Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context VPS16 64601 genome.wustl.edu 36 20 2795206 2795206 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 2795206 2795206 VPS16 20 G G A 34 MXRA5 25878 genome.wustl.edu 36 X 3251454 3251454 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 3251454 3251454 MXRA5 23 C C T 17 CAMTA2 23125 genome.wustl.edu 36 17 4824431 4824431 + Missense_Mutation SNP G T T novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 4824431 4824431 CAMTA2 17 G T T 42 MUC16 94025 genome.wustl.edu 36 19 8934638 8934638 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 8934638 8934638 MUC16 19 C C T 31 PTCHD2 57540 genome.wustl.edu 36 1 11518272 11518272 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 11518272 11518272 PTCHD2 1 C C T 22 BNC2 54796 genome.wustl.edu 36 9 16427049 16427049 + Silent SNP T T C novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 16427049 16427049 BNC2 9 T T C 59 KLHDC7A 127707 genome.wustl.edu 36 1 18680771 18680771 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 18680771 18680771 KLHDC7A 1 G G A 47 MLLT3 4300 genome.wustl.edu 36 9 20404188 20404188 + Missense_Mutation SNP T T C novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20404188 20404188 MLLT3 9 T T C 64 CD93 22918 genome.wustl.edu 36 20 23013457 23013457 + Nonsense_Mutation SNP C C T novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 23013457 23013457 CD93 20 C C T 21 ENSG00000196593 genome.wustl.edu 36 13 23418186 23418186 + Missense_Mutation SNP G A A novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 G G A A G A Unknown Valid LOH 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 23418186 23418186 ENSG00000196593 13 G A A 41 ZNF512 84450 genome.wustl.edu 36 2 27674544 27674544 + Missense_Mutation SNP G G T novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 27674544 27674544 ZNF512 2 G G T 45 OVCH1 341350 genome.wustl.edu 36 12 29483541 29483541 + Missense_Mutation SNP C C A novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 29483541 29483541 OVCH1 12 C C A 21 C20orf160 140706 genome.wustl.edu 36 20 30074124 30074124 + Missense_Mutation SNP G G T novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 30074124 30074124 C20orf160 20 G G T 41 FAM47C 442444 genome.wustl.edu 36 X 36938205 36938205 + Missense_Mutation SNP A A G novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 36938205 36938205 FAM47C 23 A A G 10 TAF8 129685 genome.wustl.edu 36 6 42133163 42133163 + Silent SNP C C T novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 42133163 42133163 TAF8 6 C C T 22 MAOB 4129 genome.wustl.edu 36 X 43537718 43537718 + Missense_Mutation SNP A A T novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 43537718 43537718 MAOB 23 A A T 3 DYRK1B 9149 genome.wustl.edu 36 19 45013171 45013171 + Silent SNP G G A novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 45013171 45013171 DYRK1B 19 G G A 45 ABCC12 94160 genome.wustl.edu 36 16 46698736 46698736 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 46698736 46698736 ABCC12 16 G G A 40 RB1 5925 genome.wustl.edu 36 13 47937375 47937375 + Nonsense_Mutation SNP C T T novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 47937375 47937375 RB1 13 C T T 31 RHOA 387 genome.wustl.edu 36 3 49380916 49380916 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 49380916 49380916 RHOA 3 C C T 32 CENPQ 55166 genome.wustl.edu 36 6 49547843 49547843 + Missense_Mutation SNP A A G novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 49547843 49547843 CENPQ 6 A A G 9 ATP9A 10079 genome.wustl.edu 36 20 49726099 49726099 + Missense_Mutation SNP A A T novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 49726099 49726099 ATP9A 20 A A T 16 SAE1 10055 genome.wustl.edu 36 19 52364991 52364991 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 52364991 52364991 SAE1 19 G G A 38 NLRP8 126205 genome.wustl.edu 36 19 61157935 61157935 + Silent SNP C C T novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 61157935 61157935 NLRP8 19 C C T 19 PTPRG 5793 genome.wustl.edu 36 3 61709623 61709623 + Silent SNP C C T novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 61709623 61709623 PTPRG 3 C C T 19 TTYH2 94015 genome.wustl.edu 36 17 69760048 69760048 + Silent SNP C T T novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 69760048 69760048 TTYH2 17 C T T 23 ZFC3H1 196441 genome.wustl.edu 36 12 70322513 70322513 + Missense_Mutation SNP T T C novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 70322513 70322513 ZFC3H1 12 T T C 49 SGK269 79834 genome.wustl.edu 36 15 75212886 75212886 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 75212886 75212886 SGK269 15 C C T 20 ENSG00000204562 genome.wustl.edu 36 9 83722308 83722308 + Missense_Mutation SNP C C G novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 83722308 83722308 ENSG00000204562 9 C C G 29 MYBPHL 343263 genome.wustl.edu 36 1 109641076 109641076 + Silent SNP C C T novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 109641076 109641076 MYBPHL 1 C C T 23 FAM40A 85369 genome.wustl.edu 36 1 110390856 110390856 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 110390856 110390856 FAM40A 1 C C T 25 DTX1 1840 genome.wustl.edu 36 12 112019056 112019056 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 112019056 112019056 DTX1 12 G G A 38 UGT8 7368 genome.wustl.edu 36 4 115763968 115763968 + Silent SNP C C T novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 115763968 115763968 UGT8 4 C C T 26 DNM1 1759 genome.wustl.edu 36 9 130052309 130052309 + Missense_Mutation SNP G G A novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 130052309 130052309 DNM1 9 G G A 39 HHIP 64399 genome.wustl.edu 36 4 145852675 145852675 + Splice_Site_SNP SNP T T C novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 145852675 145852675 HHIP 4 T T C 57 PSMB4 5692 genome.wustl.edu 36 1 149639206 149639206 + Missense_Mutation SNP G G T novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 149639206 149639206 PSMB4 1 G G T 37 FLG 2312 genome.wustl.edu 36 1 150542311 150542311 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 150542311 150542311 FLG 1 C C T 23 CENPF 1063 genome.wustl.edu 36 1 212882145 212882145 + Missense_Mutation SNP A A G novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 212882145 212882145 CENPF 1 A A G 2 COL6A3 1293 genome.wustl.edu 36 2 237950203 237950203 + Silent SNP T T C novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 237950203 237950203 COL6A3 2 T T C 59 PGBD2 267002 genome.wustl.edu 36 1 247178593 247178593 + Missense_Mutation SNP G G C novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 247178593 247178593 PGBD2 1 G G C 44 TP53 7157 genome.wustl.edu 36 17 7519257 7519261 + Frame_Shift_Del DEL ATCTT ATCTT - novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 ATCTT ATCTT - - ATCTT - Unknown Valid LOH 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 7519257 7519261 TP53 17 ATCTT ATCTT - 8 LOC729794 genome.wustl.edu 36 10 124479050 124479050 + Silent SNP G G A novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 124479050 124479050 LOC729794 10 G G A 46 CPXM2 119587 genome.wustl.edu 36 10 125496310 125496310 + Missense_Mutation SNP C C T novel Unknown TCGA-10-0933-01 TCGA-10-0933-11 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 125496310 125496310 CPXM2 10 C C T 23 AKD1 0 genome.wustl.edu 36 6 110102103 110102103 + Missense_Mutation SNP G G T Unknown TCGA-10-0933-01 TCGA-10-0933-11 G G G T G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 110102103 110102103 AKD1 6 G G T 37 RCE1 9986 genome.wustl.edu 36 11 66367857 66367858 + Frame_Shift_Del DEL CA CA - Unknown TCGA-10-0933-01 TCGA-10-0933-11 CA CA CA - CA CA Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 66367857 66367858 RCE1 11 CA CA - 21 ZFAND2A 90637 genome.wustl.edu 36 7 1159339 1159339 + Frame_Shift_Del DEL C C - Unknown TCGA-10-0933-01 TCGA-10-0933-11 C C C - C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 1159339 1159339 ZFAND2A 7 C C - 25