Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ARHGAP17	55114	hgsc.bcm.edu	36	16	24866326	24866328	+	In_Frame_Del	DEL	AGT	AGT	-	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	AGT	AGT	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	24866326	24866328	ARHGAP17	16	AGT	AGT	-	3
ARHGAP6	395	hgsc.bcm.edu	36	X	11097615	11097615	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	11097615	11097615	ARHGAP6	23	C	C	T	22
C19orf57	79173	hgsc.bcm.edu	36	19	13862101	13862101	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	13862101	13862101	C19orf57	19	G	G	T	45
C1orf173	127254	hgsc.bcm.edu	36	1	74810975	74810975	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	74810975	74810975	C1orf173	1	C	C	A	26
CHST15	51363	hgsc.bcm.edu	36	10	125770782	125770784	+	In_Frame_Del	DEL	TGT	TGT	-	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	TGT	TGT	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	125770782	125770784	CHST15	10	TGT	TGT	-	59
CUBN	8029	hgsc.bcm.edu	36	10	17032057	17032057	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	17032057	17032057	CUBN	10	G	G	C	40
DUOX1	53905	hgsc.bcm.edu	36	15	43223678	43223678	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	43223678	43223678	DUOX1	15	C	C	G	23
F8	2157	hgsc.bcm.edu	36	X	153838448	153838448	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	153838448	153838448	F8	23	G	G	T	33
FBXO24	26261	hgsc.bcm.edu	36	7	100028389	100028389	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	100028389	100028389	FBXO24	7	C	C	T	19
FCRL6	343413	hgsc.bcm.edu	36	1	158045941	158045941	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	158045941	158045941	FCRL6	1	G	G	A	45
GABRG1	2565	hgsc.bcm.edu	36	4	45748339	45748339	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	45748339	45748339	GABRG1	4	C	C	T	29
GUCY1A3	2982	hgsc.bcm.edu	36	4	156851177	156851177	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	156851177	156851177	GUCY1A3	4	G	G	A	44
HTATSF1	27336	hgsc.bcm.edu	36	X	135420003	135420003	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	135420003	135420003	HTATSF1	23	C	C	T	29
ITIH5	80760	hgsc.bcm.edu	36	10	7658975	7658975	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	7658975	7658975	ITIH5	10	G	G	C	40
KHK	3795	hgsc.bcm.edu	36	2	27173167	27173167	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	27173167	27173167	KHK	2	C	C	G	17
KIAA2022	340533	hgsc.bcm.edu	36	X	73879897	73879897	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	73879897	73879897	KIAA2022	23	G	G	T	35
LAMA1	284217	hgsc.bcm.edu	36	18	6989480	6989480	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	6989480	6989480	LAMA1	18	C	C	A	29
LRP1B	53353	hgsc.bcm.edu	36	2	141494100	141494100	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	141494100	141494100	LRP1B	2	T	T	G	64
MAP2K4	6416	hgsc.bcm.edu	36	17	11925507	11925507	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	11925507	11925507	MAP2K4	17	C	C	T	19
MSH6	2956	hgsc.bcm.edu	36	2	47887199	47887199	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	47887199	47887199	MSH6	2	A	A	G	7
NPAS4	266743	hgsc.bcm.edu	36	11	65948061	65948063	+	In_Frame_Del	DEL	TCC	TCC	-	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	TCC	TCC	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	65948061	65948063	NPAS4	11	TCC	TCC	-	62
OR10H1	26539	hgsc.bcm.edu	36	19	15779177	15779177	+	Missense_Mutation	SNP	G	G	T	rs62619246	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	15779177	15779177	OR10H1	19	G	G	T	42
OR10H1	26539	hgsc.bcm.edu	36	19	15779201	15779201	+	Missense_Mutation	SNP	A	A	G	rs61745520	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	15779201	15779201	OR10H1	19	A	A	G	11
OR13A1	79290	hgsc.bcm.edu	36	10	45119071	45119071	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	45119071	45119071	OR13A1	10	T	T	A	49
PABPC3	5042	hgsc.bcm.edu	36	13	24569333	24569333	+	Frame_Shift_Del	DEL	A	A	-	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	24569333	24569333	PABPC3	13	A	A	-	5
PAH	5053	hgsc.bcm.edu	36	12	101761622	101761622	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	101761622	101761622	PAH	12	G	G	A	48
PPP2R1A	5518	hgsc.bcm.edu	36	19	57408146	57408146	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	57408146	57408146	PPP2R1A	19	C	C	T	23
RGS7	6000	hgsc.bcm.edu	36	1	239328667	239328667	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	239328667	239328667	RGS7	1	G	G	A	40
RTP1	132112	hgsc.bcm.edu	36	3	188400128	188400128	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	188400128	188400128	RTP1	3	T	C	C	59
SPHKAP	80309	hgsc.bcm.edu	36	2	228594672	228594672	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	228594672	228594672	SPHKAP	2	G	G	A	40
TP53	7157	hgsc.bcm.edu	36	17	7518915	7518915	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7518915	7518915	TP53	17	T	T	C	49
UBR4	23352	hgsc.bcm.edu	36	1	19326770	19326770	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	19326770	19326770	UBR4	1	T	T	G	53
USH2A	7399	hgsc.bcm.edu	36	1	213968096	213968096	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	213968096	213968096	USH2A	1	C	C	T	32
XYLT1	64131	hgsc.bcm.edu	36	16	17160197	17160197	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	17160197	17160197	XYLT1	16	C	C	T	30
ZNF45	7596	hgsc.bcm.edu	36	19	49109815	49109815	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	49109815	49109815	ZNF45	19	C	C	A	20
ZNF518B	85460	hgsc.bcm.edu	36	4	10055182	10055182	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	10055182	10055182	ZNF518B	4	C	C	G	30
ZSCAN29	146050	hgsc.bcm.edu	36	15	41440614	41440614	+	Silent	SNP	G	G	A	rs35278805	Unknown	TCGA-24-1548-01	TCGA-24-1548-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	41440614	41440614	ZSCAN29	15	G	G	A	40