Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context PTBP1 5725 genome.wustl.edu 36 19 756531 756531 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 756531 756531 PTBP1 19 C C T 28 RNF167 26001 genome.wustl.edu 36 17 4786470 4786470 + Silent SNP G A A novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 4786470 4786470 RNF167 17 G A A 38 TP53 7157 genome.wustl.edu 36 17 7517846 7517846 + Missense_Mutation SNP G A A novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7517846 7517846 TP53 17 G A A 38 MYO1F 4542 genome.wustl.edu 36 19 8493323 8493323 + Missense_Mutation SNP A A G novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 8493323 8493323 MYO1F 19 A A G 6 PLOD1 5351 genome.wustl.edu 36 1 11946867 11946867 + Silent SNP C C T novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 11946867 11946867 PLOD1 1 C C T 20 SGCZ 137868 genome.wustl.edu 36 8 14139487 14139487 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 14139487 14139487 SGCZ 8 C C T 23 COMP 1311 genome.wustl.edu 36 19 18762377 18762377 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 18762377 18762377 COMP 19 C C T 27 CDH9 1007 genome.wustl.edu 36 5 26951726 26951726 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 C C C A C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 26951726 26951726 CDH9 5 C C A 21 FGR 2268 genome.wustl.edu 36 1 27812397 27812397 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 27812397 27812397 FGR 1 C C A 32 OR2S2 56656 genome.wustl.edu 36 9 35947870 35947870 + Missense_Mutation SNP T T C novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 35947870 35947870 OR2S2 9 T T C 57 CRIM1 51232 genome.wustl.edu 36 2 36598086 36598086 + Silent SNP C C T novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 36598086 36598086 CRIM1 2 C C T 25 TBKBP1 9755 genome.wustl.edu 36 17 43129189 43129189 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 43129189 43129189 TBKBP1 17 C C A 30 TSPAN1 10103 genome.wustl.edu 36 1 46423344 46423344 + Silent SNP C C T novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 46423344 46423344 TSPAN1 1 C C T 21 ARID4A 5926 genome.wustl.edu 36 14 57901182 57901182 + Silent SNP A A T novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 57901182 57901182 ARID4A 14 A A T 9 TMX3 54495 genome.wustl.edu 36 18 64532110 64532110 + Silent SNP T A A novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 T T Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 64532110 64532110 TMX3 18 T A A 57 FHOD1 29109 genome.wustl.edu 36 16 65828778 65828778 + Silent SNP C C A novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 65828778 65828778 FHOD1 16 C C A 23 SRP68 6730 genome.wustl.edu 36 17 71551517 71551517 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 71551517 71551517 SRP68 17 C C A 32 ROBO1 6091 genome.wustl.edu 36 3 78767784 78767784 + Splice_Site_SNP SNP C C G novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 78767784 78767784 ROBO1 3 C C G 24 TSHR 7253 genome.wustl.edu 36 14 80679090 80679090 + Missense_Mutation SNP G G C novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 80679090 80679090 TSHR 14 G G C 33 KCNK10 54207 genome.wustl.edu 36 14 87799467 87799467 + Silent SNP A A C novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 A A Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 87799467 87799467 KCNK10 14 A A C 5 OTUB2 78990 genome.wustl.edu 36 14 93580777 93580777 + Silent SNP G G T novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 93580777 93580777 OTUB2 14 G G T 46 RPA4 29935 genome.wustl.edu 36 X 96026140 96026140 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 96026140 96026140 RPA4 23 G G T 48 GRHL2 79977 genome.wustl.edu 36 8 102701076 102701076 + Missense_Mutation SNP G G T novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 102701076 102701076 GRHL2 8 G G T 46 C7orf66 154907 genome.wustl.edu 36 7 108311794 108311794 + Missense_Mutation SNP A T T novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 A A T T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 108311794 108311794 C7orf66 7 A T T 3 PROK1 84432 genome.wustl.edu 36 1 110795424 110795424 + Silent SNP G G A novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 110795424 110795424 PROK1 1 G G A 45 ARSJ 79642 genome.wustl.edu 36 4 115043527 115043527 + Silent SNP G G A novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Silent SNP 115043527 115043527 ARSJ 4 G G A 45 FXYD2 486 genome.wustl.edu 36 11 117196784 117196784 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 117196784 117196784 FXYD2 11 C C T 24 KALRN 8997 genome.wustl.edu 36 3 125470766 125470766 + Missense_Mutation SNP C T T novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 125470766 125470766 KALRN 3 C T T 27 C10orf137 26098 genome.wustl.edu 36 10 127399835 127399835 + Missense_Mutation SNP C C G novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 127399835 127399835 C10orf137 10 C C G 31 ABTB1 80325 genome.wustl.edu 36 3 128877958 128877958 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 128877958 128877958 ABTB1 3 C C A 18 SEPT8 23176 genome.wustl.edu 36 5 132126087 132126087 + Silent SNP G G A novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 G G G A G G Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 132126087 132126087 SEPT8 5 G G A 40 OC90 729330 genome.wustl.edu 36 8 133106144 133106144 + Nonsense_Mutation SNP G T T novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 G G T T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 133106144 133106144 OC90 8 G T T 46 ANKHD1-EIF4EBP3 404734 genome.wustl.edu 36 5 139795972 139795972 + Missense_Mutation SNP C C T novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 139795972 139795972 ANKHD1-EIF4EBP3 5 C C T 19 POLR3C 10623 genome.wustl.edu 36 1 144319562 144319562 + Silent SNP A A G novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 144319562 144319562 POLR3C 1 A A G 15 DCHS2 54798 genome.wustl.edu 36 4 155461499 155461499 + Missense_Mutation SNP T A A novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 T T A A T T Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 155461499 155461499 DCHS2 4 T A A 62 ECE2 9718 genome.wustl.edu 36 3 185458193 185458193 + Silent SNP C C T novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 185458193 185458193 ECE2 3 C C T 23 PPFIA4 8497 genome.wustl.edu 36 1 201281644 201281644 + Missense_Mutation SNP G C C novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 G G C C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 201281644 201281644 PPFIA4 1 G C C 38 SNAP47 116841 genome.wustl.edu 36 1 226013689 226013689 + Missense_Mutation SNP G G A novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 G G Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 226013689 226013689 SNAP47 1 G G A 44 LOC643194 643194 genome.wustl.edu 36 2 161846027 161846027 + Missense_Mutation SNP C C A novel Unknown TCGA-24-1426-01 TCGA-24-1426-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 161846027 161846027 LOC643194 2 C C A 27