Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context E2F2 1870 broad.mit.edu 36 1 23729810 23729810 + Silent SNP C C A novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 23729810 23729810 E2F2 1 C C A 31 LHX8 431707 broad.mit.edu 36 1 75399099 75399099 + Silent SNP A A C novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 75399099 75399099 LHX8 1 A A C 6 SLC44A5 204962 broad.mit.edu 36 1 75476848 75476848 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 75476848 75476848 SLC44A5 1 C C G 32 DNMBP 23268 broad.mit.edu 36 10 101721823 101721823 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 101721823 101721823 DNMBP 10 C C T 19 MRGPRX2 117194 broad.mit.edu 36 11 19034061 19034061 + Silent SNP G G A novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 19034061 19034061 MRGPRX2 11 G G A 43 RCOR2 283248 broad.mit.edu 36 11 63438132 63438132 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 63438132 63438132 RCOR2 11 C C T 31 ADAMTS8 11095 broad.mit.edu 36 11 129780955 129780955 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 129780955 129780955 ADAMTS8 11 A A G 10 ATP2A2 488 broad.mit.edu 36 12 109267487 109267487 + Silent SNP T T C novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 109267487 109267487 ATP2A2 12 T T C 52 DCAF5 8816 broad.mit.edu 36 14 68590696 68590696 + Missense_Mutation SNP A A T novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 68590696 68590696 DCAF5 14 A A T 6 WDR76 79968 broad.mit.edu 36 15 41907809 41907809 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 41907809 41907809 WDR76 15 G G A 41 RAB26 25837 broad.mit.edu 36 16 2143195 2143195 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 2143195 2143195 RAB26 16 C C G 19 RAB26 25837 broad.mit.edu 36 16 2143197 2143197 + Missense_Mutation SNP T T G novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 2143197 2143197 RAB26 16 T T G 59 ANKRD11 29123 broad.mit.edu 36 16 87874531 87874531 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 87874531 87874531 ANKRD11 16 G G A 42 ATP2A3 489 broad.mit.edu 36 17 3778345 3778345 + Silent SNP C C T novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 3778345 3778345 ATP2A3 17 C C T 30 TP53 7157 broad.mit.edu 36 17 7518311 7518311 + Missense_Mutation SNP A A T novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7518311 7518311 TP53 17 A A T 12 DNAH2 146754 broad.mit.edu 36 17 7622388 7622388 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 7622388 7622388 DNAH2 17 G G A 42 TEX2 55852 broad.mit.edu 36 17 59645280 59645280 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 59645280 59645280 TEX2 17 C C A 32 KIF19 124602 broad.mit.edu 36 17 69862025 69862025 + Missense_Mutation SNP A A C novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 69862025 69862025 KIF19 17 A A C 6 CDH2 1000 broad.mit.edu 36 18 23839844 23839844 + Missense_Mutation SNP A A T novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 23839844 23839844 CDH2 18 A A T 5 DSG2 1829 broad.mit.edu 36 18 27375185 27375185 + Silent SNP C C T novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 27375185 27375185 DSG2 18 C C T 27 FAM108A1 81926 broad.mit.edu 36 19 1831007 1831007 + Missense_Mutation SNP T T G rs7248295 Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 1831007 1831007 FAM108A1 19 T T G 57 DNM2 1785 broad.mit.edu 36 19 10791733 10791734 + Missense_Mutation DNP GC GC TG novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 10791733 10791734 DNM2 19 GC GC TG 34 PCGF1 84759 broad.mit.edu 36 2 74586392 74586392 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 74586392 74586392 PCGF1 2 T T C 63 THSD7B 80731 broad.mit.edu 36 2 137885763 137885763 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 137885763 137885763 THSD7B 2 G G T 46 FASTKD1 79675 broad.mit.edu 36 2 170125449 170125449 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 170125449 170125449 FASTKD1 2 G G C 44 AOX1 316 broad.mit.edu 36 2 201235890 201235890 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 201235890 201235890 AOX1 2 G G A 34 ZDBF2 57683 broad.mit.edu 36 2 206880751 206880751 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 206880751 206880751 ZDBF2 2 A A G 9 MITF 4286 broad.mit.edu 36 3 70091212 70091212 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 70091212 70091212 MITF 3 G G T 37 UGT2B10 7365 broad.mit.edu 36 4 69716510 69716510 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 69716510 69716510 UGT2B10 4 C C A 32 PCDH1 5097 broad.mit.edu 36 5 141228620 141228620 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 141228620 141228620 PCDH1 5 C C T 23 GPR151 134391 broad.mit.edu 36 5 145874993 145874993 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 145874993 145874993 GPR151 5 C C T 20 C5orf4 10826 broad.mit.edu 36 5 154183346 154183346 + Splice_Site_SNP SNP C C T novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 154183346 154183346 C5orf4 5 C C T 24 AIMP2 7965 broad.mit.edu 36 7 6024012 6024012 + Silent SNP G G T novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 6024012 6024012 AIMP2 7 G G T 39 CHRNB3 1142 broad.mit.edu 36 8 42706201 42706201 + Silent SNP C C T novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 42706201 42706201 CHRNB3 8 C C T 19 TAF2 6873 broad.mit.edu 36 8 120878471 120878471 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 120878471 120878471 TAF2 8 C C G 24 SEC16A 9919 broad.mit.edu 36 9 138461944 138461944 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 138461944 138461944 SEC16A 9 G G A 43 GPR143 4935 broad.mit.edu 36 X 9671619 9671619 + Silent SNP C C A novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 9671619 9671619 GPR143 23 C C A 21 BEND2 139105 broad.mit.edu 36 X 18131659 18131659 + Nonsense_Mutation SNP G G A novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 18131659 18131659 BEND2 23 G G A 40 TFE3 7030 broad.mit.edu 36 X 48777971 48777971 + Silent SNP G G A novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 48777971 48777971 TFE3 23 G G A 40 KIF4A 24137 broad.mit.edu 36 X 69543574 69543574 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 69543574 69543574 KIF4A 23 G G A 44 ZMAT1 84460 broad.mit.edu 36 X 101039517 101039517 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 101039517 101039517 ZMAT1 23 G G A 45 ZIC3 7547 broad.mit.edu 36 X 136477535 136477535 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2019-01 TCGA-24-2019-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 136477535 136477535 ZIC3 23 C C G 26