Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context WNK1 65125 genome.wustl.edu 36 12 864283 864283 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 864283 864283 WNK1 12 C C T 25 ITPR1 3708 genome.wustl.edu 36 3 4791925 4791925 + Splice_Site_SNP SNP G G T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 4791925 4791925 ITPR1 3 G G T 33 OR51T1 401665 genome.wustl.edu 36 11 4860452 4860452 + Silent SNP A A C novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 4860452 4860452 OR51T1 11 A A C 7 VWF 7450 genome.wustl.edu 36 12 6037406 6037406 + Silent SNP G G A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 6037406 6037406 VWF 12 G G A 40 SYT9 143425 genome.wustl.edu 36 11 7398412 7398412 + Silent SNP G G A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 7398412 7398412 SYT9 11 G G A 34 ARHGEF15 22899 genome.wustl.edu 36 17 8156242 8156242 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 8156242 8156242 ARHGEF15 17 C C G 18 MARCH2 51257 genome.wustl.edu 36 19 8397561 8397561 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 8397561 8397561 MARCH2 19 G G C 46 MRVI1 10335 genome.wustl.edu 36 11 10607749 10607749 + Silent SNP C C T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 10607749 10607749 MRVI1 11 C C T 27 TARDBP 23435 genome.wustl.edu 36 1 11001432 11001432 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 11001432 11001432 TARDBP 1 C C T 19 FBLN2 2199 genome.wustl.edu 36 3 13654167 13654167 + Nonsense_Mutation SNP C C A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 13654167 13654167 FBLN2 3 C C A 27 FBXW10 10517 genome.wustl.edu 36 17 18595091 18595091 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 18595091 18595091 FBXW10 17 G G C 35 PLEKHA5 54477 genome.wustl.edu 36 12 19410169 19410169 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19410169 19410169 PLEKHA5 12 C C G 29 SLC24A2 25769 genome.wustl.edu 36 9 19540152 19540152 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19540152 19540152 SLC24A2 9 G G T 44 GABPA 2551 genome.wustl.edu 36 21 26043285 26043285 + Missense_Mutation SNP A A C novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 26043285 26043285 GABPA 21 A A C 7 DSG3 1830 genome.wustl.edu 36 18 27309842 27309842 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 27309842 27309842 DSG3 18 C C A 32 YTHDF2 51441 genome.wustl.edu 36 1 28942432 28942432 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 28942432 28942432 YTHDF2 1 C C T 31 PPP1R10 5514 genome.wustl.edu 36 6 30680465 30680465 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 30680465 30680465 PPP1R10 6 G G T 46 NRG1 3084 genome.wustl.edu 36 8 32625179 32625179 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 32625179 32625179 NRG1 8 G G T 47 ZSCAN20 7579 genome.wustl.edu 36 1 33717802 33717802 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 33717802 33717802 ZSCAN20 1 C C A 18 EAPP 55837 genome.wustl.edu 36 14 34068321 34068321 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 34068321 34068321 EAPP 14 C C G 32 AGXT2 64902 genome.wustl.edu 36 5 35071120 35071120 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 35071120 35071120 AGXT2 5 C C G 24 RPN2 6185 genome.wustl.edu 36 20 35295860 35295860 + Silent SNP C C T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 35295860 35295860 RPN2 20 C C T 32 CDC6 990 genome.wustl.edu 36 17 35700993 35700993 + Silent SNP A A C novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 35700993 35700993 CDC6 17 A A C 15 CDC6 990 genome.wustl.edu 36 17 35710691 35710691 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 35710691 35710691 CDC6 17 G G T 41 AOC3 8639 genome.wustl.edu 36 17 38258187 38258187 + Missense_Mutation SNP A T T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 A A T T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 38258187 38258187 AOC3 17 A T T 7 ETS2 2114 genome.wustl.edu 36 21 39113551 39113551 + Missense_Mutation SNP G T T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G T T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 39113551 39113551 ETS2 21 G T T 39 ZNF461 92283 genome.wustl.edu 36 19 41821987 41821987 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 41821987 41821987 ZNF461 19 C C A 24 EML4 27436 genome.wustl.edu 36 2 42375786 42375786 + Silent SNP T T A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 42375786 42375786 EML4 2 T T A 64 SPG11 80208 genome.wustl.edu 36 15 42740027 42740027 + Silent SNP G G A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 42740027 42740027 SPG11 15 G G A 36 ZNF691 51058 genome.wustl.edu 36 1 43089259 43089259 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 43089259 43089259 ZNF691 1 G G A 45 SIPA1L3 23094 genome.wustl.edu 36 19 43302101 43302101 + Silent SNP G G A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 43302101 43302101 SIPA1L3 19 G G A 43 SPATA5L1 79029 genome.wustl.edu 36 15 43500622 43500622 + Silent SNP G G A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 43500622 43500622 SPATA5L1 15 G G A 40 RYR1 6261 genome.wustl.edu 36 19 43616323 43616323 + Missense_Mutation SNP A A T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 43616323 43616323 RYR1 19 A A T 9 MSH2 4436 genome.wustl.edu 36 2 47510535 47510535 + Silent SNP G G A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 47510535 47510535 MSH2 2 G G A 35 SOS2 6655 genome.wustl.edu 36 14 49655211 49655211 + Silent SNP C C A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 49655211 49655211 SOS2 14 C C A 25 SNAI2 6591 genome.wustl.edu 36 8 49994099 49994099 + Silent SNP C C A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 49994099 49994099 SNAI2 8 C C A 22 TCF4 6925 genome.wustl.edu 36 18 51046486 51046486 + Nonsense_Mutation SNP C C A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 51046486 51046486 TCF4 18 C C A 22 DGKA 1606 genome.wustl.edu 36 12 54620698 54620698 + Silent SNP G G A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 54620698 54620698 DGKA 12 G G A 39 FBXO34 55030 genome.wustl.edu 36 14 54888821 54888821 + Missense_Mutation SNP T T A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 54888821 54888821 FBXO34 14 T T A 53 RTN4 57142 genome.wustl.edu 36 2 55068340 55068340 + Splice_Site_SNP SNP T T C novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 55068340 55068340 RTN4 2 T T C 53 OR5M1 390168 genome.wustl.edu 36 11 56136973 56136973 + Silent SNP G G C novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 56136973 56136973 OR5M1 11 G G C 45 MS4A2 2206 genome.wustl.edu 36 11 59619683 59619683 + Missense_Mutation SNP T T C novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 59619683 59619683 MS4A2 11 T T C 51 CDH8 1006 genome.wustl.edu 36 16 60408994 60408994 + Silent SNP C C A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 60408994 60408994 CDH8 16 C C A 23 PRICKLE2 166336 genome.wustl.edu 36 3 64060432 64060432 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 64060432 64060432 PRICKLE2 3 G G T 34 SDK2 54549 genome.wustl.edu 36 17 68876216 68876216 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 68876216 68876216 SDK2 17 C C A 18 CCDC33 80125 genome.wustl.edu 36 15 72410091 72410091 + Silent SNP G G A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 72410091 72410091 CCDC33 15 G G A 47 RIMS1 22999 genome.wustl.edu 36 6 73025449 73025449 + Silent SNP T T C novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 73025449 73025449 RIMS1 6 T T C 54 C10orf54 64115 genome.wustl.edu 36 10 73190679 73190679 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 73190679 73190679 C10orf54 10 C C G 25 SCEL 8796 genome.wustl.edu 36 13 77065663 77065663 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 77065663 77065663 SCEL 13 G G C 45 RASGRF1 5923 genome.wustl.edu 36 15 77126261 77126261 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 77126261 77126261 RASGRF1 15 C C G 29 NUP54 53371 genome.wustl.edu 36 4 77270860 77270860 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 77270860 77270860 NUP54 4 C C T 29 ACAN 176 genome.wustl.edu 36 15 87183079 87183079 + Silent SNP A A G novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 87183079 87183079 ACAN 15 A A G 15 TUBB3 10381 genome.wustl.edu 36 16 88527421 88527421 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 88527421 88527421 TUBB3 16 G G A 39 LCOR 84458 genome.wustl.edu 36 10 98705139 98705139 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 98705139 98705139 LCOR 10 G G C 36 MTTP 4547 genome.wustl.edu 36 4 100762958 100762958 + Missense_Mutation SNP A A T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 100762958 100762958 MTTP 4 A A T 5 COL15A1 1306 genome.wustl.edu 36 9 100850068 100850068 + Missense_Mutation SNP A A C novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 100850068 100850068 COL15A1 9 A A C 5 CUX1 1523 genome.wustl.edu 36 7 101627217 101627217 + Silent SNP T T G novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 101627217 101627217 CUX1 7 T T G 59 RNF20 56254 genome.wustl.edu 36 9 103352710 103352710 + Missense_Mutation SNP T T G novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 103352710 103352710 RNF20 9 T T G 59 SLC25A32 81034 genome.wustl.edu 36 8 104489040 104489040 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 104489040 104489040 SLC25A32 8 G G T 33 TMEM119 338773 genome.wustl.edu 36 12 107509713 107509713 + Silent SNP G A A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 107509713 107509713 TMEM119 12 G A A 38 KCNA10 3744 genome.wustl.edu 36 1 110862818 110862818 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 110862818 110862818 KCNA10 1 C C G 24 KCNA3 3738 genome.wustl.edu 36 1 111018078 111018078 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 111018078 111018078 KCNA3 1 C C T 31 LVRN 206338 genome.wustl.edu 36 5 115351451 115351451 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 115351451 115351451 LVRN 5 G G T 46 BACE1 23621 genome.wustl.edu 36 11 116666422 116666422 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 116666422 116666422 BACE1 11 G G C 34 GLI2 2736 genome.wustl.edu 36 2 121464516 121464516 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 121464516 121464516 GLI2 2 G G A 42 TRPC3 7222 genome.wustl.edu 36 4 123043572 123043572 + Missense_Mutation SNP A A G novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 123043572 123043572 TRPC3 4 A A G 2 OR6X1 390260 genome.wustl.edu 36 11 123130200 123130200 + Silent SNP C C T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 123130200 123130200 OR6X1 11 C C T 25 SCAI 286205 genome.wustl.edu 36 9 126868126 126868126 + Missense_Mutation SNP T T A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 126868126 126868126 SCAI 9 T T A 63 KRT18P44 139748 genome.wustl.edu 36 X 127676354 127676354 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 127676354 127676354 KRT18P44 23 G G A 42 TSGA13 114960 genome.wustl.edu 36 7 130008148 130008148 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 130008148 130008148 TSGA13 7 C C T 30 ENSG00000214100 genome.wustl.edu 36 2 130399744 130399744 + Missense_Mutation SNP C T T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 130399744 130399744 ENSG00000214100 2 C T T 17 EXOSC2 23404 genome.wustl.edu 36 9 132568284 132568284 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 132568284 132568284 EXOSC2 9 G G T 35 PCDHGB4 8641 genome.wustl.edu 36 5 140749075 140749075 + Silent SNP G G T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 140749075 140749075 PCDHGB4 5 G G T 42 C3orf58 205428 genome.wustl.edu 36 3 145187105 145187105 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 145187105 145187105 C3orf58 3 G G C 46 TMOD4 29765 genome.wustl.edu 36 1 149410549 149410549 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 149410549 149410549 TMOD4 1 C C A 18 PASD1 139135 genome.wustl.edu 36 X 150544610 150544610 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 150544610 150544610 PASD1 23 C C T 28 CCDC69 26112 genome.wustl.edu 36 5 150561404 150561404 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 150561404 150561404 CCDC69 5 G G C 38 GALNTL5 168391 genome.wustl.edu 36 7 151347688 151347688 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 151347688 151347688 GALNTL5 7 G G A 47 ATP2B3 492 genome.wustl.edu 36 X 152498933 152498933 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 152498933 152498933 ATP2B3 23 G G A 40 PRPF40A 55660 genome.wustl.edu 36 2 153280796 153280796 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 153280796 153280796 PRPF40A 2 G G C 42 SLAMF9 89886 genome.wustl.edu 36 1 158188870 158188870 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 158188870 158188870 SLAMF9 1 G G T 33 FAM153B 202134 genome.wustl.edu 36 5 175452856 175452856 + Silent SNP A A T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 175452856 175452856 FAM153B 5 A A T 8 UIMC1 51720 genome.wustl.edu 36 5 176329306 176329306 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 176329306 176329306 UIMC1 5 C C T 23 RNASEL 6041 genome.wustl.edu 36 1 180821901 180821901 + Missense_Mutation SNP T T A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 180821901 180821901 RNASEL 1 T T A 57 UBE2E3 10477 genome.wustl.edu 36 2 181555080 181555080 + Silent SNP G G T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 181555080 181555080 UBE2E3 2 G G T 39 HMCN1 83872 genome.wustl.edu 36 1 184402616 184402616 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 184402616 184402616 HMCN1 1 G G T 45 C4BPB 725 genome.wustl.edu 36 1 205336565 205336565 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 205336565 205336565 C4BPB 1 G G T 36 PIKFYVE 200576 genome.wustl.edu 36 2 208909874 208909874 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 208909874 208909874 PIKFYVE 2 C C G 20 USH2A 7399 genome.wustl.edu 36 1 214487150 214487150 + Nonsense_Mutation SNP G G A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 214487150 214487150 USH2A 1 G G A 39 AAMP 14 genome.wustl.edu 36 2 218839034 218839034 + Nonsense_Mutation SNP T T A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 218839034 218839034 AAMP 2 T T A 62 COL4A4 1286 genome.wustl.edu 36 2 227633177 227633177 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 227633177 227633177 COL4A4 2 C C A 24 ZNF496 84838 genome.wustl.edu 36 1 245531178 245531178 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 245531178 245531178 ZNF496 1 C C G 32 TP53 7157 genome.wustl.edu 36 17 7519195 7519225 + Frame_Shift_Del DEL CGGGCGGGGGTGTGGAATCAACCCACAGCTG CGGGCGGGGGTGTGGAATCAACCCACAGCTG - novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 CGGGCGGGGGTGTGGAATCAACCCACAGCTG CGGGCGGGGGTGTGGAATCAACCCACAGCTG CGGGCGGGGGTGTGGAATCAACCCACAGCTG - CGGGCGGGGGTGTGGAATCAACCCACAGCTG CGGGCGGGGGTGTGGAATCAACCCACAGCTG Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 7519195 7519225 TP53 17 CGGGCGGGGGTGTGGAATCAACCCACAGCTG CGGGCGGGGGTGTGGAATCAACCCACAGCTG - 23 N4BP2L2 10443 genome.wustl.edu 36 13 31914881 31914893 + Frame_Shift_Del DEL AAAGAAGGAATAT AAAGAAGGAATAT - novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 AAAGAAGGAATAT AAAGAAGGAATAT AAAGAAGGAATAT - AAAGAAGGAATAT AAAGAAGGAATAT Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 31914881 31914893 N4BP2L2 13 AAAGAAGGAATAT AAAGAAGGAATAT - 1 LOC441228 441228 genome.wustl.edu 36 7 56325666 56325679 + Frame_Shift_Del DEL TCTCTAGCAGACTG TCTCTAGCAGACTG - novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 TCTCTAGCAGACTG TCTCTAGCAGACTG TCTCTAGCAGACTG - TCTCTAGCAGACTG TCTCTAGCAGACTG Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 56325666 56325679 LOC441228 7 TCTCTAGCAGACTG TCTCTAGCAGACTG - 54 LRP2 4036 genome.wustl.edu 36 2 169742768 169742768 + Missense_Mutation SNP T C T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 T T C T T T Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx WashU Missense_Mutation SNP 169742768 169742768 LRP2 2 T C T 54 DCLK2 166614 genome.wustl.edu 36 4 151388206 151388206 + Missense_Mutation SNP G A G novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G A G G G Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx WashU Missense_Mutation SNP 151388206 151388206 DCLK2 4 G A G 45 PRAMEF20 genome.wustl.edu 36 1 13615538 13615538 + Missense_Mutation SNP G C C novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G C C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 13615538 13615538 PRAMEF20 1 G C C 33 C10orf68 79741 genome.wustl.edu 36 10 33040622 33040622 + Nonsense_Mutation SNP C C T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 33040622 33040622 C10orf68 10 C C T 25 TMEM132D 121256 genome.wustl.edu 36 12 128750475 128750475 + Silent SNP G A A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 128750475 128750475 TMEM132D 12 G A A 37 ANPEP 290 genome.wustl.edu 36 15 88150390 88150390 + Silent SNP T T C novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 88150390 88150390 ANPEP 15 T T C 54 SERPINB11 89778 genome.wustl.edu 36 18 59541552 59541552 + Missense_Mutation SNP T T A novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 59541552 59541552 SERPINB11 18 T T A 62 TTN 7273 genome.wustl.edu 36 2 179350261 179350261 + Missense_Mutation SNP A A C Unknown TCGA-23-1117-01 TCGA-23-1117-10 A A A C A A Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 179350261 179350261 TTN 2 A A C 5 CPN2 1370 genome.wustl.edu 36 3 195544164 195544164 + Silent SNP T T C novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 195544164 195544164 CPN2 3 T T C 51 SEMA6A 57556 genome.wustl.edu 36 5 115855347 115855347 + Missense_Mutation SNP C C T Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C T C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 115855347 115855347 SEMA6A 5 C C T 25 C6orf182 285753 genome.wustl.edu 36 6 109587359 109587359 + Splice_Site_SNP SNP G G A Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G A G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 109587359 109587359 C6orf182 6 G G A 48 HIST1H2BD 3017 genome.wustl.edu 36 6 26266730 26266730 + Silent SNP C C G Unknown TCGA-23-1117-01 TCGA-23-1117-10 C C C G C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 26266730 26266730 HIST1H2BD 6 C C G 23 FLNC 2318 genome.wustl.edu 36 7 128271524 128271524 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 128271524 128271524 FLNC 7 G G T 48 IZUMO1 284359 genome.wustl.edu 36 19 53936883 53936883 + Silent SNP G G C Unknown TCGA-23-1117-01 TCGA-23-1117-10 G G G C G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 53936883 53936883 IZUMO1 19 G G C 47 IL1RAPL1 11141 genome.wustl.edu 36 X 29848010 29848010 + Missense_Mutation SNP A A C Unknown TCGA-23-1117-01 TCGA-23-1117-10 A A A C A A Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 29848010 29848010 IL1RAPL1 23 A A C 9