Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context DMRT2 10655 genome.wustl.edu 36 9 1046470 1046470 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 1046470 1046470 DMRT2 9 C C G 18 CACNA1C 775 genome.wustl.edu 36 12 2659073 2659073 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 2659073 2659073 CACNA1C 12 C C A 26 CNTN4 152330 genome.wustl.edu 36 3 3005054 3005054 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 3005054 3005054 CNTN4 3 C C T 24 OR51A4 401666 genome.wustl.edu 36 11 4924365 4924365 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 4924365 4924365 OR51A4 11 C C T 17 CUBN 8029 genome.wustl.edu 36 10 17125901 17125901 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 17125901 17125901 CUBN 10 T T A 55 IFNB1 3456 genome.wustl.edu 36 9 21067536 21067536 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 21067536 21067536 IFNB1 9 A A T 8 CMAS 55907 genome.wustl.edu 36 12 22105655 22105655 + Splice_Site_SNP SNP T T G novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 22105655 22105655 CMAS 12 T T G 57 ARHGAP21 57584 genome.wustl.edu 36 10 24926891 24926891 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 24926891 24926891 ARHGAP21 10 G G C 48 GPR158 57512 genome.wustl.edu 36 10 25927612 25927612 + Silent SNP T T C novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 25927612 25927612 GPR158 10 T T C 58 AZI2 64343 genome.wustl.edu 36 3 28355111 28355111 + Splice_Site_SNP SNP C C G novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 28355111 28355111 AZI2 3 C C G 28 SPEF2 79925 genome.wustl.edu 36 5 35809758 35809758 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 35809758 35809758 SPEF2 5 C C T 29 SRPK1 6732 genome.wustl.edu 36 6 35945246 35945246 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 35945246 35945246 SRPK1 6 C C T 30 SLC26A8 116369 genome.wustl.edu 36 6 36019678 36019678 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 36019678 36019678 SLC26A8 6 C C T 22 ZFAND3 60685 genome.wustl.edu 36 6 38192432 38192432 + Silent SNP G G T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 38192432 38192432 ZFAND3 6 G G T 44 SLC4A1 6521 genome.wustl.edu 36 17 39690943 39690944 + Missense DNP CC CC AG novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 CC CC CC AG CC CC Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense DNP 39690943 39690944 SLC4A1 17 CC CC AG 26 ADAM2 2515 genome.wustl.edu 36 8 39721571 39721571 + Splice_Site_SNP SNP T T A novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 39721571 39721571 ADAM2 8 T T A 55 NPHS1 4868 genome.wustl.edu 36 19 41026974 41026974 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 41026974 41026974 NPHS1 19 G G A 39 UBR2 23304 genome.wustl.edu 36 6 42681509 42681509 + Silent SNP T T C novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 42681509 42681509 UBR2 6 T T C 54 B2M 567 genome.wustl.edu 36 15 42791037 42791037 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 42791037 42791037 B2M 15 A A G 12 SLC28A2 9153 genome.wustl.edu 36 15 43347163 43347163 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 43347163 43347163 SLC28A2 15 C C T 25 PHF21B 112885 genome.wustl.edu 36 22 43670621 43670621 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 43670621 43670621 PHF21B 22 C C T 27 LTBP4 8425 genome.wustl.edu 36 19 45807382 45807382 + Silent SNP C C G novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 45807382 45807382 LTBP4 19 C C G 29 PPYR1 5540 genome.wustl.edu 36 10 46507166 46507166 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 46507166 46507166 PPYR1 10 C C T 19 DDX23 9416 genome.wustl.edu 36 12 47513508 47513508 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 47513508 47513508 DDX23 12 C C A 28 CD2AP 23607 genome.wustl.edu 36 6 47681952 47681952 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 47681952 47681952 CD2AP 6 C C T 23 PKD1L1 168507 genome.wustl.edu 36 7 47843084 47843084 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 47843084 47843084 PKD1L1 7 G G C 38 RB1 5925 genome.wustl.edu 36 13 47937406 47937422 + Indel Indel TACGGATTCCTGGAGGG TACGGATTCCTGGAGGG - novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Indel Indel 47937406 47937422 RB1 13 TACGGATTCCTGGAGGG TACGGATTCCTGGAGGG - 61 TTLL8 164714 genome.wustl.edu 36 22 48821802 48821802 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 48821802 48821802 TTLL8 22 T T C 51 MOV10L1 54456 genome.wustl.edu 36 22 48906086 48906086 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 48906086 48906086 MOV10L1 22 G G T 44 BSN 8927 genome.wustl.edu 36 3 49670021 49670021 + Silent SNP G G A novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 49670021 49670021 BSN 3 G G A 39 OPRK1 4986 genome.wustl.edu 36 8 54304520 54304520 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 54304520 54304520 OPRK1 8 A A G 7 ZBP1 81030 genome.wustl.edu 36 20 55623466 55623466 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55623466 55623466 ZBP1 20 C C T 27 OS9 10956 genome.wustl.edu 36 12 56398264 56398265 + Missense DNP GA GA TT novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 GA GA GA TT GA GA Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense DNP 56398264 56398265 OS9 12 GA GA TT 33 AASDH 132949 genome.wustl.edu 36 4 56899386 56899386 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 56899386 56899386 AASDH 4 A A G 4 ZNF577 84765 genome.wustl.edu 36 19 57068423 57068423 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 57068423 57068423 ZNF577 19 T T C 54 PRPF31 26121 genome.wustl.edu 36 19 59319829 59319829 + Silent SNP C C T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 59319829 59319829 PRPF31 19 C C T 31 ENSG00000166104 genome.wustl.edu 36 15 60326813 60326813 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 60326813 60326813 ENSG00000166104 15 C C T 23 MDM1 56890 genome.wustl.edu 36 12 67006998 67006998 + Silent SNP A A C novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 67006998 67006998 MDM1 12 A A C 11 SLC4A4 8671 genome.wustl.edu 36 4 72535849 72535849 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 72535849 72535849 SLC4A4 4 A A T 8 ZNF711 7552 genome.wustl.edu 36 X 84413035 84413035 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 84413035 84413035 ZNF711 23 T T C 50 AGTPBP1 23287 genome.wustl.edu 36 9 87390234 87390234 + Silent SNP T T A novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 87390234 87390234 AGTPBP1 9 T T A 63 EML5 161436 genome.wustl.edu 36 14 88275019 88275019 + Silent SNP T T C novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 88275019 88275019 EML5 14 T T C 63 FAT3 120114 genome.wustl.edu 36 11 92172530 92172530 + Missense_Mutation SNP T T G novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 92172530 92172530 FAT3 11 T T G 56 BRDT 676 genome.wustl.edu 36 1 92214479 92214479 + Missense_Mutation SNP T T G novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 92214479 92214479 BRDT 1 T T G 52 C6orf167 253714 genome.wustl.edu 36 6 97727664 97727664 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 97727664 97727664 C6orf167 6 C C G 29 ZSCAN21 7589 genome.wustl.edu 36 7 99499717 99499717 + Silent SNP C C G novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 99499717 99499717 ZSCAN21 7 C C G 22 CENPE 1062 genome.wustl.edu 36 4 104249486 104249486 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 104249486 104249486 CENPE 4 A A G 1 CXorf57 55086 genome.wustl.edu 36 X 105755132 105755132 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 105755132 105755132 CXorf57 23 C C T 22 PIK3CG 5294 genome.wustl.edu 36 7 106296377 106296377 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 106296377 106296377 PIK3CG 7 C C A 24 ST6GAL2 84620 genome.wustl.edu 36 2 106815517 106815517 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 106815517 106815517 ST6GAL2 2 G G A 45 DDX18 8886 genome.wustl.edu 36 2 118303345 118303345 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 118303345 118303345 DDX18 2 T T C 63 ARHGAP31 57514 genome.wustl.edu 36 3 120615793 120615793 + Missense_Mutation SNP A A C novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 120615793 120615793 ARHGAP31 3 A A C 4 MAPKAP1 79109 genome.wustl.edu 36 9 127270182 127270182 + Missense_Mutation SNP T T C novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 127270182 127270182 MAPKAP1 9 T T C 58 MAP3K2 10746 genome.wustl.edu 36 2 127788865 127788865 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 127788865 127788865 MAP3K2 2 G G C 44 LAMA2 3908 genome.wustl.edu 36 6 129754469 129754469 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 129754469 129754469 LAMA2 6 G G A 41 SLC37A3 84255 genome.wustl.edu 36 7 139728729 139728729 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 139728729 139728729 SLC37A3 7 C C T 20 PCDHB18 54660 genome.wustl.edu 36 5 140595205 140595205 + Missense_Mutation SNP G A A novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 140595205 140595205 PCDHB18 5 G A A 37 MGST2 4258 genome.wustl.edu 36 4 140844720 140844720 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 140844720 140844720 MGST2 4 A A T 5 INPP4B 8821 genome.wustl.edu 36 4 143262846 143262846 + Missense_Mutation SNP C C A novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 143262846 143262846 INPP4B 4 C C A 31 OR2F1 26211 genome.wustl.edu 36 7 143288443 143288443 + Missense_Mutation SNP G G T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 143288443 143288443 OR2F1 7 G G T 43 CNTNAP2 26047 genome.wustl.edu 36 7 146460357 146460357 + Missense_Mutation SNP A A C novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 146460357 146460357 CNTNAP2 7 A A C 13 HIST2H3PS2 440686 genome.wustl.edu 36 1 147667142 147667142 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 147667142 147667142 HIST2H3PS2 1 G G A 39 MBD5 55777 genome.wustl.edu 36 2 148964276 148964276 + Silent SNP A A C novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 148964276 148964276 MBD5 2 A A C 11 ZNF687 57592 genome.wustl.edu 36 1 149525896 149525896 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 149525896 149525896 ZNF687 1 G G A 45 HPS3 84343 genome.wustl.edu 36 3 150368384 150368384 + Missense_Mutation SNP A A C novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 150368384 150368384 HPS3 3 A A C 1 CP 1356 genome.wustl.edu 36 3 150413013 150413013 + Silent SNP A A G novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 150413013 150413013 CP 3 A A G 16 LOC100130935 genome.wustl.edu 36 X 151647365 151647365 + Silent SNP G G T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 151647365 151647365 LOC100130935 23 G G T 35 FLAD1 80308 genome.wustl.edu 36 1 153227424 153227424 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 153227424 153227424 FLAD1 1 G G C 45 FCRL3 115352 genome.wustl.edu 36 1 155933778 155933778 + Missense_Mutation SNP A A T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 155933778 155933778 FCRL3 1 A A T 8 PIGM 93183 genome.wustl.edu 36 1 158267377 158267377 + Silent SNP A A G novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 158267377 158267377 PIGM 1 A A G 1 SCN2A 6326 genome.wustl.edu 36 2 165878420 165878420 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 165878420 165878420 SCN2A 2 C C T 22 SCN1A 6323 genome.wustl.edu 36 2 166560775 166560775 + Silent SNP T T A novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 166560775 166560775 SCN1A 2 T T A 58 CDHR2 54825 genome.wustl.edu 36 5 175924986 175924986 + Silent SNP C C T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 175924986 175924986 CDHR2 5 C C T 30 HK3 3101 genome.wustl.edu 36 5 176255732 176255732 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 176255732 176255732 HK3 5 C C T 22 TTN 7273 genome.wustl.edu 36 2 179324750 179324750 + Missense_Mutation SNP T T A novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 179324750 179324750 TTN 2 T T A 52 LAMC1 3915 genome.wustl.edu 36 1 181346371 181346371 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 181346371 181346371 LAMC1 1 C C G 23 NCF2 4688 genome.wustl.edu 36 1 181810245 181810245 + Missense_Mutation SNP C C G novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 181810245 181810245 NCF2 1 C C G 22 LRCH3 84859 genome.wustl.edu 36 3 199043532 199043532 + Missense_Mutation SNP G G C novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 199043532 199043532 LRCH3 3 G G C 33 LMOD1 25802 genome.wustl.edu 36 1 200135833 200135833 + Missense_Mutation SNP C C T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 200135833 200135833 LMOD1 1 C C T 30 ARL8A 127829 genome.wustl.edu 36 1 200371488 200371488 + Silent SNP T T C novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 200371488 200371488 ARL8A 1 T T C 57 CENPF 1063 genome.wustl.edu 36 1 212882202 212882202 + Silent SNP C C T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 212882202 212882202 CENPF 1 C C T 28 RHBDD1 84236 genome.wustl.edu 36 2 227487240 227487240 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 227487240 227487240 RHBDD1 2 A A G 10 SP110 3431 genome.wustl.edu 36 2 230745064 230745064 + Nonsense_Mutation SNP T T A novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 230745064 230745064 SP110 2 T T A 61 KIF26B 55083 genome.wustl.edu 36 1 243928855 243928855 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 243928855 243928855 KIF26B 1 G G A 38 TP53 7157 genome.wustl.edu 36 17 7517583 7517583 + Frame_Shift_Del DEL G G - novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 G G G - G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 7517583 7517583 TP53 17 G G - 35 C1orf144 26099 genome.wustl.edu 36 1 16592355 16592356 + Frame_Shift_Ins INS - - ATTGT novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 - - Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Ins INS 16592355 16592356 C1orf144 1 - - ATTGT 19 G2E3 55632 genome.wustl.edu 36 14 30128370 30128374 + Frame_Shift_Del DEL AAAGA AAAGA - novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 AAAGA AAAGA AAAGA - AAAGA AAAGA Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 30128370 30128374 G2E3 14 AAAGA AAAGA - 5 CYP2B6 1555 genome.wustl.edu 36 19 46210210 46210210 + Nonsense_Mutation SNP C C T rs34097093 Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C T C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 46210210 46210210 CYP2B6 19 C C T 23 COL13A1 1305 genome.wustl.edu 36 10 71348079 71348079 + Silent SNP G G A novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 71348079 71348079 COL13A1 10 G G A 35 IGHM genome.wustl.edu 36 14 105391761 105391761 + Nonsense_Mutation SNP C C A novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 105391761 105391761 IGHM 14 C C A 21 WDR24 84219 genome.wustl.edu 36 16 679276 679276 + Silent SNP C C T novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 679276 679276 WDR24 16 C C T 23 KLHL26 55295 genome.wustl.edu 36 19 18640040 18640040 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 18640040 18640040 KLHL26 19 G G A 38 PPM1F 9647 genome.wustl.edu 36 22 20617785 20617785 + Missense_Mutation SNP A A G novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20617785 20617785 PPM1F 22 A A G 1 SCN10A 6336 genome.wustl.edu 36 3 38768977 38768977 + Missense_Mutation SNP G G A novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 38768977 38768977 SCN10A 3 G G A 39 FAM90A10 441328 genome.wustl.edu 36 8 7664674 7664674 + Missense_Mutation SNP C A A novel Unknown TCGA-13-1509-01 TCGA-13-1509-10 C C A A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7664674 7664674 FAM90A10 8 C A A 26 HLA-A 3105 genome.wustl.edu 36 6 30018561 30018576 + Frame_Shift_Del DEL GCGGGGAGCCCCGCTT GCGGGGAGCCCCGCTT - Unknown TCGA-13-1509-01 TCGA-13-1509-10 GCGGGGAGCCCCGCTT GCGGGGAGCCCCGCTT GCGGGGAGCCCCGCTT - GCGGGGAGCCCCGCTT GCGGGGAGCCCCGCTT Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 30018561 30018576 HLA-A 6 GCGGGGAGCCCCGCTT GCGGGGAGCCCCGCTT - 38