Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
AMPD3	272	hgsc.bcm.edu	36	11	10463033	10463033	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	10463033	10463033	AMPD3	11	G	G	T	42
ANKRD52	283373	hgsc.bcm.edu	36	12	54933797	54933797	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	54933797	54933797	ANKRD52	12	G	G	A	40
C4orf14	84273	hgsc.bcm.edu	36	4	57525376	57525376	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	57525376	57525376	C4orf14	4	C	C	A	30
C9orf50	375759	hgsc.bcm.edu	36	9	131415664	131415664	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	131415664	131415664	C9orf50	9	G	G	C	42
CDH9	1007	hgsc.bcm.edu	36	5	27024186	27024186	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	27024186	27024186	CDH9	5	G	G	A	44
CHD8	57680	hgsc.bcm.edu	36	14	20940066	20940066	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	20940066	20940066	CHD8	14	C	C	A	30
CHN1	1123	hgsc.bcm.edu	36	2	175525161	175525161	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	175525161	175525161	CHN1	2	C	C	G	32
COPS8	10920	hgsc.bcm.edu	36	2	237663282	237663282	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	237663282	237663282	COPS8	2	A	A	G	1
CTNNB1	1499	hgsc.bcm.edu	36	3	41250773	41250773	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	41250773	41250773	CTNNB1	3	G	G	C	43
CXorf22	170063	hgsc.bcm.edu	36	X	35895718	35895718	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	35895718	35895718	CXorf22	23	C	C	T	25
GPR114	221188	hgsc.bcm.edu	36	16	56158066	56158067	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	56158066	56158067	GPR114	16	-	-	G	55
HIVEP1	3096	hgsc.bcm.edu	36	6	12230599	12230599	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	12230599	12230599	HIVEP1	6	G	G	A	33
HNRNPH3	3189	hgsc.bcm.edu	36	10	69771797	69771797	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	69771797	69771797	HNRNPH3	10	G	G	A	47
HOOK3	84376	hgsc.bcm.edu	36	8	42933554	42933554	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	42933554	42933554	HOOK3	8	A	A	C	13
LRP1B	53353	hgsc.bcm.edu	36	2	141341666	141341666	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	141341666	141341666	LRP1B	2	A	A	T	5
MARCO	8685	hgsc.bcm.edu	36	2	119448588	119448588	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	119448588	119448588	MARCO	2	C	C	G	21
MGAT5	4249	hgsc.bcm.edu	36	2	134791632	134791633	+	Frame_Shift_Del	DEL	GA	GA	-	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	GA	GA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	134791632	134791633	MGAT5	2	GA	GA	-	45
MORN1	79906	hgsc.bcm.edu	36	1	2295839	2295839	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	2295839	2295839	MORN1	1	G	G	T	40
OR10W1	81341	hgsc.bcm.edu	36	11	57791172	57791172	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	57791172	57791172	OR10W1	11	G	G	T	34
PAPPA	5069	hgsc.bcm.edu	36	9	118133454	118133454	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	118133454	118133454	PAPPA	9	C	C	A	30
PFN4	375189	hgsc.bcm.edu	36	2	24198905	24198905	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	24198905	24198905	PFN4	2	C	C	T	28
PREP	5550	hgsc.bcm.edu	36	6	105928083	105928083	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	105928083	105928083	PREP	6	C	C	T	21
PSME4	23198	hgsc.bcm.edu	36	2	53947483	53947483	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	53947483	53947483	PSME4	2	C	C	T	25
ROR1	4919	hgsc.bcm.edu	36	1	64287993	64287993	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	64287993	64287993	ROR1	1	C	C	T	19
STAB2	55576	hgsc.bcm.edu	36	12	102679209	102679209	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	102679209	102679209	STAB2	12	C	C	T	19
TMEM132D	121256	hgsc.bcm.edu	36	12	128124502	128124502	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	128124502	128124502	TMEM132D	12	G	G	T	40
TP53	7157	hgsc.bcm.edu	36	17	7519281	7519281	+	Splice_Site_SNP	SNP	T	C	C	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	7519281	7519281	TP53	17	T	C	C	55
TRO	7216	hgsc.bcm.edu	36	X	54973791	54973791	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	54973791	54973791	TRO	23	T	T	G	63
YIPF1	54432	hgsc.bcm.edu	36	1	54104629	54104629	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	54104629	54104629	YIPF1	1	G	G	A	41
ZNF211	10520	hgsc.bcm.edu	36	19	62844913	62844913	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	62844913	62844913	ZNF211	19	G	G	A	39
ZNF333	84449	hgsc.bcm.edu	36	19	14689502	14689502	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1514-01	TCGA-04-1514-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	14689502	14689502	ZNF333	19	G	G	C	34