Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context SAFB 6294 genome.wustl.edu 36 19 5592841 5592841 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 5592841 5592841 SAFB 19 G G A 40 TP53 7157 genome.wustl.edu 36 17 7518997 7518997 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7518997 7518997 TP53 17 G G A 46 ZNF561 93134 genome.wustl.edu 36 19 9582465 9582465 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 9582465 9582465 ZNF561 19 C C G 32 TLR8 51311 genome.wustl.edu 36 X 12848616 12848616 + Silent SNP G G T novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 12848616 12848616 TLR8 23 G G T 48 ILVBL 10994 genome.wustl.edu 36 19 15094783 15094783 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 15094783 15094783 ILVBL 19 A A T 1 KCNJ12 3768 genome.wustl.edu 36 17 21260314 21260314 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 21260314 21260314 KCNJ12 17 G G A 38 uc001wcu.2 genome.wustl.edu 36 14 21546075 21546075 + Silent SNP C C T novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 21546075 21546075 uc001wcu.2 14 C C T 32 IGF2BP3 10643 genome.wustl.edu 36 7 23357590 23357590 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 23357590 23357590 IGF2BP3 7 C C A 24 ATAD5 79915 genome.wustl.edu 36 17 26243895 26243895 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 26243895 26243895 ATAD5 17 T T G 52 PPM1G 5496 genome.wustl.edu 36 2 27458948 27458948 + Silent SNP G G A novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 27458948 27458948 PPM1G 2 G G A 44 SYT10 341359 genome.wustl.edu 36 12 33470699 33470699 + Splice_Site_SNP SNP T T C novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 33470699 33470699 SYT10 12 T T C 55 PPP2R3C 55012 genome.wustl.edu 36 14 34634084 34634084 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 34634084 34634084 PPP2R3C 14 G G A 45 GOLGA4 2803 genome.wustl.edu 36 3 37342022 37342022 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 37342022 37342022 GOLGA4 3 C C G 27 ZNF248 57209 genome.wustl.edu 36 10 38166609 38166609 + Silent SNP G G A novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 38166609 38166609 ZNF248 10 G G A 37 MAP4K3 8491 genome.wustl.edu 36 2 39339084 39339084 + Silent SNP A A G novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 39339084 39339084 MAP4K3 2 A A G 2 WNT9B 7484 genome.wustl.edu 36 17 42307405 42307405 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 42307405 42307405 WNT9B 17 C C G 28 PPARA 5465 genome.wustl.edu 36 22 44973117 44973117 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 44973117 44973117 PPARA 22 G G C 41 SLC9A7 84679 genome.wustl.edu 36 X 46351437 46351437 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 46351437 46351437 SLC9A7 23 G G A 40 OPN5 221391 genome.wustl.edu 36 6 47871259 47871259 + Splice_Site_SNP SNP G G C novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 47871259 47871259 OPN5 6 G G C 44 CGNL1 84952 genome.wustl.edu 36 15 55518952 55518952 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55518952 55518952 CGNL1 15 G G A 44 R3HDM2 22864 genome.wustl.edu 36 12 55938093 55938093 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55938093 55938093 R3HDM2 12 A A T 11 AASDH 132949 genome.wustl.edu 36 4 56912295 56912295 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 56912295 56912295 AASDH 4 G G T 44 C14orf39 317761 genome.wustl.edu 36 14 59973446 59973446 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 59973446 59973446 C14orf39 14 G G A 48 PEG3 5178 genome.wustl.edu 36 19 62020445 62020445 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 62020445 62020445 PEG3 19 G G A 38 CD36 948 genome.wustl.edu 36 7 80141354 80141354 + Silent SNP T T C novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 80141354 80141354 CD36 7 T T C 56 CHMP4C 92421 genome.wustl.edu 36 8 82827913 82827913 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 82827913 82827913 CHMP4C 8 G G T 47 GPR98 84059 genome.wustl.edu 36 5 90085245 90085245 + Silent SNP C C A novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 90085245 90085245 GPR98 5 C C A 22 PTCD1 26024 genome.wustl.edu 36 7 98870415 98870415 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 98870415 98870415 PTCD1 7 C C A 26 ACAT1 38 genome.wustl.edu 36 11 107511134 107511134 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 107511134 107511134 ACAT1 11 G G T 45 ACAT1 38 genome.wustl.edu 36 11 107511160 107511160 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 107511160 107511160 ACAT1 11 G G A 36 PKHD1L1 93035 genome.wustl.edu 36 8 110522219 110522219 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 110522219 110522219 PKHD1L1 8 G G C 41 PNLIPRP1 5407 genome.wustl.edu 36 10 118345822 118345822 + Missense_Mutation SNP C C A novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 118345822 118345822 PNLIPRP1 10 C C A 17 POLQ 10721 genome.wustl.edu 36 3 122711226 122711226 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 122711226 122711226 POLQ 3 G G C 41 TRPC3 7222 genome.wustl.edu 36 4 123065657 123065657 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 123065657 123065657 TRPC3 4 C C G 19 SPAM1 6677 genome.wustl.edu 36 7 123387190 123387190 + Silent SNP C C T novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 123387190 123387190 SPAM1 7 C C T 21 ROBO4 54538 genome.wustl.edu 36 11 124270756 124270756 + Silent SNP C C A novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 124270756 124270756 ROBO4 11 C C A 23 L3MBTL3 84456 genome.wustl.edu 36 6 130429263 130429263 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 130429263 130429263 L3MBTL3 6 G G A 38 EFR3A 23167 genome.wustl.edu 36 8 133028010 133028010 + Missense_Mutation SNP C C T novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 133028010 133028010 EFR3A 8 C C T 25 GPR126 57211 genome.wustl.edu 36 6 142730653 142730653 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 142730653 142730653 GPR126 6 T T G 52 OR2A12 346525 genome.wustl.edu 36 7 143423923 143423923 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 143423923 143423923 OR2A12 7 A A G 3 GTDC1 79712 genome.wustl.edu 36 2 144481356 144481356 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 144481356 144481356 GTDC1 2 C C G 29 GFM1 85476 genome.wustl.edu 36 3 159853880 159853880 + Silent SNP T T C novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 159853880 159853880 GFM1 3 T T C 64 GABRA6 2559 genome.wustl.edu 36 5 161051638 161051638 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 161051638 161051638 GABRA6 5 G G A 40 DUSP27 92235 genome.wustl.edu 36 1 165362623 165362623 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 165362623 165362623 DUSP27 1 T T A 55 SLC9A11 284525 genome.wustl.edu 36 1 171812446 171812446 + Silent SNP C C T novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 171812446 171812446 SLC9A11 1 C C T 31 DYNC1I2 1781 genome.wustl.edu 36 2 172277531 172277531 + Missense_Mutation SNP A A T novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 172277531 172277531 DYNC1I2 2 A A T 8 TTN 7273 genome.wustl.edu 36 2 179267628 179267628 + Missense_Mutation SNP T T C novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 179267628 179267628 TTN 2 T T C 50 IVNS1ABP 10625 genome.wustl.edu 36 1 183545153 183545153 + Nonsense_Mutation SNP A A T novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 183545153 183545153 IVNS1ABP 1 A A T 6 EHHADH 1962 genome.wustl.edu 36 3 186392720 186392720 + Missense_Mutation SNP G G C novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 186392720 186392720 EHHADH 3 G G C 46 CRB1 23418 genome.wustl.edu 36 1 195592610 195592610 + Missense_Mutation SNP G G A novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 195592610 195592610 CRB1 1 G G A 37 PLXNA2 5362 genome.wustl.edu 36 1 206457025 206457025 + Missense_Mutation SNP T T A novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 206457025 206457025 PLXNA2 1 T T A 56 CENPF 1063 genome.wustl.edu 36 1 212887123 212887123 + Missense_Mutation SNP T T G novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 212887123 212887123 CENPF 1 T T G 50 CCDC108 255101 genome.wustl.edu 36 2 219600667 219600667 + Silent SNP A A C novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 219600667 219600667 CCDC108 2 A A C 11 TRIM67 440730 genome.wustl.edu 36 1 229411375 229411375 + Missense_Mutation SNP A A G novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 229411375 229411375 TRIM67 1 A A G 5 TFB2M 64216 genome.wustl.edu 36 1 244770987 244770987 + Missense_Mutation SNP C C G novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 244770987 244770987 TFB2M 1 C C G 21 OR2T33 391195 genome.wustl.edu 36 1 246502789 246502789 + Missense_Mutation SNP G G T novel Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 246502789 246502789 OR2T33 1 G G T 48 ADAMTS14 140766 genome.wustl.edu 36 10 72173420 72173420 + Missense_Mutation SNP G G A Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G G A G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 72173420 72173420 ADAMTS14 10 G G A 40 OR11H6 122748 genome.wustl.edu 36 14 19761717 19761717 + Missense_Mutation SNP T T G Unknown TCGA-13-0894-01 TCGA-13-0894-10 T T T G T T Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19761717 19761717 OR11H6 14 T T G 61 RASSF2 9770 genome.wustl.edu 36 20 4724554 4724554 + Missense_Mutation SNP G G T Unknown TCGA-13-0894-01 TCGA-13-0894-10 G G G T G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 4724554 4724554 RASSF2 20 G G T 43