Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ARHGEF9	23229	hgsc.bcm.edu	36	X	62842964	62842964	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	62842964	62842964	ARHGEF9	23	C	C	A	22
ARMC4	55130	hgsc.bcm.edu	36	10	28323962	28323962	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	28323962	28323962	ARMC4	10	T	T	G	54
B3GAT2	135152	hgsc.bcm.edu	36	6	71660655	71660655	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	71660655	71660655	B3GAT2	6	C	C	G	21
C11orf87	399947	hgsc.bcm.edu	36	11	108799745	108799745	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	108799745	108799745	C11orf87	11	C	C	A	30
CACNA1S	779	hgsc.bcm.edu	36	1	199319053	199319053	+	Frame_Shift_Del	DEL	T	T	-	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	199319053	199319053	CACNA1S	1	T	T	-	60
CORO2A	7464	hgsc.bcm.edu	36	9	99937037	99937037	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	99937037	99937037	CORO2A	9	T	T	C	63
DACH2	117154	hgsc.bcm.edu	36	X	85836768	85836768	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	85836768	85836768	DACH2	23	A	A	C	15
DCC	1630	hgsc.bcm.edu	36	18	48959483	48959483	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	48959483	48959483	DCC	18	G	G	C	36
EFEMP1	2202	hgsc.bcm.edu	36	2	55951730	55951730	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	55951730	55951730	EFEMP1	2	G	G	A	39
EPHA3	2042	hgsc.bcm.edu	36	3	89342107	89342107	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	89342107	89342107	EPHA3	3	T	T	G	59
ERCC5	2073	hgsc.bcm.edu	36	13	102322697	102322697	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	102322697	102322697	ERCC5	13	G	G	T	45
GALNT14	79623	hgsc.bcm.edu	36	2	31008495	31008495	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	31008495	31008495	GALNT14	2	A	A	C	10
GDF3	9573	hgsc.bcm.edu	36	12	7739486	7739486	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	7739486	7739486	GDF3	12	C	C	-	32
H2AFY	9555	hgsc.bcm.edu	36	5	134706992	134706992	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	134706992	134706992	H2AFY	5	G	G	T	47
HKDC1	80201	hgsc.bcm.edu	36	10	70662831	70662831	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	70662831	70662831	HKDC1	10	A	A	C	3
HUWE1	10075	hgsc.bcm.edu	36	X	53618861	53618861	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	53618861	53618861	HUWE1	23	A	A	G	12
IL7R	3575	hgsc.bcm.edu	36	5	35912067	35912067	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	35912067	35912067	IL7R	5	A	A	T	6
KCNIP3	30818	hgsc.bcm.edu	36	2	95403774	95403774	+	Frame_Shift_Del	DEL	G	G	-	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	95403774	95403774	KCNIP3	2	G	G	-	34
KCNIP3	30818	hgsc.bcm.edu	36	2	95403838	95403838	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	95403838	95403838	KCNIP3	2	G	G	A	35
NR2F1	7025	hgsc.bcm.edu	36	5	92946865	92946865	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	92946865	92946865	NR2F1	5	A	A	G	2
OR5M1	390168	hgsc.bcm.edu	36	11	56137239	56137239	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	56137239	56137239	OR5M1	11	C	C	T	27
PHF20L1	51105	hgsc.bcm.edu	36	8	133876184	133876184	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	133876184	133876184	PHF20L1	8	T	T	C	62
PION	54103	hgsc.bcm.edu	36	7	76842310	76842310	+	Splice_Site_SNP	SNP	C	C	T	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Splice_Site_SNP	SNP	76842310	76842310	PION	7	C	C	T	20
PPT1	5538	hgsc.bcm.edu	36	1	40318657	40318657	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	40318657	40318657	PPT1	1	C	T	T	23
PRAF2	11230	hgsc.bcm.edu	36	X	48818498	48818498	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	48818498	48818498	PRAF2	23	C	C	G	28
PXDNL	137902	hgsc.bcm.edu	36	8	52395062	52395062	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	52395062	52395062	PXDNL	8	G	G	T	44
RBM18	92400	hgsc.bcm.edu	36	9	124053976	124053976	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	124053976	124053976	RBM18	9	A	A	T	15
RENBP	5973	hgsc.bcm.edu	36	X	152860231	152860231	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	152860231	152860231	RENBP	23	G	G	T	42
RNF146	81847	hgsc.bcm.edu	36	6	127650166	127650166	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	127650166	127650166	RNF146	6	G	G	A	46
SIN3B	23309	hgsc.bcm.edu	36	19	16834182	16834182	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	16834182	16834182	SIN3B	19	G	G	T	46
SLC1A6	6511	hgsc.bcm.edu	36	19	14940174	14940174	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	14940174	14940174	SLC1A6	19	C	C	T	25
SPAG5	10615	hgsc.bcm.edu	36	17	23942909	23942909	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	23942909	23942909	SPAG5	17	G	G	T	42
TBCD	6904	hgsc.bcm.edu	36	17	78457104	78457104	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	78457104	78457104	TBCD	17	T	T	C	62
TEX2	55852	hgsc.bcm.edu	36	17	59619296	59619296	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	59619296	59619296	TEX2	17	C	C	G	25
TP53	7157	hgsc.bcm.edu	36	17	7519186	7519186	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7519186	7519186	TP53	17	C	C	A	19
TSPYL1	7259	hgsc.bcm.edu	36	6	116707158	116707159	+	In_Frame_Ins	INS	-	-	CAC	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Ins	INS	116707158	116707159	TSPYL1	6	-	-	CAC	62
TTC24	164118	hgsc.bcm.edu	36	1	154822140	154822140	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	154822140	154822140	TTC24	1	C	C	T	30
ZFHX4	79776	hgsc.bcm.edu	36	8	77929002	77929002	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	77929002	77929002	ZFHX4	8	A	A	G	8
ZNF804A	91752	hgsc.bcm.edu	36	2	185510456	185510456	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-1614-01	TCGA-24-1614-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	185510456	185510456	ZNF804A	2	C	C	A	17