Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context MYOM2 9172 genome.wustl.edu 36 8 2044699 2044699 + Silent SNP T T C novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 2044699 2044699 MYOM2 8 T T C 61 KCNA5 3741 genome.wustl.edu 36 12 5024132 5024132 + Silent SNP G G A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 5024132 5024132 KCNA5 12 G G A 41 TP53 7157 genome.wustl.edu 36 17 7518264 7518264 + Missense_Mutation SNP G G A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7518264 7518264 TP53 17 G G A 39 TUB 7275 genome.wustl.edu 36 11 8079097 8079097 + Missense_Mutation SNP T T A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 8079097 8079097 TUB 11 T T A 62 BOD1L 259282 genome.wustl.edu 36 4 13221714 13221714 + Missense_Mutation SNP G G A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 13221714 13221714 BOD1L 4 G G A 45 POTEH 23784 genome.wustl.edu 36 22 14667661 14667661 + Silent SNP G G A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 14667661 14667661 POTEH 22 G G A 38 PADI2 11240 genome.wustl.edu 36 1 17274006 17274006 + Missense_Mutation SNP G G A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 17274006 17274006 PADI2 1 G G A 44 SLIT2 9353 genome.wustl.edu 36 4 20102532 20102532 + Missense_Mutation SNP G G A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20102532 20102532 SLIT2 4 G G A 38 LOC649264 649264 genome.wustl.edu 36 22 22042642 22042642 + Missense_Mutation SNP G G A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 22042642 22042642 LOC649264 22 G G A 33 LOC645904 645904 genome.wustl.edu 36 22 22132596 22132596 + Silent SNP C C T novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 22132596 22132596 LOC645904 22 C C T 23 WNT4 54361 genome.wustl.edu 36 1 22326371 22326371 + Silent SNP G G A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 22326371 22326371 WNT4 1 G G A 39 SLC17A6 57084 genome.wustl.edu 36 11 22354787 22354787 + Missense_Mutation SNP A A G novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 22354787 22354787 SLC17A6 11 A A G 3 PSMB5 5693 genome.wustl.edu 36 14 22573899 22573899 + Missense_Mutation SNP A A T novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 22573899 22573899 PSMB5 14 A A T 15 ZKSCAN2 342357 genome.wustl.edu 36 16 25174196 25174196 + Missense_Mutation SNP G G C novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 25174196 25174196 ZKSCAN2 16 G G C 39 COL16A1 1307 genome.wustl.edu 36 1 31936097 31936097 + Silent SNP G G C novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 31936097 31936097 COL16A1 1 G G C 33 ADAMTS12 81792 genome.wustl.edu 36 5 33651729 33651729 + Silent SNP C C G novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 33651729 33651729 ADAMTS12 5 C C G 29 DUOXA1 90527 genome.wustl.edu 36 15 43197528 43197528 + Silent SNP C C T novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 43197528 43197528 DUOXA1 15 C C T 23 CDH22 64405 genome.wustl.edu 36 20 44248970 44248970 + Missense_Mutation SNP C C T novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 44248970 44248970 CDH22 20 C C T 26 SLC35C2 51006 genome.wustl.edu 36 20 44417897 44417897 + Missense_Mutation SNP G G A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 44417897 44417897 SLC35C2 20 G G A 34 TP53I11 9537 genome.wustl.edu 36 11 44913053 44913053 + Missense_Mutation SNP A A C novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 44913053 44913053 TP53I11 11 A A C 1 SMC1A 8243 genome.wustl.edu 36 X 53449317 53449317 + Missense_Mutation SNP C C A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 53449317 53449317 SMC1A 23 C C A 32 CBLN4 140689 genome.wustl.edu 36 20 54012421 54012421 + Missense_Mutation SNP C T T novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 54012421 54012421 CBLN4 20 C T T 27 MBL2 4153 genome.wustl.edu 36 10 54201258 54201258 + Silent SNP G G T novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 54201258 54201258 MBL2 10 G G T 46 DLGAP5 9787 genome.wustl.edu 36 14 54712398 54712398 + Missense_Mutation SNP A A C novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 54712398 54712398 DLGAP5 14 A A C 8 LOC729621 729621 genome.wustl.edu 36 17 56159371 56159371 + Silent SNP C C T novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 56159371 56159371 LOC729621 17 C C T 32 AQP7P1 375719 genome.wustl.edu 36 9 66961990 66961990 + Silent SNP G G A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G G A G A Unknown Valid Germline 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 66961990 66961990 AQP7P1 9 G G A 39 GLCE 26035 genome.wustl.edu 36 15 67348201 67348201 + Missense_Mutation SNP C C T novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 67348201 67348201 GLCE 15 C C T 25 AUTS2 26053 genome.wustl.edu 36 7 69867749 69867749 + Silent SNP G G A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 69867749 69867749 AUTS2 7 G G A 40 SCAMP5 192683 genome.wustl.edu 36 15 73096050 73096050 + Missense_Mutation SNP G G A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 73096050 73096050 SCAMP5 15 G G A 41 CCDC40 55036 genome.wustl.edu 36 17 75676068 75676068 + Silent SNP C C T novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 75676068 75676068 CCDC40 17 C C T 18 IL17C 27189 genome.wustl.edu 36 16 87233863 87233863 + Missense_Mutation SNP G A A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G A A G A Unknown Valid LOH 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 87233863 87233863 IL17C 16 G A A 38 IARS 3376 genome.wustl.edu 36 9 94052860 94052860 + Missense_Mutation SNP G G C novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 94052860 94052860 IARS 9 G G C 48 KRT18P50 442236 genome.wustl.edu 36 6 96546774 96546774 + Missense_Mutation SNP G A A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G A A G A Unknown Valid LOH 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 96546774 96546774 KRT18P50 6 G A A 39 WASH2P 375260 genome.wustl.edu 36 15 100332870 100332870 + Missense_Mutation SNP C C A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 100332870 100332870 WASH2P 15 C C A 25 CLDN15 24146 genome.wustl.edu 36 7 100664359 100664359 + Missense_Mutation SNP C C T novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 100664359 100664359 CLDN15 7 C C T 27 LOC653354 653354 genome.wustl.edu 36 X 100739353 100739353 + Nonsense_Mutation SNP T T A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 100739353 100739353 LOC653354 23 T T A 61 POLR2J3 548644 genome.wustl.edu 36 7 101997426 101997426 + Missense_Mutation SNP C C G novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 101997426 101997426 POLR2J3 7 C C G 29 MYO16 23026 genome.wustl.edu 36 13 108116425 108116425 + Silent SNP G G A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 108116425 108116425 MYO16 13 G G A 37 SYBU 55638 genome.wustl.edu 36 8 110656324 110656324 + Missense_Mutation SNP C C T novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 110656324 110656324 SYBU 8 C C T 19 LRIG2 9860 genome.wustl.edu 36 1 113458810 113458810 + Silent SNP G G A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 113458810 113458810 LRIG2 1 G G A 41 SIDT1 54847 genome.wustl.edu 36 3 114769133 114769133 + Missense_Mutation SNP C C T novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 114769133 114769133 SIDT1 3 C C T 25 STXBP5L 9515 genome.wustl.edu 36 3 122456552 122456552 + Missense_Mutation SNP A A G novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 122456552 122456552 STXBP5L 3 A A G 14 FAM83A 84985 genome.wustl.edu 36 8 124264735 124264735 + Missense_Mutation SNP G G A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 124264735 124264735 FAM83A 8 G G A 38 FBN2 2201 genome.wustl.edu 36 5 127709144 127709144 + Missense_Mutation SNP C C A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 127709144 127709144 FBN2 5 C C A 22 DOCK1 1793 genome.wustl.edu 36 10 129062457 129062457 + Missense_Mutation SNP G G A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 129062457 129062457 DOCK1 10 G G A 40 DNM1 1759 genome.wustl.edu 36 9 130048595 130048595 + Silent SNP G G A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 130048595 130048595 DNM1 9 G G A 39 PPP2R2B 5521 genome.wustl.edu 36 5 145949851 145949851 + Missense_Mutation SNP A A C novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 145949851 145949851 PPP2R2B 5 A A C 6 ZNF16 7564 genome.wustl.edu 36 8 146128591 146128591 + Missense_Mutation SNP G G T novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 146128591 146128591 ZNF16 8 G G T 41 FGB 2244 genome.wustl.edu 36 4 155711191 155711191 + Missense_Mutation SNP G G A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 155711191 155711191 FGB 4 G G A 43 DNAJB6 10049 genome.wustl.edu 36 7 156870413 156870413 + Silent SNP G G A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 156870413 156870413 DNAJB6 7 G G A 37 PDE11A 50940 genome.wustl.edu 36 2 178644726 178644726 + Missense_Mutation SNP C C T novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 178644726 178644726 PDE11A 2 C C T 17 RGS21 431704 genome.wustl.edu 36 1 190583138 190583138 + Missense_Mutation SNP C C A novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 190583138 190583138 RGS21 1 C C A 18 SPAG16 79582 genome.wustl.edu 36 2 213937101 213937101 + Silent SNP T T C novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 213937101 213937101 SPAG16 2 T T C 58 ENSG00000215548 genome.wustl.edu 36 20 28226046 28226046 + Missense_Mutation SNP A C C novel Unknown TCGA-24-0982-01 TCGA-24-0982-10 A A C C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 28226046 28226046 ENSG00000215548 20 A C C 7 BLVRA 644 genome.wustl.edu 36 7 43813141 43813141 + Nonsense_Mutation SNP C C T Unknown TCGA-24-0982-01 TCGA-24-0982-10 C C C T C C Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 43813141 43813141 BLVRA 7 C C T 19 POSTN 10631 genome.wustl.edu 36 13 37036662 37036663 + Frame_Shift_Ins INS - - T Unknown TCGA-24-0982-01 TCGA-24-0982-10 - - - T - - Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Ins INS 37036662 37036663 POSTN 13 - - T 20 L3MBTL2 83746 genome.wustl.edu 36 22 39935678 39935679 + Missense DNP GG GG AA Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G G A G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense DNP 39935678 39935679 L3MBTL2 22 GG GG AA 35 L3MBTL2 83746 genome.wustl.edu 36 22 39935693 39935693 + Silent SNP G G A Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G G A G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 39935693 39935693 L3MBTL2 22 G G A 47 L3MBTL2 83746 genome.wustl.edu 36 22 39935707 39935707 + Missense_Mutation SNP G G A Unknown TCGA-24-0982-01 TCGA-24-0982-10 G G G A G G Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 39935707 39935707 L3MBTL2 22 G G A 42