Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context MYT1L 23040 genome.wustl.edu 36 2 1900017 1900017 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 1900017 1900017 MYT1L 2 C C G 23 ZNF500 26048 genome.wustl.edu 36 16 4752611 4752611 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 4752611 4752611 ZNF500 16 T T A 55 OR52E4 390081 genome.wustl.edu 36 11 5862102 5862102 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 5862102 5862102 OR52E4 11 C C T 26 NLRP14 338323 genome.wustl.edu 36 11 7020928 7020928 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7020928 7020928 NLRP14 11 G G A 48 TP53 7157 genome.wustl.edu 36 17 7517747 7517747 + Nonsense_Mutation SNP G G A novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 7517747 7517747 TP53 17 G G A 38 GRIN2A 2903 genome.wustl.edu 36 16 9765286 9765286 + Nonsense_Mutation SNP G G A novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 9765286 9765286 GRIN2A 16 G G A 38 GRIN2A 2903 genome.wustl.edu 36 16 9799636 9799636 + Silent SNP A A G novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 9799636 9799636 GRIN2A 16 A A G 8 KIF1B 23095 genome.wustl.edu 36 1 10347892 10347892 + Splice_Site_SNP SNP T T C novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 10347892 10347892 KIF1B 1 T T C 57 ECSIT 51295 genome.wustl.edu 36 19 11479353 11479353 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 11479353 11479353 ECSIT 19 A A G 6 SPEN 23013 genome.wustl.edu 36 1 16129028 16129028 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 16129028 16129028 SPEN 1 G G C 45 DBX1 120237 genome.wustl.edu 36 11 20138083 20138083 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20138083 20138083 DBX1 11 T T C 60 CYFIP1 23191 genome.wustl.edu 36 15 20481213 20481213 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20481213 20481213 CYFIP1 15 G G A 35 METTL9 51108 genome.wustl.edu 36 16 21536719 21536719 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 21536719 21536719 METTL9 16 C C T 29 CDH12 1010 genome.wustl.edu 36 5 21788078 21788078 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 A A A T A A Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 21788078 21788078 CDH12 5 A A T 7 LOC100130518 genome.wustl.edu 36 19 22291166 22291166 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 22291166 22291166 LOC100130518 19 T T C 51 TNRC6A 27327 genome.wustl.edu 36 16 24708914 24708914 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 24708914 24708914 TNRC6A 16 C C T 27 NF1 4763 genome.wustl.edu 36 17 26521136 26521136 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 26521136 26521136 NF1 17 T T C 55 ARMC4 55130 genome.wustl.edu 36 10 28268882 28268882 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 28268882 28268882 ARMC4 10 T T A 64 FAM47C 442444 genome.wustl.edu 36 X 36937298 36937298 + Silent SNP T T C novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 36937298 36937298 FAM47C 23 T T C 54 LGALS14 56891 genome.wustl.edu 36 19 44891741 44891741 + Missense_Mutation SNP T C C novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 T T C C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 44891741 44891741 LGALS14 19 T C C 51 C12orf41 54934 genome.wustl.edu 36 12 47351980 47351980 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 47351980 47351980 C12orf41 12 G G A 42 CIC 23152 genome.wustl.edu 36 19 47486971 47486971 + Silent SNP C C A novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 47486971 47486971 CIC 19 C C A 21 GPR115 221393 genome.wustl.edu 36 6 47790130 47790130 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 47790130 47790130 GPR115 6 C C T 18 P4HTM 54681 genome.wustl.edu 36 3 49017495 49017495 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 49017495 49017495 P4HTM 3 C C A 22 SERPINE3 genome.wustl.edu 36 13 50819248 50819248 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 T T T A T T Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 50819248 50819248 SERPINE3 13 T T A 58 ANKFN1 162282 genome.wustl.edu 36 17 51913086 51913086 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 51913086 51913086 ANKFN1 17 C C A 29 KDR 3791 genome.wustl.edu 36 4 55665901 55665901 + Silent SNP A A T novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 55665901 55665901 KDR 4 A A T 7 CTNND1 1500 genome.wustl.edu 36 11 57329980 57329980 + Silent SNP C C T novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 57329980 57329980 CTNND1 11 C C T 18 ATG4C 84938 genome.wustl.edu 36 1 63102353 63102353 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 63102353 63102353 ATG4C 1 C C A 24 LRIG1 26018 genome.wustl.edu 36 3 66519144 66519144 + Silent SNP G G A novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 66519144 66519144 LRIG1 3 G G A 47 CTNNA3 29119 genome.wustl.edu 36 10 68610279 68610279 + Silent SNP T T C novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 68610279 68610279 CTNNA3 10 T T C 61 ZNF638 27332 genome.wustl.edu 36 2 71430641 71430641 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 71430641 71430641 ZNF638 2 G G A 39 KIAA2022 340533 genome.wustl.edu 36 X 73880405 73880405 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 73880405 73880405 KIAA2022 23 C C A 26 MYCBP2 23077 genome.wustl.edu 36 13 76536761 76536761 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 76536761 76536761 MYCBP2 13 G G C 46 PRUNE2 158471 genome.wustl.edu 36 9 78512437 78512437 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 78512437 78512437 PRUNE2 9 C C G 28 ELTD1 64123 genome.wustl.edu 36 1 79156241 79156241 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 79156241 79156241 ELTD1 1 A A G 11 NTRK3 4916 genome.wustl.edu 36 15 86323601 86323601 + Silent SNP G G A novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 86323601 86323601 NTRK3 15 G G A 46 HSP90AB3P genome.wustl.edu 36 4 89033947 89033947 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 89033947 89033947 HSP90AB3P 4 C C A 26 PRKRIP1 79706 genome.wustl.edu 36 7 101827053 101827053 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 101827053 101827053 PRKRIP1 7 C C T 23 ZNF462 58499 genome.wustl.edu 36 9 108729542 108729542 + Silent SNP G G A novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 108729542 108729542 ZNF462 9 G G A 45 IL1F6 27179 genome.wustl.edu 36 2 113481917 113481917 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 113481917 113481917 IL1F6 2 C C T 24 PVRL1 5818 genome.wustl.edu 36 11 119050543 119050543 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 119050543 119050543 PVRL1 11 C C T 26 LOC389787 0 genome.wustl.edu 36 9 119884996 119884996 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 119884996 119884996 LOC389787 9 G G T 33 PLA1A 51365 genome.wustl.edu 36 3 120826675 120826675 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 120826675 120826675 PLA1A 3 G G T 40 FBN2 2201 genome.wustl.edu 36 5 127882885 127882885 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 127882885 127882885 FBN2 5 G G T 36 DARS 1615 genome.wustl.edu 36 2 136457479 136457479 + Silent SNP T T G novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 136457479 136457479 DARS 2 T T G 54 USP38 84640 genome.wustl.edu 36 4 144355152 144355152 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 144355152 144355152 USP38 4 A A G 14 LATS1 9113 genome.wustl.edu 36 6 150046401 150046401 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 150046401 150046401 LATS1 6 G G C 47 PCMT1 5110 genome.wustl.edu 36 6 150134043 150134043 + Silent SNP C C T novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 150134043 150134043 PCMT1 6 C C T 18 IYD 389434 genome.wustl.edu 36 6 150752225 150752225 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 150752225 150752225 IYD 6 C C A 22 CCT8L1 155100 genome.wustl.edu 36 7 151774449 151774449 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 151774449 151774449 CCT8L1 7 T T A 58 ITLN2 142683 genome.wustl.edu 36 1 159187017 159187017 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 159187017 159187017 ITLN2 1 T T C 63 PVRL4 81607 genome.wustl.edu 36 1 159309176 159309176 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 159309176 159309176 PVRL4 1 T T C 51 RANBP17 64901 genome.wustl.edu 36 5 170273772 170273772 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 170273772 170273772 RANBP17 5 G G C 41 IARS2 55699 genome.wustl.edu 36 1 218378008 218378008 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 218378008 218378008 IARS2 1 G G C 35 PPP1R12B 4660 genome.wustl.edu 36 1 200673582 200673582 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 G G G T G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx WashU Missense_Mutation SNP 200673582 200673582 PPP1R12B 1 G G T 42 PTCH1 5727 genome.wustl.edu 36 9 97318809 97318809 + Missense_Mutation SNP C G C novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 C C G C C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx WashU Missense_Mutation SNP 97318809 97318809 PTCH1 9 C G C 32 SYT3 84258 genome.wustl.edu 36 19 55827452 55827452 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55827452 55827452 SYT3 19 C C T 22 PDGFRA 5156 genome.wustl.edu 36 4 54822144 54822144 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1483-01 TCGA-13-1483-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 54822144 54822144 PDGFRA 4 T T A 57 ZBBX 79740 genome.wustl.edu 36 3 168498928 168498934 + Frame_Shift_Del DEL TTTCTTG TTTCTTG - Unknown TCGA-13-1483-01 TCGA-13-1483-10 TTTCTTG TTTCTTG TTTCTTG - TTTCTTG TTTCTTG Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 168498928 168498934 ZBBX 3 TTTCTTG TTTCTTG - 52 WNT16 51384 genome.wustl.edu 36 7 120766354 120766354 + Frame_Shift_Del DEL G G - Unknown TCGA-13-1483-01 TCGA-13-1483-10 G G G - G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 120766354 120766354 WNT16 7 G G - 33