Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
APC	324	hgsc.bcm.edu	36	5	112204518	112204518	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	112204518	112204518	APC	5	A	A	G	13
BMI1	648	hgsc.bcm.edu	36	10	22655470	22655470	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	22655470	22655470	BMI1	10	C	C	A	17
C14orf148	122945	hgsc.bcm.edu	36	14	76950212	76950212	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	76950212	76950212	C14orf148	14	T	T	A	52
C1orf183	55924	hgsc.bcm.edu	36	1	112071340	112071340	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	112071340	112071340	C1orf183	1	C	C	A	29
CLEC4F	165530	hgsc.bcm.edu	36	2	70889992	70889992	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	70889992	70889992	CLEC4F	2	T	T	G	62
CNGA3	1261	hgsc.bcm.edu	36	2	98360684	98360684	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	98360684	98360684	CNGA3	2	G	G	T	35
DENND1A	57706	hgsc.bcm.edu	36	9	125432577	125432577	+	Splice_Site_SNP	SNP	C	C	G	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	125432577	125432577	DENND1A	9	C	C	G	28
DMXL2	23312	hgsc.bcm.edu	36	15	49579143	49579143	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	49579143	49579143	DMXL2	15	A	A	T	16
FAM102A	399665	hgsc.bcm.edu	36	9	129755943	129755943	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	129755943	129755943	FAM102A	9	G	G	A	35
GPR4	2828	hgsc.bcm.edu	36	19	50786000	50786000	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	50786000	50786000	GPR4	19	G	G	T	44
GTF2IRD1	9569	hgsc.bcm.edu	36	7	73643154	73643154	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	73643154	73643154	GTF2IRD1	7	C	C	T	19
HTATSF1	27336	hgsc.bcm.edu	36	X	135407528	135407528	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	135407528	135407528	HTATSF1	23	G	G	C	41
IFI6	2537	hgsc.bcm.edu	36	1	27865537	27865537	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	27865537	27865537	IFI6	1	C	C	G	18
INADL	10207	hgsc.bcm.edu	36	1	62137900	62137900	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	62137900	62137900	INADL	1	G	G	T	43
IVNS1ABP	10625	hgsc.bcm.edu	36	1	183537277	183537277	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	183537277	183537277	IVNS1ABP	1	G	G	A	46
KAL1	3730	hgsc.bcm.edu	36	X	8515963	8515963	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	8515963	8515963	KAL1	23	G	G	T	34
KIAA1217	56243	hgsc.bcm.edu	36	10	24872409	24872409	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	24872409	24872409	KIAA1217	10	G	G	T	45
KIAA1409	57578	hgsc.bcm.edu	36	14	93133499	93133499	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	93133499	93133499	KIAA1409	14	T	T	C	54
LAMA1	284217	hgsc.bcm.edu	36	18	6976307	6976307	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	6976307	6976307	LAMA1	18	G	G	A	44
LCT	3938	hgsc.bcm.edu	36	2	136291618	136291618	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	136291618	136291618	LCT	2	C	C	A	28
LGR6	59352	hgsc.bcm.edu	36	1	200516573	200516585	+	Frame_Shift_Del	DEL	GCTTCGAGGGGCT	GCTTCGAGGGGCT	-	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	GCTTCGAGGGGCT	GCTTCGAGGGGCT	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	200516573	200516585	LGR6	1	GCTTCGAGGGGCT	GCTTCGAGGGGCT	-	34
MAN2B2	23324	hgsc.bcm.edu	36	4	6670082	6670082	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	6670082	6670082	MAN2B2	4	G	G	T	41
MAP3K10	4294	hgsc.bcm.edu	36	19	45396137	45396137	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	45396137	45396137	MAP3K10	19	C	C	A	26
MFSD2A	84879	hgsc.bcm.edu	36	1	40195401	40195401	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	40195401	40195401	MFSD2A	1	C	C	G	25
MICAL1	64780	hgsc.bcm.edu	36	6	109872832	109872832	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	109872832	109872832	MICAL1	6	T	T	G	62
MYCL1	4610	hgsc.bcm.edu	36	1	40135829	40135829	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	40135829	40135829	MYCL1	1	C	C	G	27
MYPN	84665	hgsc.bcm.edu	36	10	69596398	69596398	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	69596398	69596398	MYPN	10	G	G	C	33
NFASC	23114	hgsc.bcm.edu	36	1	203206450	203206450	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	203206450	203206450	NFASC	1	A	A	T	1
NSUN5P2	260294	hgsc.bcm.edu	36	7	72058357	72058357	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	72058357	72058357	NSUN5P2	7	T	T	-	56
ODZ1	10178	hgsc.bcm.edu	36	X	123345314	123345314	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	123345314	123345314	ODZ1	23	C	C	T	24
PDAP1	11333	hgsc.bcm.edu	36	7	98839005	98839005	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	98839005	98839005	PDAP1	7	C	C	-	32
PDE6H	5149	hgsc.bcm.edu	36	12	15022348	15022348	+	Splice_Site_SNP	SNP	G	G	C	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	15022348	15022348	PDE6H	12	G	G	C	44
PDGFC	56034	hgsc.bcm.edu	36	4	157951447	157951447	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	157951447	157951447	PDGFC	4	C	C	A	17
PGBD1	84547	hgsc.bcm.edu	36	6	28377517	28377517	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	28377517	28377517	PGBD1	6	T	T	G	63
PPHLN1	51535	hgsc.bcm.edu	36	12	41015986	41015986	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	41015986	41015986	PPHLN1	12	A	A	C	10
RAPGEF6	51735	hgsc.bcm.edu	36	5	130843272	130843272	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	130843272	130843272	RAPGEF6	5	T	T	G	64
RND1	27289	hgsc.bcm.edu	36	12	47545777	47545777	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	47545777	47545777	RND1	12	C	C	A	17
RNF128	79589	hgsc.bcm.edu	36	X	105921083	105921083	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	105921083	105921083	RNF128	23	A	A	G	7
SARS2	54938	hgsc.bcm.edu	36	19	44113066	44113066	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	44113066	44113066	SARS2	19	C	C	A	22
SEC63	11231	hgsc.bcm.edu	36	6	108352750	108352750	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	108352750	108352750	SEC63	6	C	C	A	32
SLAMF1	6504	hgsc.bcm.edu	36	1	158883331	158883331	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	158883331	158883331	SLAMF1	1	G	G	A	44
SLC23A2	9962	hgsc.bcm.edu	36	20	4785800	4785800	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	4785800	4785800	SLC23A2	20	C	C	G	24
SLC26A4	5172	hgsc.bcm.edu	36	7	107129629	107129629	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	107129629	107129629	SLC26A4	7	C	C	A	32
SNPH	9751	hgsc.bcm.edu	36	20	1225867	1225867	+	Nonsense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	1225867	1225867	SNPH	20	C	C	G	17
ST3GAL2	6483	hgsc.bcm.edu	36	16	68974620	68974620	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	68974620	68974620	ST3GAL2	16	A	A	G	10
STC2	8614	hgsc.bcm.edu	36	5	172687737	172687737	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	172687737	172687737	STC2	5	C	C	G	27
TMED6	146456	hgsc.bcm.edu	36	16	67934832	67934832	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	67934832	67934832	TMED6	16	A	A	G	16
TP53	7157	hgsc.bcm.edu	36	17	7517819	7517819	+	Missense_Mutation	SNP	G	G	A	rs28934574	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7517819	7517819	TP53	17	G	G	A	39
TTC18	118491	hgsc.bcm.edu	36	10	74784536	74784536	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	74784536	74784536	TTC18	10	T	T	C	55
VAV3	10451	hgsc.bcm.edu	36	1	108101405	108101405	+	Splice_Site_SNP	SNP	C	C	G	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	108101405	108101405	VAV3	1	C	C	G	18
VIT	5212	hgsc.bcm.edu	36	2	36864042	36864042	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	36864042	36864042	VIT	2	A	A	G	11
XRN2	22803	hgsc.bcm.edu	36	20	21284789	21284789	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1567-01	TCGA-24-1567-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	21284789	21284789	XRN2	20	G	G	T	33