Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ABCC1	4363	hgsc.bcm.edu	36	16	16037889	16037889	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	16037889	16037889	ABCC1	16	A	A	C	3
AHNAK2	113146	hgsc.bcm.edu	36	14	104475974	104475975	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	104475974	104475975	AHNAK2	14	-	-	G	63
ANKRD17	26057	hgsc.bcm.edu	36	4	74170001	74170001	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	74170001	74170001	ANKRD17	4	C	C	T	21
ARL8A	127829	hgsc.bcm.edu	36	1	200371278	200371278	+	Splice_Site_SNP	SNP	C	C	A	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	200371278	200371278	ARL8A	1	C	C	A	24
ATP13A2	23400	hgsc.bcm.edu	36	1	17191597	17191597	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	17191597	17191597	ATP13A2	1	G	G	C	43
ATP9A	10079	hgsc.bcm.edu	36	20	49689290	49689290	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	49689290	49689290	ATP9A	20	C	C	T	23
C20orf185	359710	hgsc.bcm.edu	36	20	31120364	31120364	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	31120364	31120364	C20orf185	20	T	T	A	58
C2orf18	54978	hgsc.bcm.edu	36	2	26852839	26852839	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	26852839	26852839	C2orf18	2	G	G	T	42
CABLES1	91768	hgsc.bcm.edu	36	18	19087758	19087758	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	19087758	19087758	CABLES1	18	G	G	A	42
CELA1	1990	hgsc.bcm.edu	36	12	50009865	50009866	+	Frame_Shift_Ins	INS	-	-	G	rs17860363	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	50009865	50009866	CELA1	12	-	-	G	11
COL14A1	7373	hgsc.bcm.edu	36	8	121329057	121329057	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	121329057	121329057	COL14A1	8	T	T	C	63
CSNK1A1L	122011	hgsc.bcm.edu	36	13	36577077	36577077	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	36577077	36577077	CSNK1A1L	13	C	C	T	32
CYP26A1	1592	hgsc.bcm.edu	36	10	94825607	94825607	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	94825607	94825607	CYP26A1	10	G	G	C	41
DHX8	1659	hgsc.bcm.edu	36	17	38926649	38926649	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	38926649	38926649	DHX8	17	G	G	T	41
DNMT3B	1789	hgsc.bcm.edu	36	20	30840389	30840389	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	30840389	30840389	DNMT3B	20	C	C	G	21
DOPEY2	9980	hgsc.bcm.edu	36	21	36531450	36531450	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	36531450	36531450	DOPEY2	21	G	G	C	41
FABP3	2170	hgsc.bcm.edu	36	1	31618396	31618396	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	31618396	31618396	FABP3	1	T	T	A	50
FER1L6	654463	hgsc.bcm.edu	36	8	125116842	125116842	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	125116842	125116842	FER1L6	8	C	C	T	25
FKBP9	11328	hgsc.bcm.edu	36	7	32982589	32982589	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	32982589	32982589	FKBP9	7	G	G	A	38
FLVCR2	55640	hgsc.bcm.edu	36	14	75177289	75177289	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	75177289	75177289	FLVCR2	14	C	C	A	29
FMN1	342184	hgsc.bcm.edu	36	15	30878421	30878421	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	30878421	30878421	FMN1	15	C	C	T	21
FOXP3	50943	hgsc.bcm.edu	36	X	49000922	49000922	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	49000922	49000922	FOXP3	23	C	C	T	25
GRIK3	2899	hgsc.bcm.edu	36	1	37044371	37044371	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	37044371	37044371	GRIK3	1	G	G	A	40
GRIN2B	2904	hgsc.bcm.edu	36	12	13608202	13608202	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	13608202	13608202	GRIN2B	12	C	C	T	32
GRIN2B	2904	hgsc.bcm.edu	36	12	13608217	13608217	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	13608217	13608217	GRIN2B	12	C	C	T	24
GTF3C3	9330	hgsc.bcm.edu	36	2	197348113	197348113	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	197348113	197348113	GTF3C3	2	G	G	C	44
IDI2	91734	hgsc.bcm.edu	36	10	1056735	1056735	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	1056735	1056735	IDI2	10	T	T	G	63
IL22	50616	hgsc.bcm.edu	36	12	66933441	66933441	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	66933441	66933441	IL22	12	T	T	C	55
IL28RA	163702	hgsc.bcm.edu	36	1	24356653	24356653	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	24356653	24356653	IL28RA	1	G	G	C	41
KIAA2018	205717	hgsc.bcm.edu	36	3	114860516	114860516	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	114860516	114860516	KIAA2018	3	A	A	G	4
MAGEB1	4112	hgsc.bcm.edu	36	X	30178651	30178651	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	30178651	30178651	MAGEB1	23	C	C	G	24
MAOA	4128	hgsc.bcm.edu	36	X	43488000	43488005	+	In_Frame_Del	DEL	CGTGGG	CGTGGG	-	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	CGTGGG	CGTGGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	43488000	43488005	MAOA	23	CGTGGG	CGTGGG	-	23
MAPRE3	22924	hgsc.bcm.edu	36	2	27102020	27102021	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	27102020	27102021	MAPRE3	2	-	-	C	42
MEF2C	4208	hgsc.bcm.edu	36	5	88054305	88054305	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	88054305	88054305	MEF2C	5	C	C	A	31
MLL5	55904	hgsc.bcm.edu	36	7	104539850	104539850	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	104539850	104539850	MLL5	7	T	T	A	62
MORN1	79906	hgsc.bcm.edu	36	1	2307164	2307164	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	2307164	2307164	MORN1	1	C	C	T	20
MUC16	94025	hgsc.bcm.edu	36	19	8948711	8948711	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	8948711	8948711	MUC16	19	A	A	T	15
NAV1	89796	hgsc.bcm.edu	36	1	200046324	200046324	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	200046324	200046324	NAV1	1	A	A	G	5
NOL8	55035	hgsc.bcm.edu	36	9	94117487	94117487	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	94117487	94117487	NOL8	9	T	T	G	52
OLFM3	118427	hgsc.bcm.edu	36	1	102075049	102075049	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	102075049	102075049	OLFM3	1	T	T	A	55
OR7D2	162998	hgsc.bcm.edu	36	19	9158069	9158069	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	9158069	9158069	OR7D2	19	T	T	A	59
PMFBP1	83449	hgsc.bcm.edu	36	16	70717493	70717493	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	70717493	70717493	PMFBP1	16	G	G	T	47
PRAMEF3	401940	hgsc.bcm.edu	36	1	13203354	13203354	+	Silent	SNP	G	G	C	rs1320957	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	13203354	13203354	PRAMEF3	1	G	G	C	41
PTPDC1	138639	hgsc.bcm.edu	36	9	95899489	95899489	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	95899489	95899489	PTPDC1	9	G	G	C	48
RBBP6	5930	hgsc.bcm.edu	36	16	24486179	24486179	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	24486179	24486179	RBBP6	16	C	C	T	30
RBM20	282996	hgsc.bcm.edu	36	10	112571627	112571628	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	112571627	112571628	RBM20	10	-	-	C	34
RNASE11	122651	hgsc.bcm.edu	36	14	20121908	20121908	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	20121908	20121908	RNASE11	14	A	A	C	7
SCUBE1	80274	hgsc.bcm.edu	36	22	41934105	41934105	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	41934105	41934105	SCUBE1	22	C	C	T	27
SCYL1	57410	hgsc.bcm.edu	36	11	65060098	65060098	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	65060098	65060098	SCYL1	11	C	C	G	17
SETD4	54093	hgsc.bcm.edu	36	21	36342503	36342503	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	36342503	36342503	SETD4	21	C	C	T	31
SIRPD	128646	hgsc.bcm.edu	36	20	1480543	1480543	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	1480543	1480543	SIRPD	20	C	C	T	23
SLC16A9	220963	hgsc.bcm.edu	36	10	61083438	61083438	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	61083438	61083438	SLC16A9	10	C	C	T	18
SLC25A44	9673	hgsc.bcm.edu	36	1	154444402	154444402	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	154444402	154444402	SLC25A44	1	A	A	T	8
SLC26A7	115111	hgsc.bcm.edu	36	8	92424831	92424831	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	92424831	92424831	SLC26A7	8	A	A	T	9
SLC9A5	6553	hgsc.bcm.edu	36	16	65846483	65846483	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	65846483	65846483	SLC9A5	16	G	G	A	39
SMARCAL1	50485	hgsc.bcm.edu	36	2	216988268	216988268	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	216988268	216988268	SMARCAL1	2	C	C	G	24
SORT1	6272	hgsc.bcm.edu	36	1	109658889	109658889	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	109658889	109658889	SORT1	1	G	G	C	42
SPINT4	391253	hgsc.bcm.edu	36	20	43784521	43784521	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	43784521	43784521	SPINT4	20	G	G	A	48
TBC1D21	161514	hgsc.bcm.edu	36	15	71965556	71965556	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	71965556	71965556	TBC1D21	15	G	G	C	46
TFRC	7037	hgsc.bcm.edu	36	3	197266559	197266559	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	197266559	197266559	TFRC	3	T	T	C	49
TIMELESS	8914	hgsc.bcm.edu	36	12	55102188	55102188	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	55102188	55102188	TIMELESS	12	C	C	T	22
TIPRL	261726	hgsc.bcm.edu	36	1	166427328	166427328	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	166427328	166427328	TIPRL	1	A	A	-	8
TMEM39A	55254	hgsc.bcm.edu	36	3	120633692	120633692	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	120633692	120633692	TMEM39A	3	G	G	A	37
TP53	7157	hgsc.bcm.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	C	T	rs28934576	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7517845	7517845	TP53	17	C	C	T	19
UQCRC1	7384	hgsc.bcm.edu	36	3	48613215	48613215	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	48613215	48613215	UQCRC1	3	G	G	C	35
WBP2NL	164684	hgsc.bcm.edu	36	22	40752961	40752961	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	40752961	40752961	WBP2NL	22	G	G	A	34
WDR75	84128	hgsc.bcm.edu	36	2	190048275	190048275	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	190048275	190048275	WDR75	2	G	G	C	41
XPNPEP3	63929	hgsc.bcm.edu	36	22	39652372	39652372	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	39652372	39652372	XPNPEP3	22	G	G	C	34
ZMYND12	84217	hgsc.bcm.edu	36	1	42694165	42694165	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	42694165	42694165	ZMYND12	1	A	A	-	7
ZNF292	23036	hgsc.bcm.edu	36	6	88024767	88024767	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-04-1530-01	TCGA-04-1530-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	88024767	88024767	ZNF292	6	G	G	T	46