Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context SPEN 23013 broad.mit.edu 36 1 16133684 16133684 + Missense_Mutation SNP G G C novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 16133684 16133684 SPEN 1 G G C 35 USP48 84196 broad.mit.edu 36 1 21920755 21920755 + Missense_Mutation SNP T T A novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 21920755 21920755 USP48 1 T T A 61 OPRD1 4985 broad.mit.edu 36 1 29062295 29062295 + Missense_Mutation SNP C C G novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 29062295 29062295 OPRD1 1 C C G 28 CSMD2 114784 broad.mit.edu 36 1 34270780 34270780 + Splice_Site_SNP SNP A A C novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 34270780 34270780 CSMD2 1 A A C 14 MFSD2A 84879 broad.mit.edu 36 1 40207006 40207006 + Splice_Site_SNP SNP T T G novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 40207006 40207006 MFSD2A 1 T T G 59 GSTM5 2949 broad.mit.edu 36 1 110059274 110059274 + Splice_Site_SNP SNP G G A novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 110059274 110059274 GSTM5 1 G G A 33 SELP 6403 broad.mit.edu 36 1 167829531 167829531 + Silent SNP A A G novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 167829531 167829531 SELP 1 A A G 15 ZBTB37 84614 broad.mit.edu 36 1 172106240 172106240 + Missense_Mutation SNP C C A novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 172106240 172106240 ZBTB37 1 C C A 32 CACNA1E 777 broad.mit.edu 36 1 179969302 179969302 + Missense_Mutation SNP G G A novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 179969302 179969302 CACNA1E 1 G G A 40 EDEM3 80267 broad.mit.edu 36 1 182930071 182930071 + Missense_Mutation SNP C C T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 182930071 182930071 EDEM3 1 C C T 28 HMCN1 83872 broad.mit.edu 36 1 184223241 184223241 + Missense_Mutation SNP C C T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 184223241 184223241 HMCN1 1 C C T 21 CRB1 23418 broad.mit.edu 36 1 195583110 195583110 + Missense_Mutation SNP C C T rs62636263 Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 195583110 195583110 CRB1 1 C C T 19 RRP15 51018 broad.mit.edu 36 1 216545005 216545005 + Missense_Mutation SNP C C A novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 216545005 216545005 RRP15 1 C C A 28 HLX 3142 broad.mit.edu 36 1 219122164 219122164 + Missense_Mutation SNP C C G novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 219122164 219122164 HLX 1 C C G 25 OR2T2 401992 broad.mit.edu 36 1 246683636 246683636 + Silent SNP A A C novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 246683636 246683636 OR2T2 1 A A C 14 CALML5 51806 broad.mit.edu 36 10 5531328 5531328 + Missense_Mutation SNP T T C novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 5531328 5531328 CALML5 10 T T C 60 PRKCQ 5588 broad.mit.edu 36 10 6510308 6510308 + Missense_Mutation SNP T T C novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 6510308 6510308 PRKCQ 10 T T C 52 OGDHL 55753 broad.mit.edu 36 10 50623880 50623880 + Silent SNP G G A novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 50623880 50623880 OGDHL 10 G G A 48 JMJD1C 221037 broad.mit.edu 36 10 64645087 64645087 + Silent SNP G G A novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 64645087 64645087 JMJD1C 10 G G A 46 TNKS1BP1 85456 broad.mit.edu 36 11 56833997 56833997 + Missense_Mutation SNP C C A novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56833997 56833997 TNKS1BP1 11 C C A 30 NXF1 10482 broad.mit.edu 36 11 62327610 62327610 + Missense_Mutation SNP T T C novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 62327610 62327610 NXF1 11 T T C 57 LRP5 4041 broad.mit.edu 36 11 67934074 67934074 + Silent SNP C C T rs35298380 Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 67934074 67934074 LRP5 11 C C T 17 MGST1 4257 broad.mit.edu 36 12 16408059 16408059 + Missense_Mutation SNP G G T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 16408059 16408059 MGST1 12 G G T 45 ST8SIA1 6489 broad.mit.edu 36 12 22331372 22331372 + Missense_Mutation SNP G G A novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 22331372 22331372 ST8SIA1 12 G G A 45 C12orf35 55196 broad.mit.edu 36 12 32026322 32026322 + Missense_Mutation SNP C C G novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 32026322 32026322 C12orf35 12 C C G 25 RND1 27289 broad.mit.edu 36 12 47541050 47541050 + Missense_Mutation SNP C C A novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 47541050 47541050 RND1 12 C C A 28 GALNT6 11226 broad.mit.edu 36 12 50039348 50039348 + Silent SNP G G C novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 50039348 50039348 GALNT6 12 G G C 35 ESPL1 9700 broad.mit.edu 36 12 51970987 51970987 + Silent SNP C C G novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 51970987 51970987 ESPL1 12 C C G 22 FGD6 55785 broad.mit.edu 36 12 94128424 94128424 + Missense_Mutation SNP C C A novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 94128424 94128424 FGD6 12 C C A 25 C12orf51 283450 broad.mit.edu 36 12 111228320 111228320 + Nonsense_Mutation SNP C C T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 111228320 111228320 C12orf51 12 C C T 18 ZC3H13 23091 broad.mit.edu 36 13 45461023 45461023 + Missense_Mutation SNP C C G novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 45461023 45461023 ZC3H13 13 C C G 28 ALDH6A1 4329 broad.mit.edu 36 14 73597102 73597102 + Missense_Mutation SNP C C T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 73597102 73597102 ALDH6A1 14 C C T 19 HERC2 8924 broad.mit.edu 36 15 26148035 26148035 + Missense_Mutation SNP G G A novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 26148035 26148035 HERC2 15 G G A 37 SPTBN5 51332 broad.mit.edu 36 15 39932820 39932820 + Nonsense_Mutation SNP G G T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 39932820 39932820 SPTBN5 15 G G T 42 FES 2242 broad.mit.edu 36 15 89237893 89237894 + Missense_Mutation DNP TG TG CC novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 89237893 89237894 FES 15 TG TG CC 55 TMEM204 79652 broad.mit.edu 36 16 1524303 1524303 + Missense_Mutation SNP C C T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 1524303 1524303 TMEM204 16 C C T 27 CHD9 80205 broad.mit.edu 36 16 51748190 51748190 + Nonsense_Mutation SNP C C T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 51748190 51748190 CHD9 16 C C T 25 SLC38A7 55238 broad.mit.edu 36 16 57268820 57268820 + Silent SNP G G A novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 57268820 57268820 SLC38A7 16 G G A 38 LRRC36 55282 broad.mit.edu 36 16 65958639 65958639 + Missense_Mutation SNP C C T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 65958639 65958639 LRRC36 16 C C T 18 EDC4 23644 broad.mit.edu 36 16 66472526 66472526 + Nonsense_Mutation SNP C C T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 66472526 66472526 EDC4 16 C C T 23 ZZEF1 23140 broad.mit.edu 36 17 3900829 3900829 + Missense_Mutation SNP C C G novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 3900829 3900829 ZZEF1 17 C C G 30 DNAH9 1770 broad.mit.edu 36 17 11463638 11463638 + Missense_Mutation SNP G G A novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 11463638 11463638 DNAH9 17 G G A 33 MYO19 80179 broad.mit.edu 36 17 31933900 31933901 + Splice_Site_SNP DNP CA CA GT novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP DNP 31933900 31933901 MYO19 17 CA CA GT 29 MYO19 80179 broad.mit.edu 36 17 31933903 31933903 + Missense_Mutation SNP C C A novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 31933903 31933903 MYO19 17 C C A 23 MYL4 4635 broad.mit.edu 36 17 42652308 42652308 + Missense_Mutation SNP C C A novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 42652308 42652308 MYL4 17 C C A 20 SRSF1 6426 broad.mit.edu 36 17 53438293 53438293 + Missense_Mutation SNP G G T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 53438293 53438293 SRSF1 17 G G T 48 CBX4 8535 broad.mit.edu 36 17 75423079 75423080 + Missense_Mutation DNP CT CT GA novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 75423079 75423080 CBX4 17 CT CT GA 32 MC4R 4160 broad.mit.edu 36 18 56190554 56190554 + Missense_Mutation SNP G G T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56190554 56190554 MC4R 18 G G T 36 SLC1A6 6511 broad.mit.edu 36 19 14940253 14940253 + Missense_Mutation SNP A A C novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 14940253 14940253 SLC1A6 19 A A C 6 POLR2I 5438 broad.mit.edu 36 19 41297578 41297578 + Nonsense_Mutation SNP G G C novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 41297578 41297578 POLR2I 19 G G C 40 ZNF549 256051 broad.mit.edu 36 19 62738325 62738325 + Missense_Mutation SNP G G T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 62738325 62738325 ZNF549 19 G G T 42 TTC15 51112 broad.mit.edu 36 2 3404746 3404746 + Missense_Mutation SNP A A C novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 3404746 3404746 TTC15 2 A A C 6 NCOA1 8648 broad.mit.edu 36 2 24759360 24759360 + Missense_Mutation SNP G G T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 24759360 24759360 NCOA1 2 G G T 35 ZNF513 130557 broad.mit.edu 36 2 27454507 27454507 + Silent SNP T T C novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 27454507 27454507 ZNF513 2 T T C 54 APLF 200558 broad.mit.edu 36 2 68618673 68618673 + Missense_Mutation SNP T T G novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 68618673 68618673 APLF 2 T T G 55 INPP4A 3631 broad.mit.edu 36 2 98537169 98537169 + Missense_Mutation SNP C C G novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 98537169 98537169 INPP4A 2 C C G 19 GCC2 9648 broad.mit.edu 36 2 108482477 108482477 + Missense_Mutation SNP C C G novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 108482477 108482477 GCC2 2 C C G 29 GCA 25801 broad.mit.edu 36 2 162912415 162912415 + Nonsense_Mutation SNP G G T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 162912415 162912415 GCA 2 G G T 47 PTPRN 5798 broad.mit.edu 36 2 219874666 219874666 + Silent SNP C C A novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 219874666 219874666 PTPRN 2 C C A 21 C20orf117 140710 broad.mit.edu 36 20 34901120 34901120 + Missense_Mutation SNP G G C novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 34901120 34901120 C20orf117 20 G G C 38 CSE1L 1434 broad.mit.edu 36 20 47139278 47139278 + Missense_Mutation SNP G G T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 47139278 47139278 CSE1L 20 G G T 48 SALL4 57167 broad.mit.edu 36 20 49840118 49840118 + Missense_Mutation SNP C C T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 49840118 49840118 SALL4 20 C C T 30 LIPI 149998 broad.mit.edu 36 21 14460592 14460592 + Missense_Mutation SNP C C T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 14460592 14460592 LIPI 21 C C T 30 TRIOBP 11078 broad.mit.edu 36 22 36481114 36481114 + Missense_Mutation SNP G G C novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 36481114 36481114 TRIOBP 22 G G C 44 GOLGA4 2803 broad.mit.edu 36 3 37340324 37340324 + Missense_Mutation SNP A A C novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 37340324 37340324 GOLGA4 3 A A C 3 DNAH1 25981 broad.mit.edu 36 3 52361049 52361049 + Missense_Mutation SNP C C A novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 52361049 52361049 DNAH1 3 C C A 24 STAB1 23166 broad.mit.edu 36 3 52513844 52513844 + Missense_Mutation SNP A A G novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 52513844 52513844 STAB1 3 A A G 6 C3orf26 84319 broad.mit.edu 36 3 101363911 101363911 + Missense_Mutation SNP G G C novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 101363911 101363911 C3orf26 3 G G C 35 RARRES1 5918 broad.mit.edu 36 3 159911391 159911391 + Missense_Mutation SNP C C T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 159911391 159911391 RARRES1 3 C C T 19 SI 6476 broad.mit.edu 36 3 166218272 166218272 + Missense_Mutation SNP G G T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 166218272 166218272 SI 3 G G T 41 SAMD7 344658 broad.mit.edu 36 3 171121779 171121779 + Missense_Mutation SNP A A G novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 171121779 171121779 SAMD7 3 A A G 2 TNIK 23043 broad.mit.edu 36 3 172284784 172284784 + Missense_Mutation SNP C C T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 172284784 172284784 TNIK 3 C C T 24 TMEM156 80008 broad.mit.edu 36 4 38671859 38671859 + Missense_Mutation SNP C C A novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 38671859 38671859 TMEM156 4 C C A 21 NKX6-1 4825 broad.mit.edu 36 4 85633579 85633579 + Missense_Mutation SNP C C A novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 85633579 85633579 NKX6-1 4 C C A 30 PALLD 23022 broad.mit.edu 36 4 170056248 170056248 + Silent SNP A A G novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 170056248 170056248 PALLD 4 A A G 10 IRX4 50805 broad.mit.edu 36 5 1932925 1932925 + Silent SNP G G C novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 1932925 1932925 IRX4 5 G G C 46 NNT 23530 broad.mit.edu 36 5 43711491 43711491 + Missense_Mutation SNP A A T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 43711491 43711491 NNT 5 A A T 10 NDST1 3340 broad.mit.edu 36 5 149887837 149887837 + Silent SNP C C G novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 149887837 149887837 NDST1 5 C C G 21 ZNF192 7745 broad.mit.edu 36 6 28224394 28224394 + Missense_Mutation SNP A A G novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 28224394 28224394 ZNF192 6 A A G 8 FGD2 221472 broad.mit.edu 36 6 37096296 37096296 + Missense_Mutation SNP T T G novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 37096296 37096296 FGD2 6 T T G 59 DST 667 broad.mit.edu 36 6 56483971 56483971 + Missense_Mutation SNP T T C novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56483971 56483971 DST 6 T T C 51 MDN1 23195 broad.mit.edu 36 6 90437477 90437477 + Missense_Mutation SNP A A T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 90437477 90437477 MDN1 6 A A T 10 AIM1 202 broad.mit.edu 36 6 107099204 107099204 + Missense_Mutation SNP G G C novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 107099204 107099204 AIM1 6 G G C 35 VNN1 8876 broad.mit.edu 36 6 133046139 133046139 + Missense_Mutation SNP G G C novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 133046139 133046139 VNN1 6 G G C 40 RSPH3 83861 broad.mit.edu 36 6 159340871 159340871 + Silent SNP G G C novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 159340871 159340871 RSPH3 6 G G C 39 EIF3B 8662 broad.mit.edu 36 7 2375837 2375837 + Silent SNP C C T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 2375837 2375837 EIF3B 7 C C T 25 WBSCR17 64409 broad.mit.edu 36 7 70491247 70491247 + Silent SNP C C T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 70491247 70491247 WBSCR17 7 C C T 23 HYAL4 23553 broad.mit.edu 36 7 123295798 123295798 + Missense_Mutation SNP C C G novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 123295798 123295798 HYAL4 7 C C G 20 CCDC136 64753 broad.mit.edu 36 7 128234679 128234679 + Silent SNP G G A novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 128234679 128234679 CCDC136 7 G G A 33 LRGUK 136332 broad.mit.edu 36 7 133509892 133509892 + Silent SNP C C T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 133509892 133509892 LRGUK 7 C C T 30 MTMR9 66036 broad.mit.edu 36 8 11211615 11211615 + Silent SNP C C G novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 11211615 11211615 MTMR9 8 C C G 28 CA3 761 broad.mit.edu 36 8 86539302 86539302 + Silent SNP T T G novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 86539302 86539302 CA3 8 T T G 55 OSR2 116039 broad.mit.edu 36 8 100032059 100032059 + Splice_Site_SNP SNP G G T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 100032059 100032059 OSR2 8 G G T 33 TG 7038 broad.mit.edu 36 8 134103548 134103548 + Missense_Mutation SNP G G A novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 134103548 134103548 TG 8 G G A 37 C8orf73 642475 broad.mit.edu 36 8 144723877 144723877 + Missense_Mutation SNP G G C novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 144723877 144723877 C8orf73 8 G G C 48 CYHR1 50626 broad.mit.edu 36 8 145660554 145660554 + Missense_Mutation SNP C C T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 145660554 145660554 CYHR1 8 C C T 26 SPTLC1 10558 broad.mit.edu 36 9 93861412 93861412 + Splice_Site_SNP SNP C C T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 93861412 93861412 SPTLC1 9 C C T 32 INVS 27130 broad.mit.edu 36 9 102054415 102054415 + Missense_Mutation SNP G G T novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 102054415 102054415 INVS 9 G G T 48 LRRC8A 56262 broad.mit.edu 36 9 130710429 130710429 + Missense_Mutation SNP C C G novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 130710429 130710429 LRRC8A 9 C C G 27 ABL1 25 broad.mit.edu 36 9 132720016 132720016 + Missense_Mutation SNP G G C novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 132720016 132720016 ABL1 9 G G C 34 SEC16A 9919 broad.mit.edu 36 9 138462402 138462402 + Silent SNP T T G novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 138462402 138462402 SEC16A 9 T T G 62 RBBP7 5931 broad.mit.edu 36 X 16780669 16780669 + Missense_Mutation SNP C C A novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 16780669 16780669 RBBP7 23 C C A 19 RAB40AL 282808 broad.mit.edu 36 X 102079466 102079466 + Silent SNP G G A novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 102079466 102079466 RAB40AL 23 G G A 35 LOC100132247 100132247 broad.mit.edu 36 16 22453485 22453496 + In_Frame_Del DEL TCCACCCTCAGC - TCCACCCTCAGC novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 22453485 22453496 LOC100132247 16 TCCACCCTCAGC - TCCACCCTCAGC 62 TP53 7157 broad.mit.edu 36 17 7518907 7518908 + Frame_Shift_Del DEL GC - GC novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 7518907 7518908 TP53 17 GC - GC 42 ZNF415 55786 broad.mit.edu 36 19 58303482 58303494 + Frame_Shift_Del DEL TGATGTCTGAAGA - TGATGTCTGAAGA novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 58303482 58303494 ZNF415 19 TGATGTCTGAAGA - TGATGTCTGAAGA 63 LIAS 11019 broad.mit.edu 36 4 39137146 39137151 + In_Frame_Del DEL GCGGGG - GCGGGG novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad In_Frame_Del DEL 39137146 39137151 LIAS 4 GCGGGG - GCGGGG 46 DRP2 1821 broad.mit.edu 36 X 100377632 100377674 + Splice_Site_Del DEL GTTGGAATGAAATAAAAAAGAAGTCTCACAACCTCCGGTAAGA - GTTGGAATGAAATAAAAAAGAAGTCTCACAACCTCCGGTAAGA novel Unknown TCGA-09-2051-01 TCGA-09-2051-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Splice_Site_Del DEL 100377632 100377674 DRP2 23 GTTGGAATGAAATAAAAAAGAAGTCTCACAACCTCCGGTAAGA - GTTGGAATGAAATAAAAAAGAAGTCTCACAACCTCCGGTAAGA 48