Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context ZNF595 152687 genome.wustl.edu 36 4 49360 49360 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 49360 49360 ZNF595 4 C C A 30 EPB41L3 23136 genome.wustl.edu 36 18 5435240 5435240 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 5435240 5435240 EPB41L3 18 G G A 40 OR56A1 120796 genome.wustl.edu 36 11 6005123 6005123 + Missense_Mutation SNP A A C novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 6005123 6005123 OR56A1 11 A A C 13 TP53 7157 genome.wustl.edu 36 17 7517867 7517867 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7517867 7517867 TP53 17 C C T 22 CPNE9 151835 genome.wustl.edu 36 3 9743379 9743379 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 9743379 9743379 CPNE9 3 G G A 40 OR1I1 126370 genome.wustl.edu 36 19 15059451 15059451 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 15059451 15059451 OR1I1 19 C C T 19 CHERP 10523 genome.wustl.edu 36 19 16502652 16502652 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 16502652 16502652 CHERP 19 C C A 32 SPATA21 374955 genome.wustl.edu 36 1 16621066 16621066 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 16621066 16621066 SPATA21 1 C C T 19 PADI2 11240 genome.wustl.edu 36 1 17269215 17269215 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 17269215 17269215 PADI2 1 G G T 45 ENSG00000215398 0 genome.wustl.edu 36 14 18187185 18187185 + Nonsense_Mutation SNP C C A novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 18187185 18187185 ENSG00000215398 14 C C A 29 RHOB 388 genome.wustl.edu 36 2 20511087 20511087 + Missense_Mutation SNP T T G novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20511087 20511087 RHOB 2 T T G 58 CAD 790 genome.wustl.edu 36 2 27309790 27309790 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 27309790 27309790 CAD 2 G G A 39 HM13 81502 genome.wustl.edu 36 20 29606245 29606245 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 29606245 29606245 HM13 20 G G A 37 NBEA 26960 genome.wustl.edu 36 13 34528261 34528261 + Missense_Mutation SNP A A T novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 34528261 34528261 NBEA 13 A A T 1 STARD3NL 83930 genome.wustl.edu 36 7 38223158 38223158 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 38223158 38223158 STARD3NL 7 C C T 19 BUB1B 701 genome.wustl.edu 36 15 38297101 38297101 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 38297101 38297101 BUB1B 15 C C T 31 SCN10A 6336 genome.wustl.edu 36 3 38730565 38730565 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 38730565 38730565 SCN10A 3 A A G 16 MAOA 4128 genome.wustl.edu 36 X 43456951 43456951 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 43456951 43456951 MAOA 23 C C A 18 LAMB2 3913 genome.wustl.edu 36 3 49141237 49141237 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 49141237 49141237 LAMB2 3 C C T 27 STARD6 147323 genome.wustl.edu 36 18 50105217 50105217 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 50105217 50105217 STARD6 18 A A G 8 UNC13C 440279 genome.wustl.edu 36 15 52343746 52343746 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 52343746 52343746 UNC13C 15 G G C 33 ARID4A 5926 genome.wustl.edu 36 14 57884344 57884344 + Missense_Mutation SNP C C G novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 57884344 57884344 ARID4A 14 C C G 30 GPHN 10243 genome.wustl.edu 36 14 66705481 66705481 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 66705481 66705481 GPHN 14 C C T 24 AQP7P1 375719 genome.wustl.edu 36 9 66963040 66963040 + Missense_Mutation SNP G G T novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 66963040 66963040 AQP7P1 9 G G T 36 ARHGAP25 9938 genome.wustl.edu 36 2 68903017 68903017 + Silent SNP G G T novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 68903017 68903017 ARHGAP25 2 G G T 37 GCLM 2730 genome.wustl.edu 36 1 94134880 94134880 + Missense_Mutation SNP T T C novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 94134880 94134880 GCLM 1 T T C 54 SLC17A8 246213 genome.wustl.edu 36 12 99308981 99308981 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 99308981 99308981 SLC17A8 12 G G A 45 ANGPT1 284 genome.wustl.edu 36 8 108417653 108417653 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 108417653 108417653 ANGPT1 8 A A G 3 GAP43 2596 genome.wustl.edu 36 3 116922346 116922346 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 116922346 116922346 GAP43 3 C C T 18 YSK4 80122 genome.wustl.edu 36 2 135495840 135495840 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 135495840 135495840 YSK4 2 C C T 17 HHIP 64399 genome.wustl.edu 36 4 145848838 145848838 + Missense_Mutation SNP C C A novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 145848838 145848838 HHIP 4 C C A 21 MLLT4 4301 genome.wustl.edu 36 6 168094982 168094982 + Missense_Mutation SNP A A G novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 168094982 168094982 MLLT4 6 A A G 4 FAF2 23197 genome.wustl.edu 36 5 175853835 175853835 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 175853835 175853835 FAF2 5 G G A 35 CPS1 1373 genome.wustl.edu 36 2 211129805 211129805 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 211129805 211129805 CPS1 2 G G A 47 RAB4A 5867 genome.wustl.edu 36 1 227505312 227505312 + Missense_Mutation SNP G G A novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 227505312 227505312 RAB4A 1 G G A 38 OR14K1 343170 genome.wustl.edu 36 1 245968742 245968742 + Missense_Mutation SNP A A T novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 245968742 245968742 OR14K1 1 A A T 10 ADH6 130 genome.wustl.edu 36 4 100350649 100350653 + Indel Indel NACTG -- NACTG novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 - - - ACTG ACTG ACTG Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx WashU Indel Indel 100350649 100350653 ADH6 4 NACTG -- NACTG 17 LOC100131547 genome.wustl.edu 36 12 14658721 14658721 + Splice_Site_SNP SNP A A G novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 A A A G A A Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 14658721 14658721 LOC100131547 12 A A G 7 KIF17 57576 genome.wustl.edu 36 1 20889296 20889296 + Silent SNP C C T Unknown TCGA-04-1348-01 TCGA-04-1348-11 C C C T C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 20889296 20889296 KIF17 1 C C T 27 WNT3A 89780 genome.wustl.edu 36 1 226277096 226277096 + Silent SNP C C T novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 226277096 226277096 WNT3A 1 C C T 19 MYO1H 283446 genome.wustl.edu 36 12 108361889 108361889 + Missense_Mutation SNP C C T novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 108361889 108361889 MYO1H 12 C C T 27 VEZT 55591 genome.wustl.edu 36 12 94218234 94218234 + Missense_Mutation SNP G G C novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 94218234 94218234 VEZT 12 G G C 48 OR4G2P genome.wustl.edu 36 15 100285023 100285023 + Silent SNP A G G novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 A A G G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 100285023 100285023 OR4G2P 15 A G G 12 ADCY5 111 genome.wustl.edu 36 3 124491420 124491420 + Silent SNP G G A novel Unknown TCGA-04-1348-01 TCGA-04-1348-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 124491420 124491420 ADCY5 3 G G A 39 TTN 7273 genome.wustl.edu 36 2 179100092 179100100 + In_Frame_Del DEL TCAGGGTTG TCAGGGTTG - Unknown TCGA-04-1348-01 TCGA-04-1348-11 TCAGGGTTG TCAGGGTTG TCAGGGTTG - TCAGGGTTG TCAGGGTTG Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU In_Frame_Del DEL 179100092 179100100 TTN 2 TCAGGGTTG TCAGGGTTG - 50