Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context IFI44 10561 broad.mit.edu 36 1 78888697 78888697 + Missense_Mutation SNP A A G novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 78888697 78888697 IFI44 1 A A G 8 KCNA3 3738 broad.mit.edu 36 1 111017919 111017919 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 111017919 111017919 KCNA3 1 C C T 31 IQGAP3 128239 broad.mit.edu 36 1 154770282 154770282 + Nonsense_Mutation SNP C C A novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 154770282 154770282 IQGAP3 1 C C A 30 SEC16B 89866 broad.mit.edu 36 1 176183693 176183693 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 176183693 176183693 SEC16B 1 C C G 30 GFRA1 2674 broad.mit.edu 36 10 117961132 117961132 + Splice_Site_SNP SNP C C A novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 C A C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Splice_Site_SNP SNP 117961132 117961132 GFRA1 10 C C A 18 C10orf137 26098 broad.mit.edu 36 10 127404246 127404246 + Missense_Mutation SNP A A G novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 A G A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 127404246 127404246 C10orf137 10 A A G 4 C10orf137 26098 broad.mit.edu 36 10 127426434 127426434 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 127426434 127426434 C10orf137 10 G G T 36 PTPN5 84867 broad.mit.edu 36 11 18710749 18710749 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 G A G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 18710749 18710749 PTPN5 11 G G A 40 FOLH1B 219595 broad.mit.edu 36 11 89048986 89048986 + Splice_Site_SNP SNP T T A novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 89048986 89048986 FOLH1B 11 T T A 59 CASP1 834 broad.mit.edu 36 11 104406280 104406280 + Missense_Mutation SNP T T A novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 T A T T Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 104406280 104406280 CASP1 11 T T A 52 KRT72 140807 broad.mit.edu 36 12 51267845 51267845 + Missense_Mutation SNP T T G novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 51267845 51267845 KRT72 12 T T G 62 NR1H4 9971 broad.mit.edu 36 12 99428782 99428783 + Missense_Mutation DNP CC CC AA novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 99428782 99428783 NR1H4 12 CC CC AA 18 ERCC5 2073 broad.mit.edu 36 13 102302613 102302613 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 102302613 102302613 ERCC5 13 G G T 43 SERPINA10 51156 broad.mit.edu 36 14 93826141 93826141 + Missense_Mutation SNP T T G novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 93826141 93826141 SERPINA10 14 T T G 49 AHNAK2 113146 broad.mit.edu 36 14 104489803 104489803 + Silent SNP T T C novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 104489803 104489803 AHNAK2 14 T T C 49 ZNF48 197407 broad.mit.edu 36 16 30317288 30317288 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 30317288 30317288 ZNF48 16 C C G 32 CES7 221223 broad.mit.edu 36 16 54465369 54465369 + Missense_Mutation SNP A A G novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 A G A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 54465369 54465369 CES7 16 A A G 6 CHRNB1 1140 broad.mit.edu 36 17 7299354 7299354 + Silent SNP C C T novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 7299354 7299354 CHRNB1 17 C C T 24 NF1 4763 broad.mit.edu 36 17 26678962 26678962 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 G C G G Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 26678962 26678962 NF1 17 G G C 42 WNK4 65266 broad.mit.edu 36 17 38201262 38201262 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 38201262 38201262 WNK4 17 C C G 32 LPIN2 9663 broad.mit.edu 36 18 2941130 2941130 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 2941130 2941130 LPIN2 18 C C G 24 PRX 57716 broad.mit.edu 36 19 45593631 45593631 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 45593631 45593631 PRX 19 G G A 38 SIGLEC12 89858 broad.mit.edu 36 19 56695389 56695389 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56695389 56695389 SIGLEC12 19 C C A 22 NLRP11 204801 broad.mit.edu 36 19 60995521 60995521 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 60995521 60995521 NLRP11 19 G G A 40 ANTXR1 84168 broad.mit.edu 36 2 69151305 69151305 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 69151305 69151305 ANTXR1 2 G G C 33 ZAP70 7535 broad.mit.edu 36 2 97717433 97717433 + Missense_Mutation SNP A A G novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 A G A A Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 97717433 97717433 ZAP70 2 A A G 10 SF3B1 23451 broad.mit.edu 36 2 197966064 197966064 + Silent SNP C C T novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 197966064 197966064 SF3B1 2 C C T 17 SH3BP4 23677 broad.mit.edu 36 2 235615920 235615920 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 235615920 235615920 SH3BP4 2 C C T 27 PPP6R2 9701 broad.mit.edu 36 22 49204738 49204738 + Silent SNP C C T novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 C T C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Silent SNP 49204738 49204738 PPP6R2 22 C C T 28 DNAH1 25981 broad.mit.edu 36 3 52332863 52332863 + Splice_Site_SNP SNP G G A novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 52332863 52332863 DNAH1 3 G G A 35 ARGFX 503582 broad.mit.edu 36 3 122787591 122787591 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 122787591 122787591 ARGFX 3 G G T 33 ANXA5 308 broad.mit.edu 36 4 122812242 122812242 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 122812242 122812242 ANXA5 4 C C G 29 BAT3 7917 broad.mit.edu 36 6 31715337 31715337 + Silent SNP G G A novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 31715337 31715337 BAT3 6 G G A 39 RXRB 6257 broad.mit.edu 36 6 33273584 33273584 + Silent SNP C C T novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 33273584 33273584 RXRB 6 C C T 28 EFHC1 114327 broad.mit.edu 36 6 52437805 52437805 + Missense_Mutation SNP A A C novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 52437805 52437805 EFHC1 6 A A C 11 RIMS1 22999 broad.mit.edu 36 6 73165447 73165447 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 73165447 73165447 RIMS1 6 G G A 37 GRIK2 2898 broad.mit.edu 36 6 102589990 102589990 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 102589990 102589990 GRIK2 6 G G A 33 HACE1 57531 broad.mit.edu 36 6 105387659 105387659 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 105387659 105387659 HACE1 6 G G A 42 SBDS 51119 broad.mit.edu 36 7 66093671 66093671 + Missense_Mutation SNP T T A novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 T A T T Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 66093671 66093671 SBDS 7 T T A 59 ATP5J2 9551 broad.mit.edu 36 7 98895697 98895697 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 C G C C Unknown Valid Somatic x x Sequenom_PCR_WGA x Broad Missense_Mutation SNP 98895697 98895697 ATP5J2 7 C C G 30 GPR37 2861 broad.mit.edu 36 7 124191244 124191244 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 124191244 124191244 GPR37 7 C C G 24 KIAA1147 57189 broad.mit.edu 36 7 141010468 141010468 + Missense_Mutation SNP T T C novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 141010468 141010468 KIAA1147 7 T T C 60 COL22A1 169044 broad.mit.edu 36 8 139766688 139766688 + Missense_Mutation SNP T T C novel Unknown TCGA-23-1027-01 TCGA-23-1027-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 139766688 139766688 COL22A1 8 T T C 50