Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ABR	29	hgsc.bcm.edu	36	17	856123	856124	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	856123	856124	ABR	17	-	-	G	51
AGBL5	60509	hgsc.bcm.edu	36	2	27129391	27129391	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	27129391	27129391	AGBL5	2	C	C	A	21
AMOT	154796	hgsc.bcm.edu	36	X	111910973	111910973	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	111910973	111910973	AMOT	23	T	T	G	54
ARHGEF17	9828	hgsc.bcm.edu	36	11	72754238	72754238	+	Silent	SNP	C	C	T	rs61749197	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	72754238	72754238	ARHGEF17	11	C	C	T	23
ATP9B	374868	hgsc.bcm.edu	36	18	75198300	75198300	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	75198300	75198300	ATP9B	18	G	G	A	37
BACH2	60468	hgsc.bcm.edu	36	6	90775173	90775173	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	90775173	90775173	BACH2	6	C	C	T	29
CDH16	1014	hgsc.bcm.edu	36	16	65500674	65500674	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	65500674	65500674	CDH16	16	T	T	G	52
DDX54	79039	hgsc.bcm.edu	36	12	112085228	112085228	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	112085228	112085228	DDX54	12	C	C	-	28
FLG	2312	hgsc.bcm.edu	36	1	150553011	150553011	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	150553011	150553011	FLG	1	C	C	T	19
FRS3	10817	hgsc.bcm.edu	36	6	41848652	41848652	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	41848652	41848652	FRS3	6	G	G	A	39
GABRA6	2559	hgsc.bcm.edu	36	5	161049331	161049331	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	161049331	161049331	GABRA6	5	C	C	T	17
ITGA2B	3674	hgsc.bcm.edu	36	17	39808977	39808977	+	Splice_Site_SNP	SNP	A	A	T	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	39808977	39808977	ITGA2B	17	A	A	T	14
KIAA1967	57805	hgsc.bcm.edu	36	8	22531809	22531809	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	22531809	22531809	KIAA1967	8	C	C	G	21
LRRC47	57470	hgsc.bcm.edu	36	1	3687595	3687595	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	3687595	3687595	LRRC47	1	C	C	A	30
MGAT4C	25834	hgsc.bcm.edu	36	12	84897953	84897953	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	84897953	84897953	MGAT4C	12	G	G	A	37
NLRC4	58484	hgsc.bcm.edu	36	2	32329080	32329080	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	32329080	32329080	NLRC4	2	G	G	A	40
NLRP8	126205	hgsc.bcm.edu	36	19	61158007	61158007	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	61158007	61158007	NLRP8	19	C	C	T	23
NRBP1	29959	hgsc.bcm.edu	36	2	27516209	27516209	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	27516209	27516209	NRBP1	2	G	G	C	34
NUP210	23225	hgsc.bcm.edu	36	3	13334231	13334231	+	Nonsense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	13334231	13334231	NUP210	3	T	T	A	63
CDHR1	92211	hgsc.bcm.edu	36	10	85962922	85962922	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	85962922	85962922	CDHR1	10	G	G	A	39
PCDHB15	56121	hgsc.bcm.edu	36	5	140606488	140606488	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	140606488	140606488	PCDHB15	5	G	G	A	35
PHF12	57649	hgsc.bcm.edu	36	17	24268578	24268578	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	24268578	24268578	PHF12	17	T	T	C	49
PRDM14	63978	hgsc.bcm.edu	36	8	71130158	71130158	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	71130158	71130158	PRDM14	8	A	A	G	3
RBBP6	5930	hgsc.bcm.edu	36	16	24485992	24485992	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	24485992	24485992	RBBP6	16	C	C	T	27
RHBDF2	79651	hgsc.bcm.edu	36	17	71980731	71980731	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	71980731	71980731	RHBDF2	17	C	C	-	18
ROR2	4920	hgsc.bcm.edu	36	9	93526081	93526081	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	93526081	93526081	ROR2	9	G	G	A	39
SLC6A5	9152	hgsc.bcm.edu	36	11	20582513	20582513	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	20582513	20582513	SLC6A5	11	A	A	T	11
STAT6	6778	hgsc.bcm.edu	36	12	55782944	55782944	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	55782944	55782944	STAT6	12	C	C	G	19
THBS3	7059	hgsc.bcm.edu	36	1	153434495	153434495	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	153434495	153434495	THBS3	1	C	C	G	29
TP53	7157	hgsc.bcm.edu	36	17	7518276	7518276	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7518276	7518276	TP53	17	C	C	A	22
WRNIP1	56897	hgsc.bcm.edu	36	6	2729565	2729565	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1560-01	TCGA-24-1560-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	2729565	2729565	WRNIP1	6	G	G	A	33