Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context C20orf54 113278 genome.wustl.edu 36 20 693986 693986 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 693986 693986 C20orf54 20 C C G 29 YES1 7525 genome.wustl.edu 36 18 714573 714573 + Nonsense_Mutation SNP G G A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 714573 714573 YES1 18 G G A 45 SLC6A3 6531 genome.wustl.edu 36 5 1494479 1494479 + Missense_Mutation SNP A A C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 1494479 1494479 SLC6A3 5 A A C 7 TLE6 79816 genome.wustl.edu 36 19 2942957 2942957 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 2942957 2942957 TLE6 19 C C A 24 ZNF263 10127 genome.wustl.edu 36 16 3274005 3274005 + Silent SNP C C T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 3274005 3274005 ZNF263 16 C C T 30 TRPV3 162514 genome.wustl.edu 36 17 3374306 3374306 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 3374306 3374306 TRPV3 17 G G A 38 OR51B2 79345 genome.wustl.edu 36 11 5301582 5301582 + Silent SNP A A C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 5301582 5301582 OR51B2 11 A A C 6 OR52H1 390067 genome.wustl.edu 36 11 5523114 5523114 + Silent SNP G G C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 5523114 5523114 OR52H1 11 G G C 47 LRRC23 10233 genome.wustl.edu 36 12 6893455 6893455 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 6893455 6893455 LRRC23 12 C C T 26 TP53 7157 genome.wustl.edu 36 17 7519188 7519188 + Missense_Mutation SNP C G G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C G G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7519188 7519188 TP53 17 C G G 27 CD163 9332 genome.wustl.edu 36 12 7542786 7542786 + Missense_Mutation SNP T T A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7542786 7542786 CD163 12 T T A 56 USP7 7874 genome.wustl.edu 36 16 8931755 8931755 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 8931755 8931755 USP7 16 G G C 38 SWAP70 23075 genome.wustl.edu 36 11 9702956 9702956 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 9702956 9702956 SWAP70 11 C C A 32 TAS2R8 50836 genome.wustl.edu 36 12 10850410 10850410 + Missense_Mutation SNP A A T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 10850410 10850410 TAS2R8 12 A A T 3 HERV-FRD 405754 genome.wustl.edu 36 6 11212762 11212762 + Silent SNP G G C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 11212762 11212762 HERV-FRD 6 G G C 33 SYN2 6854 genome.wustl.edu 36 3 12186352 12186352 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 12186352 12186352 SYN2 3 G G T 48 PRAMEF12 390999 genome.wustl.edu 36 1 12757692 12757692 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 12757692 12757692 PRAMEF12 1 C C G 22 DGKB 1607 genome.wustl.edu 36 7 14700296 14700296 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 14700296 14700296 DGKB 7 C C T 19 MYH11 4629 genome.wustl.edu 36 16 15748982 15748982 + Missense_Mutation SNP A A G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 15748982 15748982 MYH11 16 A A G 12 NWD1 284434 genome.wustl.edu 36 19 16721175 16721175 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 16721175 16721175 NWD1 19 C C G 18 PLCZ1 89869 genome.wustl.edu 36 12 18727493 18727493 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 18727493 18727493 PLCZ1 12 C C A 22 PBX4 80714 genome.wustl.edu 36 19 19536835 19536835 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19536835 19536835 PBX4 19 C C G 32 ZNF14 7561 genome.wustl.edu 36 19 19684201 19684201 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19684201 19684201 ZNF14 19 G G A 46 OR11H4 390442 genome.wustl.edu 36 14 19781045 19781045 + Silent SNP C C T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 19781045 19781045 OR11H4 14 C C T 24 SDC1 6382 genome.wustl.edu 36 2 20268626 20268626 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20268626 20268626 SDC1 2 C C G 26 CYFIP1 23191 genome.wustl.edu 36 15 20520687 20520687 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20520687 20520687 CYFIP1 15 G G A 48 ENSG00000214873 genome.wustl.edu 36 16 21451902 21451902 + Silent SNP T T G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 21451902 21451902 ENSG00000214873 16 T T G 51 RAP1GAP 5909 genome.wustl.edu 36 1 21850624 21850624 + Silent SNP C C T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 21850624 21850624 RAP1GAP 1 C C T 17 PPP3CC 5533 genome.wustl.edu 36 8 22436177 22436177 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 22436177 22436177 PPP3CC 8 C C T 22 ATAD2B 54454 genome.wustl.edu 36 2 23834265 23834265 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 23834265 23834265 ATAD2B 2 G G C 33 PRKCB 5579 genome.wustl.edu 36 16 24138795 24138795 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 24138795 24138795 PRKCB 16 G G A 33 SLC5A11 115584 genome.wustl.edu 36 16 24809842 24809842 + Silent SNP G G T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 24809842 24809842 SLC5A11 16 G G T 39 GINS1 9837 genome.wustl.edu 36 20 25353913 25353913 + Missense_Mutation SNP G C C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G C C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 25353913 25353913 GINS1 20 G C C 35 SF3A1 10291 genome.wustl.edu 36 22 29065183 29065183 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 29065183 29065183 SF3A1 22 C C A 18 RBPMS 11030 genome.wustl.edu 36 8 30451842 30451842 + Silent SNP G G C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 30451842 30451842 RBPMS 8 G G C 41 RXRB 6257 genome.wustl.edu 36 6 33273583 33273583 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 33273583 33273583 RXRB 6 G G A 38 MYADML 151325 genome.wustl.edu 36 2 33805641 33805641 + Missense_Mutation SNP A A T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 33805641 33805641 MYADML 2 A A T 14 UBAP2 55833 genome.wustl.edu 36 9 33925776 33925776 + Missense_Mutation SNP A A G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 33925776 33925776 UBAP2 9 A A G 16 C9orf24 84688 genome.wustl.edu 36 9 34372763 34372763 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 34372763 34372763 C9orf24 9 G G A 37 TTC3 7267 genome.wustl.edu 36 21 37459747 37459747 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 37459747 37459747 TTC3 21 C C G 17 PLA2G4F 255189 genome.wustl.edu 36 15 40223586 40223586 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 40223586 40223586 PLA2G4F 15 C C G 25 FAM187B 148109 genome.wustl.edu 36 19 40411274 40411274 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 40411274 40411274 FAM187B 19 G G T 36 MGC42105 167359 genome.wustl.edu 36 5 43316288 43316288 + Silent SNP C C T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 43316288 43316288 MGC42105 5 C C T 30 POLM 27434 genome.wustl.edu 36 7 44087037 44087037 + Silent SNP G G A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 44087037 44087037 POLM 7 G G A 39 CPB2 1361 genome.wustl.edu 36 13 45525782 45525782 + Missense_Mutation SNP T T G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 45525782 45525782 CPB2 13 T T G 61 XCR1 2829 genome.wustl.edu 36 3 46037724 46037724 + Silent SNP G G A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 46037724 46037724 XCR1 3 G G A 35 CEACAM21 90273 genome.wustl.edu 36 19 46777611 46777611 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 46777611 46777611 CEACAM21 19 C C A 24 TNS3 64759 genome.wustl.edu 36 7 47406910 47406910 + Missense_Mutation SNP T T G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 47406910 47406910 TNS3 7 T T G 63 AGBL2 79841 genome.wustl.edu 36 11 47638436 47638436 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 47638436 47638436 AGBL2 11 C C G 32 LOC120824 120824 genome.wustl.edu 36 11 48953697 48953697 + Silent SNP G G A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 48953697 48953697 LOC120824 11 G G A 35 DMXL2 23312 genome.wustl.edu 36 15 49582396 49582396 + Missense_Mutation SNP A A G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 49582396 49582396 DMXL2 15 A A G 3 BSN 8927 genome.wustl.edu 36 3 49674953 49674953 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 49674953 49674953 BSN 3 G G T 35 UBA7 7318 genome.wustl.edu 36 3 49822752 49822752 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 49822752 49822752 UBA7 3 G G T 36 RPGRIP1L 23322 genome.wustl.edu 36 16 52283700 52283700 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 52283700 52283700 RPGRIP1L 16 C C A 30 LRRC1 55227 genome.wustl.edu 36 6 53851816 53851816 + Missense_Mutation SNP A A T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 53851816 53851816 LRRC1 6 A A T 2 C17orf71 55181 genome.wustl.edu 36 17 54643790 54643790 + Silent SNP T T C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 54643790 54643790 C17orf71 17 T T C 62 IKZF4 64375 genome.wustl.edu 36 12 54703778 54703778 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 54703778 54703778 IKZF4 12 C C A 20 GLS2 27165 genome.wustl.edu 36 12 55151826 55151826 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55151826 55151826 GLS2 12 G G T 48 OTX2 5015 genome.wustl.edu 36 14 56338774 56338774 + Missense_Mutation SNP T T G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 56338774 56338774 OTX2 14 T T G 55 USP34 9736 genome.wustl.edu 36 2 61375885 61375885 + Silent SNP G G A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 61375885 61375885 USP34 2 G G A 38 PLEKHO2 80301 genome.wustl.edu 36 15 62944873 62944873 + Silent SNP C A A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C A A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 62944873 62944873 PLEKHO2 15 C A A 24 WIF1 11197 genome.wustl.edu 36 12 63731445 63731445 + Missense_Mutation SNP T T C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 63731445 63731445 WIF1 12 T T C 64 ADAMTS6 11174 genome.wustl.edu 36 5 64546443 64546443 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 64546443 64546443 ADAMTS6 5 C C G 32 TM7SF2 7108 genome.wustl.edu 36 11 64637637 64637637 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 64637637 64637637 TM7SF2 11 G G C 39 GRIP1 23426 genome.wustl.edu 36 12 65143104 65143104 + Silent SNP G G T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 65143104 65143104 GRIP1 12 G G T 47 LOC643827 genome.wustl.edu 36 9 65334887 65334887 + Splice_Site_SNP SNP G G A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 65334887 65334887 LOC643827 9 G G A 34 CDH16 1014 genome.wustl.edu 36 16 65504166 65504166 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 65504166 65504166 CDH16 16 G G C 43 TRIM55 84675 genome.wustl.edu 36 8 67202171 67202171 + Silent SNP G G A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 67202171 67202171 TRIM55 8 G G A 45 PROKR1 10887 genome.wustl.edu 36 2 68736025 68736025 + Missense_Mutation SNP T T G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 68736025 68736025 PROKR1 2 T T G 51 UACA 55075 genome.wustl.edu 36 15 68746196 68746196 + Missense_Mutation SNP T T C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 68746196 68746196 UACA 15 T T C 50 XKR9 389668 genome.wustl.edu 36 8 71809051 71809051 + Silent SNP T T C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 71809051 71809051 XKR9 8 T T C 53 MFSD11 79157 genome.wustl.edu 36 17 72285944 72285944 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 72285944 72285944 MFSD11 17 G G T 43 CYP11A1 1583 genome.wustl.edu 36 15 72418703 72418703 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 72418703 72418703 CYP11A1 15 G G T 44 SEC14L1 6397 genome.wustl.edu 36 17 72717130 72717130 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 72717130 72717130 SEC14L1 17 G G A 40 MPI 4351 genome.wustl.edu 36 15 72975669 72975669 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 72975669 72975669 MPI 15 G G T 43 KLF12 11278 genome.wustl.edu 36 13 73187530 73187530 + Missense_Mutation SNP T T C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 73187530 73187530 KLF12 13 T T C 62 GTF2IRD2 84163 genome.wustl.edu 36 7 73849400 73849400 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 73849400 73849400 GTF2IRD2 7 G G C 36 SLC4A5 57835 genome.wustl.edu 36 2 74344848 74344848 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 74344848 74344848 SLC4A5 2 G G A 39 MYCBP2 23077 genome.wustl.edu 36 13 76527820 76527820 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 76527820 76527820 MYCBP2 13 C C G 29 NAV3 89795 genome.wustl.edu 36 12 77106243 77106243 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 77106243 77106243 NAV3 12 C C T 19 LPAR4 2846 genome.wustl.edu 36 X 77897941 77897941 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 77897941 77897941 LPAR4 23 G G C 45 USP33 23032 genome.wustl.edu 36 1 77952922 77952922 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 77952922 77952922 USP33 1 G G C 35 POU4F1 5457 genome.wustl.edu 36 13 78073769 78073769 + Missense_Mutation SNP C G G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C G G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 78073769 78073769 POU4F1 13 C G G 29 BHMT 635 genome.wustl.edu 36 5 78459541 78459541 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 78459541 78459541 BHMT 5 C C G 18 MBTPS1 8720 genome.wustl.edu 36 16 82684840 82684840 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 82684840 82684840 MBTPS1 16 G G T 44 AKAP13 11214 genome.wustl.edu 36 15 84029056 84029056 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 84029056 84029056 AKAP13 15 G G T 36 SPP1 6696 genome.wustl.edu 36 4 89122812 89122812 + Missense_Mutation SNP C C A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 89122812 89122812 SPP1 4 C C A 29 GPR98 84059 genome.wustl.edu 36 5 90025600 90025600 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 90025600 90025600 GPR98 5 G G A 33 ZNF326 284695 genome.wustl.edu 36 1 90255585 90255585 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 90255585 90255585 ZNF326 1 G G T 45 CCDC88C 440193 genome.wustl.edu 36 14 90849506 90849506 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 90849506 90849506 CCDC88C 14 G G C 35 DDX24 57062 genome.wustl.edu 36 14 93598574 93598574 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 93598574 93598574 DDX24 14 C C G 24 FOLR4 genome.wustl.edu 36 11 93680014 93680014 + Missense_Mutation SNP T T A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 93680014 93680014 FOLR4 11 T T A 51 HHEX 3087 genome.wustl.edu 36 10 94444440 94444440 + Missense_Mutation SNP A A G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 94444440 94444440 HHEX 10 A A G 12 DYNC1I1 1780 genome.wustl.edu 36 7 95543440 95543440 + Missense_Mutation SNP A A C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 95543440 95543440 DYNC1I1 7 A A C 6 BDKRB2 624 genome.wustl.edu 36 14 95777499 95777499 + Missense_Mutation SNP A A T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 95777499 95777499 BDKRB2 14 A A T 8 CYP2C9 1559 genome.wustl.edu 36 10 96738634 96738634 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 96738634 96738634 CYP2C9 10 G G C 34 SYNM 23336 genome.wustl.edu 36 15 97490006 97490006 + Missense_Mutation SNP A A G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 97490006 97490006 SYNM 15 A A G 8 AMY2A 279 genome.wustl.edu 36 1 103968324 103968324 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 103968324 103968324 AMY2A 1 G G T 43 C10orf79 80217 genome.wustl.edu 36 10 105942019 105942019 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 105942019 105942019 C10orf79 10 C C T 21 STXBP3 6814 genome.wustl.edu 36 1 109116808 109116808 + Splice_Site_SNP SNP A A T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 109116808 109116808 STXBP3 1 A A T 15 SLC9A10 285335 genome.wustl.edu 36 3 113382131 113382131 + Silent SNP T T C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 113382131 113382131 SLC9A10 3 T T C 62 C10orf96 374355 genome.wustl.edu 36 10 118106897 118106897 + Missense_Mutation SNP A A G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 118106897 118106897 C10orf96 10 A A G 9 NOV 4856 genome.wustl.edu 36 8 120499691 120499691 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 120499691 120499691 NOV 8 C C G 22 C3orf1 51300 genome.wustl.edu 36 3 120702256 120702256 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 120702256 120702256 C3orf1 3 C C G 18 MLXIP 22877 genome.wustl.edu 36 12 121189425 121189425 + Nonsense_Mutation SNP G G T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 121189425 121189425 MLXIP 12 G G T 47 GOLGA2 2801 genome.wustl.edu 36 9 130062777 130062777 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 130062777 130062777 GOLGA2 9 C C T 32 ENPP1 5167 genome.wustl.edu 36 6 132253282 132253282 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 132253282 132253282 ENPP1 6 G G C 33 NCAPD3 23310 genome.wustl.edu 36 11 133533032 133533032 + Splice_Site_SNP SNP C C A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 133533032 133533032 NCAPD3 11 C C A 18 MOSPD1 56180 genome.wustl.edu 36 X 133861042 133861042 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 133861042 133861042 MOSPD1 23 C C T 29 C3orf36 80111 genome.wustl.edu 36 3 135130178 135130178 + Silent SNP T T G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 135130178 135130178 C3orf36 3 T T G 55 LECT2 3950 genome.wustl.edu 36 5 135314874 135314874 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 135314874 135314874 LECT2 5 C C G 22 KIAA1984 84960 genome.wustl.edu 36 9 138816969 138816969 + Missense_Mutation SNP G C C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G C C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 138816969 138816969 KIAA1984 9 G C C 34 JHDM1D 80853 genome.wustl.edu 36 7 139443277 139443277 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 139443277 139443277 JHDM1D 7 C C T 29 MKRN1 23608 genome.wustl.edu 36 7 139801397 139801397 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 139801397 139801397 MKRN1 7 C C G 32 PCDHGA1 56114 genome.wustl.edu 36 5 140692346 140692346 + Silent SNP G G A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 140692346 140692346 PCDHGA1 5 G G A 38 ACP6 51205 genome.wustl.edu 36 1 145598404 145598404 + Silent SNP G G A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 145598404 145598404 ACP6 1 G G A 44 ZNF16 7564 genome.wustl.edu 36 8 146127343 146127343 + Missense_Mutation SNP T T C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 146127343 146127343 ZNF16 8 T T C 49 CA14 23632 genome.wustl.edu 36 1 148501180 148501180 + Splice_Site_SNP SNP G G A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 148501180 148501180 CA14 1 G G A 36 POGZ 23126 genome.wustl.edu 36 1 149667379 149667379 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 149667379 149667379 POGZ 1 G G C 33 ARFIP1 27236 genome.wustl.edu 36 4 154028823 154028823 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 154028823 154028823 ARFIP1 4 C C G 17 HTR5A 3361 genome.wustl.edu 36 7 154506945 154506945 + Missense_Mutation SNP T T G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 154506945 154506945 HTR5A 7 T T G 55 GPR149 344758 genome.wustl.edu 36 3 155629513 155629513 + Missense_Mutation SNP T T C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 155629513 155629513 GPR149 3 T T C 49 DUSP27 92235 genome.wustl.edu 36 1 165363883 165363883 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 165363883 165363883 DUSP27 1 G G A 33 SLC38A11 151258 genome.wustl.edu 36 2 165504213 165504213 + Missense_Mutation SNP A A T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 165504213 165504213 SLC38A11 2 A A T 3 WWC1 23286 genome.wustl.edu 36 5 167827458 167827458 + Silent SNP G G A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 167827458 167827458 WWC1 5 G G A 33 PALLD 23022 genome.wustl.edu 36 4 170061530 170061530 + Silent SNP C C T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 170061530 170061530 PALLD 4 C C T 20 CDCA7 83879 genome.wustl.edu 36 2 173938520 173938520 + Missense_Mutation SNP A A G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 173938520 173938520 CDCA7 2 A A G 11 MGAT1 4245 genome.wustl.edu 36 5 180152019 180152019 + Missense_Mutation SNP G A A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 180152019 180152019 MGAT1 5 G A A 38 FRZB 2487 genome.wustl.edu 36 2 183439182 183439182 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 183439182 183439182 FRZB 2 G G T 42 MASP1 5648 genome.wustl.edu 36 3 188436814 188436814 + Silent SNP C C T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 188436814 188436814 MASP1 3 C C T 24 TFRC 7037 genome.wustl.edu 36 3 197283391 197283391 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 197283391 197283391 TFRC 3 C C T 19 CPS1 1373 genome.wustl.edu 36 2 211185234 211185234 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 211185234 211185234 CPS1 2 G G C 34 UGT1A8 54576 genome.wustl.edu 36 2 234191249 234191249 + Missense_Mutation SNP C C T rs45504099 byFrequency TCGA-23-1124-01 TCGA-23-1124-10 C C C T C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx WashU Missense_Mutation SNP 234191249 234191249 UGT1A8 2 C C T 25 BMP2K 55589 genome.wustl.edu 36 4 80005746 80005746 + Missense_Mutation SNP C G C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C G C C C Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx WashU Missense_Mutation SNP 80005746 80005746 BMP2K 4 C G C 18 PTPRF 5792 genome.wustl.edu 36 1 43842098 43842098 + Missense_Mutation SNP C C G Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C G C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 43842098 43842098 PTPRF 1 C C G 18 CRTAC1 55118 genome.wustl.edu 36 10 99633985 99633985 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 99633985 99633985 CRTAC1 10 C C T 29 PLCB3 5331 genome.wustl.edu 36 11 63786536 63786536 + Missense_Mutation SNP G G A Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 63786536 63786536 PLCB3 11 G G A 39 COL2A1 1280 genome.wustl.edu 36 12 46672951 46672951 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 46672951 46672951 COL2A1 12 G G A 40 IGHD genome.wustl.edu 36 14 105377897 105377897 + Missense_Mutation SNP G G A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 105377897 105377897 IGHD 14 G G A 35 NDNL2 56160 genome.wustl.edu 36 15 27348490 27348491 + Missense DNP TC TC AT novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense DNP 27348490 27348491 NDNL2 15 TC TC AT 50 SPATA8 145946 genome.wustl.edu 36 15 95129238 95129238 + Missense_Mutation SNP T T C Unknown TCGA-23-1124-01 TCGA-23-1124-10 T T T C T T Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 95129238 95129238 SPATA8 15 T T C 55 FMNL2 114793 genome.wustl.edu 36 2 153125679 153125679 + Silent SNP C C T Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C T C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 153125679 153125679 FMNL2 2 C C T 28 SLC4A5 57835 genome.wustl.edu 36 2 74385307 74385307 + Missense_Mutation SNP G G T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 74385307 74385307 SLC4A5 2 G G T 41 LOC391282 391282 genome.wustl.edu 36 21 39421767 39421767 + Silent SNP G G A novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 39421767 39421767 LOC391282 21 G G A 33 DSCAM 1826 genome.wustl.edu 36 21 40345871 40345871 + Missense_Mutation SNP T T G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 40345871 40345871 DSCAM 21 T T G 58 KDELR3 11015 genome.wustl.edu 36 22 37207391 37207392 + Missense DNP TT TT GA novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense DNP 37207391 37207392 KDELR3 22 TT TT GA 56 LRPAP1 4043 genome.wustl.edu 36 4 3489580 3489580 + Missense_Mutation SNP G G T Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G T G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 3489580 3489580 LRPAP1 4 G G T 47 AKD1 221264 genome.wustl.edu 36 6 109961219 109961219 + Silent SNP T T C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 109961219 109961219 AKD1 6 T T C 64 TRERF1 55809 genome.wustl.edu 36 6 42304171 42304171 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 42304171 42304171 TRERF1 6 C C T 31 TRERF1 55809 genome.wustl.edu 36 6 42304174 42304174 + Missense_Mutation SNP C C T novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 42304174 42304174 TRERF1 6 C C T 31 GPR146 115330 genome.wustl.edu 36 7 1064417 1064417 + Missense_Mutation SNP C C G novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 1064417 1064417 GPR146 7 C C G 19 AKAP9 10142 genome.wustl.edu 36 7 91479846 91479846 + Missense_Mutation SNP G G C novel Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 91479846 91479846 AKAP9 7 G G C 33 XIRP2 129446 genome.wustl.edu 36 2 167808566 167808582 + Frame_Shift_Del DEL TAAGGCAAAGTGGTTAT TAAGGCAAAGTGGTTAT - Unknown TCGA-23-1124-01 TCGA-23-1124-10 TAAGGCAAAGTGGTTAT TAAGGCAAAGTGGTTAT TAAGGCAAAGTGGTTAT - TAAGGCAAAGTGGTTAT TAAGGCAAAGTGGTTAT Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 167808566 167808582 XIRP2 2 TAAGGCAAAGTGGTTAT TAAGGCAAAGTGGTTAT - 57 CSF3 1440 genome.wustl.edu 36 17 35425469 35425469 + Splice_Site_SNP SNP G G A Unknown TCGA-23-1124-01 TCGA-23-1124-10 G G G A G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 35425469 35425469 CSF3 17 G G A 34 OTOP2 92736 genome.wustl.edu 36 17 70438415 70438415 + Missense_Mutation SNP A A G Unknown TCGA-23-1124-01 TCGA-23-1124-10 A A A G A A Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 70438415 70438415 OTOP2 17 A A G 6