Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ABCC5	10057	hgsc.bcm.edu	36	3	185121793	185121793	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	185121793	185121793	ABCC5	3	C	C	G	17
ACBD4	79777	hgsc.bcm.edu	36	17	40569422	40569423	+	Frame_Shift_Del	DEL	CT	CT	-	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	CT	CT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	40569422	40569423	ACBD4	17	CT	CT	-	28
ADAMTS12	81792	hgsc.bcm.edu	36	5	33917038	33917038	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	33917038	33917038	ADAMTS12	5	C	C	T	23
AGAP3	116988	hgsc.bcm.edu	36	7	150468093	150468093	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	150468093	150468093	AGAP3	7	C	C	-	25
AKR1B1	231	hgsc.bcm.edu	36	7	133784390	133784390	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	133784390	133784390	AKR1B1	7	C	C	T	29
ANKRD23	200539	hgsc.bcm.edu	36	2	96871972	96871972	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	96871972	96871972	ANKRD23	2	T	T	C	56
AOC2	314	hgsc.bcm.edu	36	17	38250869	38250871	+	In_Frame_Del	DEL	CTT	CTT	-	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	CTT	CTT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	38250869	38250871	AOC2	17	CTT	CTT	-	24
ARAP1	116985	hgsc.bcm.edu	36	11	72084460	72084460	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	72084460	72084460	ARAP1	11	G	G	-	34
ARHGAP6	395	hgsc.bcm.edu	36	X	11097617	11097617	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	11097617	11097617	ARHGAP6	23	G	G	A	39
ASB11	140456	hgsc.bcm.edu	36	X	15215980	15215980	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	15215980	15215980	ASB11	23	G	G	T	38
ATP11A	23250	hgsc.bcm.edu	36	13	112535303	112535303	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	112535303	112535303	ATP11A	13	G	G	A	38
ATP6V0D1	9114	hgsc.bcm.edu	36	16	66030409	66030409	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	66030409	66030409	ATP6V0D1	16	T	T	C	49
B3GAT1	27087	hgsc.bcm.edu	36	11	133757852	133757852	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	133757852	133757852	B3GAT1	11	G	G	A	35
BAI2	576	hgsc.bcm.edu	36	1	31974901	31974901	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	31974901	31974901	BAI2	1	G	G	T	44
BNIP3	664	hgsc.bcm.edu	36	10	133637379	133637379	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	133637379	133637379	BNIP3	10	C	C	T	23
ENO4	387712	hgsc.bcm.edu	36	10	118606007	118606007	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	118606007	118606007	ENO4	10	G	G	T	47
C12orf51	283450	hgsc.bcm.edu	36	12	111130724	111130724	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	111130724	111130724	C12orf51	12	G	G	A	46
C1QL4	338761	hgsc.bcm.edu	36	12	48013235	48013236	+	Frame_Shift_Ins	INS	-	-	TT	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	48013235	48013236	C1QL4	12	-	-	TT	27
C20orf186	149954	hgsc.bcm.edu	36	20	31134874	31134875	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	31134874	31134875	C20orf186	20	-	-	C	10
C2CD2	25966	hgsc.bcm.edu	36	21	42200301	42200301	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	42200301	42200301	C2CD2	21	G	G	-	35
C9orf171	389799	hgsc.bcm.edu	36	9	134402855	134402855	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	134402855	134402855	C9orf171	9	C	C	-	28
CACNA2D2	9254	hgsc.bcm.edu	36	3	50391996	50391996	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	50391996	50391996	CACNA2D2	3	G	G	-	34
CAPG	822	hgsc.bcm.edu	36	2	85482496	85482496	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	85482496	85482496	CAPG	2	C	C	A	26
CCDC142	84865	hgsc.bcm.edu	36	2	74561977	74561977	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	74561977	74561977	CCDC142	2	C	C	T	22
CCNJL	79616	hgsc.bcm.edu	36	5	159615259	159615259	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	159615259	159615259	CCNJL	5	G	G	A	37
CEACAM6	4680	hgsc.bcm.edu	36	19	46952499	46952499	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	46952499	46952499	CEACAM6	19	A	A	G	11
CKAP4	10970	hgsc.bcm.edu	36	12	105157974	105157974	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	105157974	105157974	CKAP4	12	G	G	C	48
CLCN4	1183	hgsc.bcm.edu	36	X	10113170	10113170	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	10113170	10113170	CLCN4	23	T	T	A	50
CPAMD8	27151	hgsc.bcm.edu	36	19	16900883	16900884	+	Frame_Shift_Ins	INS	-	-	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	16900883	16900884	CPAMD8	19	-	-	C	46
CSTB	1476	hgsc.bcm.edu	36	21	44019020	44019020	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	44019020	44019020	CSTB	21	T	T	C	61
DAG1	1605	hgsc.bcm.edu	36	3	49544506	49544506	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	49544506	49544506	DAG1	3	T	T	C	58
DGCR2	9993	hgsc.bcm.edu	36	22	17456948	17456948	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	17456948	17456948	DGCR2	22	G	G	A	41
DLGAP3	58512	hgsc.bcm.edu	36	1	35142860	35142860	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	35142860	35142860	DLGAP3	1	G	G	A	46
DNAI2	64446	hgsc.bcm.edu	36	17	69789693	69789693	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	69789693	69789693	DNAI2	17	G	G	C	41
DNAJC11	55735	hgsc.bcm.edu	36	1	6620969	6620973	+	Frame_Shift_Del	DEL	CAGCA	CAGCA	-	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	CAGCA	CAGCA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	6620969	6620973	DNAJC11	1	CAGCA	CAGCA	-	25
EFEMP1	2202	hgsc.bcm.edu	36	2	55962258	55962258	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	55962258	55962258	EFEMP1	2	C	C	A	20
EGFR	1956	hgsc.bcm.edu	36	7	55191950	55191950	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	55191950	55191950	EGFR	7	T	T	-	54
EPHA7	2045	hgsc.bcm.edu	36	6	94024620	94024620	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	94024620	94024620	EPHA7	6	C	C	A	30
ERCC2	2068	hgsc.bcm.edu	36	19	50550798	50550798	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	50550798	50550798	ERCC2	19	G	G	C	42
ERICH1	157697	hgsc.bcm.edu	36	8	632491	632491	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	632491	632491	ERICH1	8	C	C	T	22
EVC2	132884	hgsc.bcm.edu	36	4	5675310	5675310	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	5675310	5675310	EVC2	4	C	C	A	25
EVC2	132884	hgsc.bcm.edu	36	4	5675312	5675312	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	5675312	5675312	EVC2	4	G	G	A	34
F11R	50848	hgsc.bcm.edu	36	1	159237075	159237075	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	159237075	159237075	F11R	1	C	C	A	21
FAM65A	79567	hgsc.bcm.edu	36	16	66130449	66130449	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	66130449	66130449	FAM65A	16	G	G	A	41
FBF1	85302	hgsc.bcm.edu	36	17	71434554	71434554	+	Splice_Site_SNP	SNP	C	C	G	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	71434554	71434554	FBF1	17	C	C	G	32
FBXO6	26270	hgsc.bcm.edu	36	1	11655959	11655959	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	11655959	11655959	FBXO6	1	T	T	A	54
ARHGEF38	54848	hgsc.bcm.edu	36	4	106729858	106729858	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	106729858	106729858	ARHGEF38	4	G	G	C	33
FLRT2	23768	hgsc.bcm.edu	36	14	85158400	85158400	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	85158400	85158400	FLRT2	14	G	G	A	33
FRMD4A	55691	hgsc.bcm.edu	36	10	13741413	13741414	+	Frame_Shift_Del	DEL	CC	CC	-	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	CC	CC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	13741413	13741414	FRMD4A	10	CC	CC	-	26
FXYD3	5349	hgsc.bcm.edu	36	19	40303837	40303837	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	40303837	40303837	FXYD3	19	A	A	G	10
GNL3	26354	hgsc.bcm.edu	36	3	52695824	52695824	+	Splice_Site_SNP	SNP	G	G	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	52695824	52695824	GNL3	3	G	G	C	33
GPATCH8	23131	hgsc.bcm.edu	36	17	39834010	39834010	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	39834010	39834010	GPATCH8	17	C	C	T	30
GPC6	10082	hgsc.bcm.edu	36	13	92677741	92677741	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	92677741	92677741	GPC6	13	C	C	T	30
GSG2	83903	hgsc.bcm.edu	36	17	3574813	3574814	+	Frame_Shift_Ins	INS	-	-	TG	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	3574813	3574814	GSG2	17	-	-	TG	1
HDAC6	10013	hgsc.bcm.edu	36	X	48558384	48558384	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	48558384	48558384	HDAC6	23	G	G	A	34
HDLBP	3069	hgsc.bcm.edu	36	2	241836359	241836359	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	241836359	241836359	HDLBP	2	G	G	T	41
HSPA12B	116835	hgsc.bcm.edu	36	20	3669464	3669464	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	3669464	3669464	HSPA12B	20	T	T	A	54
HSPG2	3339	hgsc.bcm.edu	36	1	22035992	22035992	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	22035992	22035992	HSPG2	1	G	G	A	47
IFRD2	7866	hgsc.bcm.edu	36	3	50302845	50302845	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	50302845	50302845	IFRD2	3	C	C	G	17
IGHMBP2	3508	hgsc.bcm.edu	36	11	68432668	68432668	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	68432668	68432668	IGHMBP2	11	T	T	C	59
ITIH4	3700	hgsc.bcm.edu	36	3	52828479	52828479	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	52828479	52828479	ITIH4	3	C	C	T	25
JAKMIP3	282973	hgsc.bcm.edu	36	10	133799528	133799529	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	133799528	133799529	JAKMIP3	10	-	-	T	47
KIAA0226	9711	hgsc.bcm.edu	36	3	198893168	198893168	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	198893168	198893168	KIAA0226	3	C	C	T	24
KRT26	353288	hgsc.bcm.edu	36	17	36180133	36180133	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	36180133	36180133	KRT26	17	A	A	G	9
LARP4	113251	hgsc.bcm.edu	36	12	49155763	49155763	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	49155763	49155763	LARP4	12	A	A	G	12
LILRB3	11025	hgsc.bcm.edu	36	19	59414824	59414827	+	Frame_Shift_Del	DEL	TTGC	TTGC	-	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	TTGC	TTGC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	59414824	59414827	LILRB3	19	TTGC	TTGC	-	64
LRP1	4035	hgsc.bcm.edu	36	12	55864460	55864460	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	55864460	55864460	LRP1	12	C	C	G	19
LST1	7940	hgsc.bcm.edu	36	6	31663074	31663074	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	31663074	31663074	LST1	6	G	G	C	47
MAGEB17	645864	hgsc.bcm.edu	36	X	16099315	16099315	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	16099315	16099315	MAGEB17	23	G	G	A	40
MAGI2	9863	hgsc.bcm.edu	36	7	77602335	77602335	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	77602335	77602335	MAGI2	7	G	G	C	48
MAP1A	4130	hgsc.bcm.edu	36	15	41608939	41608939	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	41608939	41608939	MAP1A	15	A	A	C	9
MAST1	22983	hgsc.bcm.edu	36	19	12823779	12823779	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	12823779	12823779	MAST1	19	C	C	A	26
MED4	29079	hgsc.bcm.edu	36	13	47562502	47562502	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	47562502	47562502	MED4	13	C	C	G	30
METTL11A	28989	hgsc.bcm.edu	36	9	131434886	131434886	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	131434886	131434886	METTL11A	9	A	A	-	10
METTL12	751071	hgsc.bcm.edu	36	11	62190680	62190680	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	62190680	62190680	METTL12	11	G	G	A	41
MKL1	57591	hgsc.bcm.edu	36	22	39155710	39155710	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	39155710	39155710	MKL1	22	C	C	T	23
MMP28	79148	hgsc.bcm.edu	36	17	31119441	31119442	+	Frame_Shift_Ins	INS	-	-	GC	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	31119441	31119442	MMP28	17	-	-	GC	36
MUM1	84939	hgsc.bcm.edu	36	19	1317312	1317312	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	1317312	1317312	MUM1	19	C	C	G	27
MYBPC3	4607	hgsc.bcm.edu	36	11	47315686	47315686	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	47315686	47315686	MYBPC3	11	T	T	G	62
MYL1	4632	hgsc.bcm.edu	36	2	210867218	210867218	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	210867218	210867218	MYL1	2	G	G	T	43
MYO18B	84700	hgsc.bcm.edu	36	22	24494303	24494303	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	24494303	24494303	MYO18B	22	G	G	C	33
NAV3	89795	hgsc.bcm.edu	36	12	77037330	77037330	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	77037330	77037330	NAV3	12	T	T	C	58
NBAS	51594	hgsc.bcm.edu	36	2	15530893	15530893	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	15530893	15530893	NBAS	2	C	C	G	17
NKTR	4820	hgsc.bcm.edu	36	3	42655651	42655651	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	42655651	42655651	NKTR	3	G	G	A	46
NOM1	64434	hgsc.bcm.edu	36	7	156451859	156451859	+	Splice_Site_SNP	SNP	T	T	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	156451859	156451859	NOM1	7	T	T	A	57
NOTCH2	4853	hgsc.bcm.edu	36	1	120259512	120259512	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	120259512	120259512	NOTCH2	1	C	C	T	28
OSBPL2	9885	hgsc.bcm.edu	36	20	60289573	60289573	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	60289573	60289573	OSBPL2	20	C	C	T	28
PALM2-AKAP2	445815	hgsc.bcm.edu	36	9	111939566	111939566	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	111939566	111939566	PALM2-AKAP2	9	G	G	A	34
PCDHB15	56121	hgsc.bcm.edu	36	5	140605479	140605481	+	In_Frame_Del	DEL	ATG	ATG	-	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	ATG	ATG	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	140605479	140605481	PCDHB15	5	ATG	ATG	-	4
PCNXL3	399909	hgsc.bcm.edu	36	11	65148536	65148536	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	65148536	65148536	PCNXL3	11	C	C	A	22
PDSS2	57107	hgsc.bcm.edu	36	6	107702052	107702052	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	107702052	107702052	PDSS2	6	T	T	C	61
PDZD2	23037	hgsc.bcm.edu	36	5	32125880	32125880	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	32125880	32125880	PDZD2	5	T	T	-	55
PELI1	57162	hgsc.bcm.edu	36	2	64175555	64175555	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	64175555	64175555	PELI1	2	C	C	A	21
PER2	8864	hgsc.bcm.edu	36	2	238831994	238831994	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	238831994	238831994	PER2	2	T	T	C	64
PFAS	5198	hgsc.bcm.edu	36	17	8111088	8111090	+	In_Frame_Del	DEL	CGG	CGG	-	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	CGG	CGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	8111088	8111090	PFAS	17	CGG	CGG	-	19
PHKA2	5256	hgsc.bcm.edu	36	X	18825295	18825296	+	Frame_Shift_Del	DEL	CC	CC	-	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	CC	CC	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	18825295	18825296	PHKA2	23	CC	CC	-	26
PLCE1	51196	hgsc.bcm.edu	36	10	96048337	96048337	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	96048337	96048337	PLCE1	10	C	C	T	25
PRR16	51334	hgsc.bcm.edu	36	5	120049708	120049708	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	120049708	120049708	PRR16	5	C	C	A	21
PTK2B	2185	hgsc.bcm.edu	36	8	27349753	27349753	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	27349753	27349753	PTK2B	8	G	G	C	41
PTPRG	5793	hgsc.bcm.edu	36	3	62117807	62117807	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	62117807	62117807	PTPRG	3	G	G	T	40
QSER1	79832	hgsc.bcm.edu	36	11	32936071	32936071	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	32936071	32936071	QSER1	11	C	C	A	30
RASA3	22821	hgsc.bcm.edu	36	13	113835644	113835644	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	113835644	113835644	RASA3	13	T	T	A	54
ROBO1	6091	hgsc.bcm.edu	36	3	79070741	79070741	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	79070741	79070741	ROBO1	3	G	G	A	41
RPGRIP1	57096	hgsc.bcm.edu	36	14	20863063	20863063	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	20863063	20863063	RPGRIP1	14	C	C	T	20
SALL4	57167	hgsc.bcm.edu	36	20	49841710	49841710	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	49841710	49841710	SALL4	20	T	T	-	60
SCN4A	6329	hgsc.bcm.edu	36	17	59376564	59376564	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	59376564	59376564	SCN4A	17	A	A	T	10
SERINC4	619189	hgsc.bcm.edu	36	15	41874559	41874559	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	41874559	41874559	SERINC4	15	G	G	A	43
SF3A3	10946	hgsc.bcm.edu	36	1	38217050	38217050	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	38217050	38217050	SF3A3	1	G	G	A	47
SIGLEC9	27180	hgsc.bcm.edu	36	19	56323492	56323493	+	Frame_Shift_Ins	INS	-	-	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	56323492	56323493	SIGLEC9	19	-	-	T	24
SIM1	6492	hgsc.bcm.edu	36	6	100945446	100945446	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	100945446	100945446	SIM1	6	A	A	T	6
SLC34A2	10568	hgsc.bcm.edu	36	4	25286943	25286943	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	25286943	25286943	SLC34A2	4	A	A	C	3
SLC35E1	79939	hgsc.bcm.edu	36	19	16543365	16543365	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	16543365	16543365	SLC35E1	19	G	G	A	41
SOAT2	8435	hgsc.bcm.edu	36	12	51785258	51785258	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	51785258	51785258	SOAT2	12	A	A	C	1
SPC24	147841	hgsc.bcm.edu	36	19	11120880	11120880	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	11120880	11120880	SPC24	19	G	G	A	42
SPG7	6687	hgsc.bcm.edu	36	16	88140595	88140596	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	88140595	88140596	SPG7	16	-	-	G	55
SPTB	6710	hgsc.bcm.edu	36	14	64331923	64331925	+	In_Frame_Del	DEL	CAT	CAT	-	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	CAT	CAT	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	64331923	64331925	SPTB	14	CAT	CAT	-	21
SPTBN2	6712	hgsc.bcm.edu	36	11	66214144	66214144	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	66214144	66214144	SPTBN2	11	C	C	A	30
SYT5	6861	hgsc.bcm.edu	36	19	60379267	60379267	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	60379267	60379267	SYT5	19	G	G	T	41
SYT5	6861	hgsc.bcm.edu	36	19	60379269	60379270	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	60379269	60379270	SYT5	19	-	-	A	51
TAF12	6883	hgsc.bcm.edu	36	1	28804553	28804553	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	28804553	28804553	TAF12	1	T	T	C	55
TCF20	6942	hgsc.bcm.edu	36	22	40938254	40938254	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	40938254	40938254	TCF20	22	A	A	C	8
TECPR2	9895	hgsc.bcm.edu	36	14	101970790	101970790	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	101970790	101970790	TECPR2	14	A	A	T	9
TFDP1	7027	hgsc.bcm.edu	36	13	113340204	113340204	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	113340204	113340204	TFDP1	13	C	C	T	32
TMEM120B	144404	hgsc.bcm.edu	36	12	120697965	120697965	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	120697965	120697965	TMEM120B	12	T	T	G	59
TNN	63923	hgsc.bcm.edu	36	1	173334203	173334203	+	Silent	SNP	T	T	C	rs61747978	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	173334203	173334203	TNN	1	T	T	C	55
TRIM59	286827	hgsc.bcm.edu	36	3	161639062	161639062	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	161639062	161639062	TRIM59	3	T	T	-	56
TRPM3	80036	hgsc.bcm.edu	36	9	72667830	72667830	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	72667830	72667830	TRPM3	9	C	C	-	29
TTN	7273	hgsc.bcm.edu	36	2	179134636	179134636	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	179134636	179134636	TTN	2	G	G	T	41
UBA1	7317	hgsc.bcm.edu	36	X	46945276	46945276	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	46945276	46945276	UBA1	23	C	C	-	27
USP6	9098	hgsc.bcm.edu	36	17	4977965	4977965	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	4977965	4977965	USP6	17	G	G	A	45
VMO1	284013	hgsc.bcm.edu	36	17	4635603	4635603	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	4635603	4635603	VMO1	17	C	C	T	29
VPS13B	157680	hgsc.bcm.edu	36	8	100935629	100935629	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	100935629	100935629	VPS13B	8	G	G	T	46
WDR33	55339	hgsc.bcm.edu	36	2	128180449	128180450	+	Frame_Shift_Ins	INS	-	-	CACTTCT	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	128180449	128180450	WDR33	2	-	-	CACTTCT	26
WDR59	79726	hgsc.bcm.edu	36	16	73501017	73501017	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	73501017	73501017	WDR59	16	G	G	A	43
WISP2	8839	hgsc.bcm.edu	36	20	42777460	42777460	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	42777460	42777460	WISP2	20	G	G	C	37
WSCD1	23302	hgsc.bcm.edu	36	17	5934489	5934491	+	In_Frame_Del	DEL	GGG	GGG	-	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	GGG	GGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	5934489	5934491	WSCD1	17	GGG	GGG	-	39
ZMIZ2	83637	hgsc.bcm.edu	36	7	44766684	44766684	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	44766684	44766684	ZMIZ2	7	C	C	G	26
ZMIZ2	83637	hgsc.bcm.edu	36	7	44770599	44770599	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	44770599	44770599	ZMIZ2	7	T	T	A	58
ZNF281	23528	hgsc.bcm.edu	36	1	198644306	198644306	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	198644306	198644306	ZNF281	1	T	T	C	60
ZNF500	26048	hgsc.bcm.edu	36	16	4742737	4742737	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	4742737	4742737	ZNF500	16	A	A	C	3
ZNF689	115509	hgsc.bcm.edu	36	16	30524083	30524083	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	30524083	30524083	ZNF689	16	C	C	A	25
ZNRF4	148066	hgsc.bcm.edu	36	19	5407269	5407269	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1408-01	TCGA-13-1408-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	5407269	5407269	ZNRF4	19	G	G	C	47