Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
TMC2	117532	genome.wustl.edu	36	20	2541940	2541940	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1416-01	TCGA-24-1416-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	2541940	2541940	TMC2	20	G	G	A	46
TP53	7157	genome.wustl.edu	36	17	7517819	7517819	+	Missense_Mutation	SNP	G	A	A	rs28934574	Unknown	TCGA-24-1416-01	TCGA-24-1416-10	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	7517819	7517819	TP53	17	G	A	A	39
CSPG5	10675	genome.wustl.edu	36	3	47593978	47593978	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1416-01	TCGA-24-1416-10	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	47593978	47593978	CSPG5	3	C	C	T	26
RAD54L2	23132	genome.wustl.edu	36	3	51671746	51671746	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1416-01	TCGA-24-1416-10	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	51671746	51671746	RAD54L2	3	G	G	T	37
ACTBL2	345651	genome.wustl.edu	36	5	56813410	56813410	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1416-01	TCGA-24-1416-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	56813410	56813410	ACTBL2	5	G	G	C	33
OR5B21	219968	genome.wustl.edu	36	11	58031919	58031919	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1416-01	TCGA-24-1416-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	58031919	58031919	OR5B21	11	G	G	A	40
DCAF7	10238	genome.wustl.edu	36	17	59016391	59016391	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1416-01	TCGA-24-1416-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	59016391	59016391	DCAF7	17	C	C	T	22
UGT2B11	10720	genome.wustl.edu	36	4	70114743	70114743	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1416-01	TCGA-24-1416-10	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	70114743	70114743	UGT2B11	4	C	C	G	32
ROBO2	6092	genome.wustl.edu	36	3	76069385	76069385	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1416-01	TCGA-24-1416-10	G	G	G	A	G	A	Unknown	Valid	Germline	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	76069385	76069385	ROBO2	3	G	G	A	39
CCNG2	901	genome.wustl.edu	36	4	78306068	78306068	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-24-1416-01	TCGA-24-1416-10	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	78306068	78306068	CCNG2	4	C	T	T	29
RIMS2	9699	genome.wustl.edu	36	8	105094889	105094889	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1416-01	TCGA-24-1416-10	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	105094889	105094889	RIMS2	8	T	T	G	50
PCDHA3	56145	genome.wustl.edu	36	5	140161156	140161156	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1416-01	TCGA-24-1416-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	140161156	140161156	PCDHA3	5	T	T	C	60
FATE1	89885	genome.wustl.edu	36	X	150641049	150641049	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-1416-01	TCGA-24-1416-10	A	A	A	C	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	150641049	150641049	FATE1	23	A	A	C	7
PIK3CA	5290	genome.wustl.edu	36	3	180434779	180434779	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1416-01	TCGA-24-1416-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	180434779	180434779	PIK3CA	3	A	A	G	8
CPS1	1373	genome.wustl.edu	36	2	211168489	211168489	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1416-01	TCGA-24-1416-10	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	211168489	211168489	CPS1	2	C	C	T	32
ALPL	249	genome.wustl.edu	36	1	21760242	21760242	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1416-01	TCGA-24-1416-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	21760242	21760242	ALPL	1	G	G	A	41
HSP90AA1	3320	genome.wustl.edu	36	14	101621019	101621022	+	Frame_Shift_Del	DEL	TTTC	TTTC	-		Unknown	TCGA-24-1416-01	TCGA-24-1416-10	TTTC	TTTC	TTTC	-	TTTC	TTTC	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Del	DEL	101621019	101621022	HSP90AA1	14	TTTC	TTTC	-	64