bcm.edu	36	11	78050282	78050282	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	78050282	78050282	ODZ4	11	C	C	-	17
PCSK1	5122	hgsc.bcm.edu	36	5	95754502	95754502	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	95754502	95754502	PCSK1	5	G	G	A	34
PDZD3	79849	hgsc.bcm.edu	36	11	118564416	118564417	+	In_Frame_Ins	INS	-	-	TCATAA	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Ins	INS	118564416	118564417	PDZD3	11	-	-	TCATAA	28
PDZK1IP1	10158	hgsc.bcm.edu	36	1	47428170	47428170	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	47428170	47428170	PDZK1IP1	1	T	T	C	51
PEG3	5178	hgsc.bcm.edu	36	19	62019829	62019829	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	62019829	62019829	PEG3	19	C	C	T	19
PIGB	9488	hgsc.bcm.edu	36	15	53418802	53418802	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	53418802	53418802	PIGB	15	T	T	A	63
PIGO	84720	hgsc.bcm.edu	36	9	35081522	35081523	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	35081522	35081523	PIGO	9	-	-	G	59
PRSS53	339105	hgsc.bcm.edu	36	16	31005709	31005709	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	31005709	31005709	PRSS53	16	G	G	T	48
PPHLN1	51535	hgsc.bcm.edu	36	12	41055006	41055006	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	41055006	41055006	PPHLN1	12	G	G	C	35
PTPN12	5782	hgsc.bcm.edu	36	7	77004876	77004876	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	77004876	77004876	PTPN12	7	A	A	C	10
RNFT2	84900	hgsc.bcm.edu	36	12	115771534	115771534	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	115771534	115771534	RNFT2	12	G	G	C	42
SEC24B	10427	hgsc.bcm.edu	36	4	110635355	110635355	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	110635355	110635355	SEC24B	4	A	A	G	16
SH3PXD2A	9644	hgsc.bcm.edu	36	10	105376916	105376916	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	105376916	105376916	SH3PXD2A	10	C	C	A	26
SLC12A5	57468	hgsc.bcm.edu	36	20	44099338	44099338	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	44099338	44099338	SLC12A5	20	C	C	T	26
SLC12A6	9990	hgsc.bcm.edu	36	15	32330137	32330141	+	Frame_Shift_Del	DEL	GGTCA	GGTCA	-	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	GGTCA	GGTCA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	32330137	32330141	SLC12A6	15	GGTCA	GGTCA	-	47
SLC1A5	6510	hgsc.bcm.edu	36	19	51972103	51972103	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	51972103	51972103	SLC1A5	19	T	T	G	49
SLC34A1	6569	hgsc.bcm.edu	36	5	176745887	176745887	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	176745887	176745887	SLC34A1	5	A	A	C	12
SLC5A6	8884	hgsc.bcm.edu	36	2	27281193	27281193	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	27281193	27281193	SLC5A6	2	A	A	G	11
SMARCAL1	50485	hgsc.bcm.edu	36	2	217020051	217020051	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	217020051	217020051	SMARCAL1	2	G	G	A	38
SNX19	399979	hgsc.bcm.edu	36	11	130255845	130255845	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	130255845	130255845	SNX19	11	A	A	-	9
TAF6	6878	hgsc.bcm.edu	36	7	99549266	99549266	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	99549266	99549266	TAF6	7	C	C	T	22
TBX4	9496	hgsc.bcm.edu	36	17	56915159	56915159	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	56915159	56915159	TBX4	17	C	C	T	22
TMEM181	57583	hgsc.bcm.edu	36	6	158972405	158972405	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	158972405	158972405	TMEM181	6	T	T	G	61
TNFRSF10D	8793	hgsc.bcm.edu	36	8	23059176	23059176	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	23059176	23059176	TNFRSF10D	8	C	C	A	26
TNFRSF1A	7132	hgsc.bcm.edu	36	12	6312834	6312834	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	6312834	6312834	TNFRSF1A	12	G	G	C	45
TP53	7157	hgsc.bcm.edu	36	17	7519252	7519252	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	7519252	7519252	TP53	17	A	A	G	5
TRAF1	7185	hgsc.bcm.edu	36	9	122711475	122711476	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	122711475	122711476	TRAF1	9	-	-	G	3
TRIM65	201292	hgsc.bcm.edu	36	17	71398629	71398629	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	71398629	71398629	TRIM65	17	G	G	-	34
TSPYL1	7259	hgsc.bcm.edu	36	6	116707014	116707014	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	116707014	116707014	TSPYL1	6	C	C	A	29
UBE3C	9690	hgsc.bcm.edu	36	7	156716773	156716773	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	156716773	156716773	UBE3C	7	G	G	C	46
USO1	8615	hgsc.bcm.edu	36	4	76940641	76940641	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	76940641	76940641	USO1	4	C	C	G	17
USO1	8615	hgsc.bcm.edu	36	4	76940643	76940643	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	76940643	76940643	USO1	4	T	T	-	51
VSIG2	23584	hgsc.bcm.edu	36	11	124122712	124122712	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	124122712	124122712	VSIG2	11	C	C	G	22
WBSCR22	114049	hgsc.bcm.edu	36	7	72749951	72749951	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	72749951	72749951	WBSCR22	7	G	G	A	38
ZNF236	7776	hgsc.bcm.edu	36	18	72690555	72690555	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	72690555	72690555	ZNF236	18	T	T	A	56
ZNF582	147948	hgsc.bcm.edu	36	19	61587606	61587606	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1337-01	TCGA-04-1337-11	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	61587606	61587606	ZNF582	19	G	G	C	36