Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ADAMTSL3	57188	hgsc.bcm.edu	36	15	82442585	82442585	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	82442585	82442585	ADAMTSL3	15	A	A	T	7
C1orf43	25912	hgsc.bcm.edu	36	1	152451668	152451668	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	152451668	152451668	C1orf43	1	G	G	A	39
GABBR2	9568	hgsc.bcm.edu	36	9	100256286	100256288	+	In_Frame_Del	DEL	TTG	TTG	-	novel	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	TTG	TTG	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Del	DEL	100256286	100256288	GABBR2	9	TTG	TTG	-	56
GLI3	2737	hgsc.bcm.edu	36	7	42031491	42031491	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	42031491	42031491	GLI3	7	G	G	A	40
HIST1H4E	8367	hgsc.bcm.edu	36	6	26313049	26313049	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	26313049	26313049	HIST1H4E	6	G	G	C	45
IL19	29949	hgsc.bcm.edu	36	1	205082537	205082537	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	205082537	205082537	IL19	1	G	G	A	37
LRRC27	80313	hgsc.bcm.edu	36	10	134025046	134025046	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	134025046	134025046	LRRC27	10	G	G	A	38
MUC15	143662	hgsc.bcm.edu	36	11	26541255	26541255	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	26541255	26541255	MUC15	11	G	G	A	40
MYH4	4622	hgsc.bcm.edu	36	17	10298821	10298821	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	10298821	10298821	MYH4	17	G	G	A	39
MYO1A	4640	hgsc.bcm.edu	36	12	55717073	55717073	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	55717073	55717073	MYO1A	12	G	G	A	39
NDST2	8509	hgsc.bcm.edu	36	10	75233701	75233701	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	75233701	75233701	NDST2	10	C	C	A	32
NOMO2	283820	hgsc.bcm.edu	36	16	18427994	18427994	+	Silent	SNP	A	A	G	rs8921	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	18427994	18427994	NOMO2	16	A	A	G	8
NOMO2	283820	hgsc.bcm.edu	36	16	18436033	18436033	+	Silent	SNP	G	G	T	rs393246	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	18436033	18436033	NOMO2	16	G	G	T	46
NOMO2	283820	hgsc.bcm.edu	36	16	18457472	18457472	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	18457472	18457472	NOMO2	16	C	C	T	27
NOTCH2	4853	hgsc.bcm.edu	36	1	120262689	120262689	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	120262689	120262689	NOTCH2	1	C	C	T	27
NTRK1	4914	hgsc.bcm.edu	36	1	155118005	155118005	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	155118005	155118005	NTRK1	1	C	C	G	23
NTRK3	4916	hgsc.bcm.edu	36	15	86224606	86224606	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	86224606	86224606	NTRK3	15	G	G	A	39
NUP210	23225	hgsc.bcm.edu	36	3	13339842	13339842	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	13339842	13339842	NUP210	3	C	C	A	17
OR5B2	390190	hgsc.bcm.edu	36	11	57946569	57946569	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	57946569	57946569	OR5B2	11	C	C	T	19
POLD4	57804	hgsc.bcm.edu	36	11	66877432	66877432	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	66877432	66877432	POLD4	11	C	C	T	26
PRRX1	5396	hgsc.bcm.edu	36	1	168962105	168962105	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	168962105	168962105	PRRX1	1	G	G	A	40
SLC4A7	9497	hgsc.bcm.edu	36	3	27465245	27465245	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	27465245	27465245	SLC4A7	3	T	T	A	54
SLCO1C1	53919	hgsc.bcm.edu	36	12	20759467	20759467	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	20759467	20759467	SLCO1C1	12	C	C	A	17
SMARCA2	6595	hgsc.bcm.edu	36	9	2044620	2044620	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	2044620	2044620	SMARCA2	9	G	G	T	35
TDG	6996	hgsc.bcm.edu	36	12	102897858	102897859	+	Frame_Shift_Ins	INS	-	-	A	novel	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	102897858	102897859	TDG	12	-	-	A	33
TKT	7086	hgsc.bcm.edu	36	3	53238390	53238390	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	53238390	53238390	TKT	3	C	C	T	27
TP53	7157	hgsc.bcm.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	C	T	rs28934576	Unknown	TCGA-24-1558-01	TCGA-24-1558-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7517845	7517845	TP53	17	C	C	T	19