Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context WNK1 65125 genome.wustl.edu 36 12 859035 859035 + Silent SNP C C A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 859035 859035 WNK1 12 C C A 27 ZSCAN10 84891 genome.wustl.edu 36 16 3082123 3082123 + Missense_Mutation SNP T C C novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 3082123 3082123 ZSCAN10 16 T C C 54 PELP1 27043 genome.wustl.edu 36 17 4524656 4524656 + Missense_Mutation SNP G T T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 4524656 4524656 PELP1 17 G T T 43 OR52L2P genome.wustl.edu 36 11 6035139 6035139 + Nonsense_Mutation SNP G G A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 6035139 6035139 OR52L2P 11 G G A 47 PMS2CL 441194 genome.wustl.edu 36 7 6743617 6743617 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 6743617 6743617 PMS2CL 7 C C A 17 INSR 3643 genome.wustl.edu 36 19 7068339 7068339 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7068339 7068339 INSR 19 C C A 31 OLFML1 283298 genome.wustl.edu 36 11 7466209 7466209 + Silent SNP T T A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 7466209 7466209 OLFML1 11 T T A 54 TP53 7157 genome.wustl.edu 36 17 7514759 7514759 + Splice_Site_SNP SNP C C T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 7514759 7514759 TP53 17 C C T 32 PAK7 57144 genome.wustl.edu 36 20 9509002 9509002 + Silent SNP G G A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 9509002 9509002 PAK7 20 G G A 42 MYH3 4621 genome.wustl.edu 36 17 10486588 10486588 + Missense_Mutation SNP C T T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C T T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 10486588 10486588 MYH3 17 C T T 19 MSR1 4481 genome.wustl.edu 36 8 16012099 16012099 + Splice_Site_SNP SNP C T T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 16012099 16012099 MSR1 8 C T T 24 TAS1R2 80834 genome.wustl.edu 36 1 19039080 19039080 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19039080 19039080 TAS1R2 1 C C T 19 NCAN 1463 genome.wustl.edu 36 19 19210115 19210115 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19210115 19210115 NCAN 19 T T A 53 NBL1 4681 genome.wustl.edu 36 1 19854446 19854446 + Silent SNP C C T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 19854446 19854446 NBL1 1 C C T 24 CDH18 1016 genome.wustl.edu 36 5 19874754 19874754 + Silent SNP C C T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 19874754 19874754 CDH18 5 C C T 29 RPL15 6138 genome.wustl.edu 36 3 23935904 23935904 + Nonsense_Mutation SNP G G T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 23935904 23935904 RPL15 3 G G T 47 FAM123A 219287 genome.wustl.edu 36 13 24641799 24641799 + Silent SNP G G T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 24641799 24641799 FAM123A 13 G G T 34 ITPR2 3709 genome.wustl.edu 36 12 26455589 26455589 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 26455589 26455589 ITPR2 12 T T A 58 RPA2 6118 genome.wustl.edu 36 1 28113723 28113723 + Splice_Site_SNP SNP A A C novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 28113723 28113723 RPA2 1 A A C 6 DEFB118 117285 genome.wustl.edu 36 20 29424617 29424617 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 29424617 29424617 DEFB118 20 G G A 48 NOL4 8715 genome.wustl.edu 36 18 29939023 29939023 + Missense_Mutation SNP T G G novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 T T G G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 29939023 29939023 NOL4 18 T G G 60 PPP1R11 6992 genome.wustl.edu 36 6 30144886 30144886 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 30144886 30144886 PPP1R11 6 G G T 42 BAT2 7916 genome.wustl.edu 36 6 31700227 31700227 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 31700227 31700227 BAT2 6 G G A 39 VARS 7407 genome.wustl.edu 36 6 31854754 31854754 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 31854754 31854754 VARS 6 G G A 39 APTX 54840 genome.wustl.edu 36 9 32979805 32979805 + Missense_Mutation SNP G A A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 32979805 32979805 APTX 9 G A A 38 BRD2 6046 genome.wustl.edu 36 6 33053885 33053885 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 33053885 33053885 BRD2 6 G G C 39 FUT10 84750 genome.wustl.edu 36 8 33366290 33366290 + Silent SNP A A C novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 33366290 33366290 FUT10 8 A A C 9 NFS1 9054 genome.wustl.edu 36 20 33732160 33732160 + Nonsense_Mutation SNP G G A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 33732160 33732160 NFS1 20 G G A 47 DCLK1 9201 genome.wustl.edu 36 13 35282981 35282981 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 35282981 35282981 DCLK1 13 G G A 46 IL2RB 3560 genome.wustl.edu 36 22 35854460 35854460 + Missense_Mutation SNP G T T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 35854460 35854460 IL2RB 22 G T T 44 HAP1 9001 genome.wustl.edu 36 17 37134774 37134774 + Missense_Mutation SNP G C C novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 37134774 37134774 HAP1 17 G C C 34 KIF21A 55605 genome.wustl.edu 36 12 37989745 37989745 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 37989745 37989745 KIF21A 12 C C T 17 STAR 6770 genome.wustl.edu 36 8 38125411 38125411 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 38125411 38125411 STAR 8 A A T 6 AMPH 273 genome.wustl.edu 36 7 38395993 38395993 + Silent SNP A A G novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 38395993 38395993 AMPH 7 A A G 8 LRRC4C 57689 genome.wustl.edu 36 11 40092829 40092829 + Silent SNP A A T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 40092829 40092829 LRRC4C 11 A A T 5 TOB2 10766 genome.wustl.edu 36 22 40162846 40162846 + Silent SNP C C G novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 40162846 40162846 TOB2 22 C C G 17 NPHS1 4868 genome.wustl.edu 36 19 41025292 41025292 + Nonsense_Mutation SNP C C A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 41025292 41025292 NPHS1 19 C C A 22 MAP1A 4130 genome.wustl.edu 36 15 41607649 41607649 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 41607649 41607649 MAP1A 15 C C T 29 HAAO 23498 genome.wustl.edu 36 2 42848133 42848133 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 42848133 42848133 HAAO 2 G G A 33 HNRNPL 3191 genome.wustl.edu 36 19 44029855 44029855 + Silent SNP C C A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 44029855 44029855 HNRNPL 19 C C A 29 SRSF2IP 9169 genome.wustl.edu 36 12 44607946 44607946 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 44607946 44607946 SRSF2IP 12 G G C 48 PTCH2 8643 genome.wustl.edu 36 1 45070287 45070287 + Nonsense_Mutation SNP T T A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 45070287 45070287 PTCH2 1 T T A 63 ITGB2 3689 genome.wustl.edu 36 21 45151408 45151408 + Missense_Mutation SNP T T G novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 T T T G T T Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 45151408 45151408 ITGB2 21 T T G 51 MAST2 23139 genome.wustl.edu 36 1 46264028 46264028 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 46264028 46264028 MAST2 1 T T A 57 FBN1 2200 genome.wustl.edu 36 15 46500294 46500294 + Silent SNP G A A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G A A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 46500294 46500294 FBN1 15 G A A 40 CEACAM7 1087 genome.wustl.edu 36 19 46882638 46882638 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 46882638 46882638 CEACAM7 19 T T C 57 USP11 8237 genome.wustl.edu 36 X 46986479 46986479 + Missense_Mutation SNP G A A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 46986479 46986479 USP11 23 G A A 40 STAU1 6780 genome.wustl.edu 36 20 47173074 47173074 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 47173074 47173074 STAU1 20 C C G 32 GRIK5 2901 genome.wustl.edu 36 19 47261337 47261337 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 47261337 47261337 GRIK5 19 C C T 19 PLXNB1 5364 genome.wustl.edu 36 3 48425879 48425879 + Silent SNP C C G novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 48425879 48425879 PLXNB1 3 C C G 29 USP19 10869 genome.wustl.edu 36 3 49123255 49123255 + Silent SNP C C A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 49123255 49123255 USP19 3 C C A 17 SCG3 29106 genome.wustl.edu 36 15 49761280 49761280 + Silent SNP G G C novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 49761280 49761280 SCG3 15 G G C 48 MYO5C 55930 genome.wustl.edu 36 15 50359091 50359091 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 50359091 50359091 MYO5C 15 C C T 29 FOSB 2354 genome.wustl.edu 36 19 50665942 50665942 + Missense_Mutation SNP T T G novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 50665942 50665942 FOSB 19 T T G 59 BMP15 9210 genome.wustl.edu 36 X 50676045 50676045 + Missense_Mutation SNP C A A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C A A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 50676045 50676045 BMP15 23 C A A 24 PKHD1 5314 genome.wustl.edu 36 6 51591933 51591933 + Missense_Mutation SNP A A C novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 51591933 51591933 PKHD1 6 A A C 3 C5AR1 728 genome.wustl.edu 36 19 52515843 52515843 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 52515843 52515843 C5AR1 19 G G T 45 RB1CC1 9821 genome.wustl.edu 36 8 53717642 53717642 + Nonsense_Mutation SNP C C A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 53717642 53717642 RB1CC1 8 C C A 32 VSTM2A 222008 genome.wustl.edu 36 7 54585204 54585204 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 54585204 54585204 VSTM2A 7 G G A 37 IKZF4 64375 genome.wustl.edu 36 12 54714800 54714800 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 54714800 54714800 IKZF4 12 C C G 32 OR4A13P genome.wustl.edu 36 11 54991325 54991325 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 54991325 54991325 OR4A13P 11 G G T 42 CACNA2D3 55799 genome.wustl.edu 36 3 54996819 54996819 + Nonsense_Mutation SNP A A T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 54996819 54996819 CACNA2D3 3 A A T 3 RP1 6101 genome.wustl.edu 36 8 55702208 55702208 + Silent SNP A A C novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 55702208 55702208 RP1 8 A A C 15 OR5AK2 390181 genome.wustl.edu 36 11 56513893 56513893 + Nonstop_Mutation SNP A A C novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonstop_Mutation SNP 56513893 56513893 OR5AK2 11 A A C 13 PDHB 5162 genome.wustl.edu 36 3 58389325 58389325 + Silent SNP G G A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 58389325 58389325 PDHB 3 G G A 45 SYVN1 84447 genome.wustl.edu 36 11 64653850 64653850 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 64653850 64653850 SYVN1 11 G G A 38 FCHSD2 9873 genome.wustl.edu 36 11 72231902 72231902 + Silent SNP C C T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 72231902 72231902 FCHSD2 11 C C T 19 PDZRN3 23024 genome.wustl.edu 36 3 73516571 73516571 + Silent SNP G G A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 73516571 73516571 PDZRN3 3 G G A 35 ANAPC16 119504 genome.wustl.edu 36 10 73653810 73653810 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 73653810 73653810 ANAPC16 10 G G C 33 LRRIQ3 127255 genome.wustl.edu 36 1 74279558 74279558 + Missense_Mutation SNP T A A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 74279558 74279558 LRRIQ3 1 T A A 56 PLCG2 5336 genome.wustl.edu 36 16 80528917 80528917 + Missense_Mutation SNP T T G novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 80528917 80528917 PLCG2 16 T T G 53 FLRT2 23768 genome.wustl.edu 36 14 85158757 85158757 + Silent SNP G A A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 85158757 85158757 FLRT2 14 G A A 34 COL24A1 255631 genome.wustl.edu 36 1 86297400 86297400 + Missense_Mutation SNP C A A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 86297400 86297400 COL24A1 1 C A A 21 KDM3A 55818 genome.wustl.edu 36 2 86562679 86562679 + Silent SNP C C G novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 86562679 86562679 KDM3A 2 C C G 23 TMEM67 91147 genome.wustl.edu 36 8 94878859 94878859 + Silent SNP C C T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 94878859 94878859 TMEM67 8 C C T 30 HAL 3034 genome.wustl.edu 36 12 94894533 94894533 + Silent SNP G G A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 94894533 94894533 HAL 12 G G A 33 CEP57 9702 genome.wustl.edu 36 11 95203847 95203847 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 95203847 95203847 CEP57 11 C C A 17 GPRASP2 114928 genome.wustl.edu 36 X 101857976 101857976 + Missense_Mutation SNP T G G novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 101857976 101857976 GPRASP2 23 T G G 62 SLC10A2 6555 genome.wustl.edu 36 13 102516248 102516248 + Nonsense_Mutation SNP C T T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 102516248 102516248 SLC10A2 13 C T T 21 TCP11L2 255394 genome.wustl.edu 36 12 105239497 105239497 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 105239497 105239497 TCP11L2 12 T T C 60 HACE1 57531 genome.wustl.edu 36 6 105305031 105305031 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 105305031 105305031 HACE1 6 C C G 19 TMEM38B 55151 genome.wustl.edu 36 9 107507714 107507714 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 107507714 107507714 TMEM38B 9 C C A 25 RSPO2 340419 genome.wustl.edu 36 8 109070506 109070506 + Silent SNP T T A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 109070506 109070506 RSPO2 8 T T A 51 LAMA4 3910 genome.wustl.edu 36 6 112550011 112550011 + Silent SNP G G A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 112550011 112550011 LAMA4 6 G G A 44 CADM1 23705 genome.wustl.edu 36 11 114554637 114554637 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 114554637 114554637 CADM1 11 C C A 18 TNFSF8 944 genome.wustl.edu 36 9 116706094 116706094 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 116706094 116706094 TNFSF8 9 C C T 32 REG4 83998 genome.wustl.edu 36 1 120138772 120138772 + Nonsense_Mutation SNP G G A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 120138772 120138772 REG4 1 G G A 39 USP53 54532 genome.wustl.edu 36 4 120408927 120408927 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G G C G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 120408927 120408927 USP53 4 G G C 45 PTPRZ1 5803 genome.wustl.edu 36 7 121438335 121438335 + Nonsense_Mutation SNP G G T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 121438335 121438335 PTPRZ1 7 G G T 47 SCN3B 55800 genome.wustl.edu 36 11 123014126 123014126 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 123014126 123014126 SCN3B 11 C C T 31 ODZ1 10178 genome.wustl.edu 36 X 123458777 123458777 + Missense_Mutation SNP A T T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 A A T T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 123458777 123458777 ODZ1 23 A T T 8 KIAA1109 84162 genome.wustl.edu 36 4 123487309 123487309 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 123487309 123487309 KIAA1109 4 A A G 16 FAT4 79633 genome.wustl.edu 36 4 126628179 126628179 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 126628179 126628179 FAT4 4 C C T 21 TMEM132D 121256 genome.wustl.edu 36 12 128132509 128132509 + Silent SNP C C T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 128132509 128132509 TMEM132D 12 C C T 24 NCKAP5 344148 genome.wustl.edu 36 2 133257909 133257909 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 133257909 133257909 NCKAP5 2 A A T 4 MAP3K5 4217 genome.wustl.edu 36 6 137061319 137061319 + Splice_Site_SNP SNP C C G novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 137061319 137061319 MAP3K5 6 C C G 18 WNT8A 7478 genome.wustl.edu 36 5 137447842 137447842 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 137447842 137447842 WNT8A 5 G G C 36 FAM53C 51307 genome.wustl.edu 36 5 137710460 137710460 + Silent SNP G G T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 137710460 137710460 FAM53C 5 G G T 46 PCDHGA5 56110 genome.wustl.edu 36 5 140725975 140725975 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C A C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 140725975 140725975 PCDHGA5 5 C C A 24 BCL9 607 genome.wustl.edu 36 1 145559255 145559255 + Silent SNP G G T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 145559255 145559255 BCL9 1 G G T 38 RFX5 5993 genome.wustl.edu 36 1 149581309 149581309 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 149581309 149581309 RFX5 1 C C T 32 NPR1 4881 genome.wustl.edu 36 1 151926302 151926302 + Silent SNP C C A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 151926302 151926302 NPR1 1 C C A 25 RIF1 55183 genome.wustl.edu 36 2 152028237 152028237 + Missense_Mutation SNP A A C novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 152028237 152028237 RIF1 2 A A C 3 SYNE1 23345 genome.wustl.edu 36 6 152725072 152725072 + Nonsense_Mutation SNP C A A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 152725072 152725072 SYNE1 6 C A A 30 NTRK1 4914 genome.wustl.edu 36 1 155115634 155115634 + Silent SNP C C T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 155115634 155115634 NTRK1 1 C C T 31 KIRREL 55243 genome.wustl.edu 36 1 156327870 156327870 + Silent SNP C C T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 156327870 156327870 KIRREL 1 C C T 21 CD1B 910 genome.wustl.edu 36 1 156565786 156565786 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 156565786 156565786 CD1B 1 C C A 21 C1orf226 genome.wustl.edu 36 1 160619999 160619999 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 160619999 160619999 C1orf226 1 C C G 24 GABRG2 2566 genome.wustl.edu 36 5 161463609 161463609 + Silent SNP C C A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 161463609 161463609 GABRG2 5 C C A 23 PLD1 5337 genome.wustl.edu 36 3 172887213 172887213 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 172887213 172887213 PLD1 3 T T A 59 RUFY1 80230 genome.wustl.edu 36 5 178969029 178969029 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 178969029 178969029 RUFY1 5 G G C 34 TEDDM1 127670 genome.wustl.edu 36 1 180635977 180635977 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 180635977 180635977 TEDDM1 1 C C G 32 FRZB 2487 genome.wustl.edu 36 2 183411403 183411403 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 183411403 183411403 FRZB 2 T T C 49 HECW2 57520 genome.wustl.edu 36 2 196892797 196892797 + Silent SNP G G A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 196892797 196892797 HECW2 2 G G A 40 NR5A2 2494 genome.wustl.edu 36 1 198356604 198356604 + Missense_Mutation SNP A A C novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 198356604 198356604 NR5A2 1 A A C 5 CACNA1S 779 genome.wustl.edu 36 1 199327481 199327481 + Silent SNP G G A novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 199327481 199327481 CACNA1S 1 G G A 34 RYR2 6262 genome.wustl.edu 36 1 236031821 236031821 + Silent SNP A A T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 236031821 236031821 RYR2 1 A A T 11 ADSS 159 genome.wustl.edu 36 1 242653964 242653964 + Silent SNP G G T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 242653964 242653964 ADSS 1 G G T 46 FBXL5 26234 genome.wustl.edu 36 4 15237620 15237629 + Frame_Shift_Del DEL AGTCTGGGTA AGTCTGGGTA - novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 AGTCTGGGTA AGTCTGGGTA Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 15237620 15237629 FBXL5 4 AGTCTGGGTA AGTCTGGGTA - 7 PARD3 56288 genome.wustl.edu 36 10 34660243 34660254 + In_Frame_Del DEL GACCCAGGGAAG GACCCAGGGAAG - novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 GACCCAGGGAAG GACCCAGGGAAG GACCCAGGGAAG - GACCCAGGGAAG GACCCAGGGAAG Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU In_Frame_Del DEL 34660243 34660254 PARD3 10 GACCCAGGGAAG GACCCAGGGAAG - 33 ZNF527 84503 genome.wustl.edu 36 19 42571282 42571289 + Frame_Shift_Del DEL AATTTAGT AATTTAGT - novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 AATTTAGT AATTTAGT AATTTAGT - AATTTAGT AATTTAGT Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 42571282 42571289 ZNF527 19 AATTTAGT AATTTAGT - 9 ENSG00000166104 genome.wustl.edu 36 15 60328023 60328041 + Frame_Shift_Del DEL GCTGTTGCTACGGCCAGAG GCTGTTGCTACGGCCAGAG - novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 GCTGTTGCTACGGCCAGAG GCTGTTGCTACGGCCAGAG - - GCTGTTGCTACGGCCAGAG - Unknown Valid LOH 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 60328023 60328041 ENSG00000166104 15 GCTGTTGCTACGGCCAGAG GCTGTTGCTACGGCCAGAG - 46 NAA35 60560 genome.wustl.edu 36 9 87746931 87746931 + Frame_Shift_Del DEL G G - novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 87746931 87746931 NAA35 9 G G - 35 ACPP 55 genome.wustl.edu 36 3 133558249 133558269 + In_Frame_Del DEL ATGAGACGCAGCACGAGCCGT ATGAGACGCAGCACGAGCCGT - novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 ATGAGACGCAGCACGAGCCGT ATGAGACGCAGCACGAGCCGT Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU In_Frame_Del DEL 133558249 133558269 ACPP 3 ATGAGACGCAGCACGAGCCGT ATGAGACGCAGCACGAGCCGT - 4 SMC1B 27127 genome.wustl.edu 36 22 44168278 44168278 + Missense_Mutation SNP C A C novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C A C C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx WashU Missense_Mutation SNP 44168278 44168278 SMC1B 22 C A C 20 GPR133 283383 genome.wustl.edu 36 12 130053283 130053283 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1498-01 TCGA-13-1498-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 130053283 130053283 GPR133 12 C C T 21