Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context RPS6KA1 6195 broad.mit.edu 36 1 26758014 26758014 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 26758014 26758014 RPS6KA1 1 A A G 7 RPS6KA1 6195 broad.mit.edu 36 1 26770634 26770634 + Silent SNP T T G novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 26770634 26770634 RPS6KA1 1 T T G 55 GJB4 127534 broad.mit.edu 36 1 34999784 34999784 + Silent SNP G G A novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 34999784 34999784 GJB4 1 G G A 40 ZNF643 65243 broad.mit.edu 36 1 40701834 40701834 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 40701834 40701834 ZNF643 1 A A G 7 CYP4B1 1580 broad.mit.edu 36 1 47052562 47052562 + Silent SNP C C G novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 47052562 47052562 CYP4B1 1 C C G 30 ADAMTSL4 54507 broad.mit.edu 36 1 148797711 148797711 + Missense_Mutation SNP T T A novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 148797711 148797711 ADAMTSL4 1 T T A 55 GNPAT 8443 broad.mit.edu 36 1 229477797 229477797 + Missense_Mutation SNP T T G novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 229477797 229477797 GNPAT 1 T T G 52 CNNM2 54805 broad.mit.edu 36 10 104669537 104669537 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 104669537 104669537 CNNM2 10 G G A 43 CCDC87 55231 broad.mit.edu 36 11 66116369 66116369 + Nonsense_Mutation SNP G G A novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 66116369 66116369 CCDC87 11 G G A 47 USP15 9958 broad.mit.edu 36 12 60994859 60994859 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 60994859 60994859 USP15 12 G G T 48 TMEM132D 121256 broad.mit.edu 36 12 128129077 128129077 + Silent SNP G G T novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 128129077 128129077 TMEM132D 12 G G T 33 ARHGEF7 8874 broad.mit.edu 36 13 110733538 110733538 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 110733538 110733538 ARHGEF7 13 G G A 38 SEC23A 10484 broad.mit.edu 36 14 38606220 38606220 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 38606220 38606220 SEC23A 14 T T C 57 FAM164C 79696 broad.mit.edu 36 14 74607132 74607132 + Missense_Mutation SNP T T A novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 74607132 74607132 FAM164C 14 T T A 61 CHRNA5 1138 broad.mit.edu 36 15 76667716 76667716 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 76667716 76667716 CHRNA5 15 G G C 41 TP53 7157 broad.mit.edu 36 17 7519095 7519095 + Splice_Site_SNP SNP C C T novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 7519095 7519095 TP53 17 C C T 18 CCDC40 55036 broad.mit.edu 36 17 75678253 75678254 + Missense_Mutation DNP TG TG AC novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 75678253 75678254 CCDC40 17 TG TG AC 51 MPND 84954 broad.mit.edu 36 19 4306115 4306115 + Missense_Mutation SNP T T G novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 4306115 4306115 MPND 19 T T G 62 PTPRS 5802 broad.mit.edu 36 19 5165445 5165445 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 5165445 5165445 PTPRS 19 C C A 26 ANO8 57719 broad.mit.edu 36 19 17296810 17296810 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 17296810 17296810 ANO8 19 C C A 26 ZNF208 7757 broad.mit.edu 36 19 21947946 21947946 + Missense_Mutation SNP A A C novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 21947946 21947946 ZNF208 19 A A C 14 ZNF529 57711 broad.mit.edu 36 19 41730515 41730515 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 41730515 41730515 ZNF529 19 G G A 44 PRKD2 25865 broad.mit.edu 36 19 51899265 51899265 + Splice_Site_SNP SNP C C G novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Splice_Site_SNP SNP 51899265 51899265 PRKD2 19 C C G 18 PLEKHA4 57664 broad.mit.edu 36 19 54036374 54036374 + Silent SNP C C T novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 54036374 54036374 PLEKHA4 19 C C T 23 CPT1C 126129 broad.mit.edu 36 19 54905876 54905876 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 54905876 54905876 CPT1C 19 A A G 6 BIRC6 57448 broad.mit.edu 36 2 32624379 32624379 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 32624379 32624379 BIRC6 2 C C T 28 MRPS5 64969 broad.mit.edu 36 2 95144607 95144607 + Nonsense_Mutation SNP G G A novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Nonsense_Mutation SNP 95144607 95144607 MRPS5 2 G G A 48 TMEM131 23505 broad.mit.edu 36 2 97795420 97795420 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 97795420 97795420 TMEM131 2 C C A 32 GLI2 2736 broad.mit.edu 36 2 121425309 121425309 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 121425309 121425309 GLI2 2 G G A 34 MOBKL3 25843 broad.mit.edu 36 2 198089100 198089100 + Silent SNP G G A novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 198089100 198089100 MOBKL3 2 G G A 39 BCS1L 617 broad.mit.edu 36 2 219236179 219236179 + Silent SNP C C G novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 219236179 219236179 BCS1L 2 C C G 22 FBXO36 130888 broad.mit.edu 36 2 230583769 230583769 + Silent SNP C C A novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 230583769 230583769 FBXO36 2 C C A 21 PLCB1 23236 broad.mit.edu 36 20 8665739 8665739 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 8665739 8665739 PLCB1 20 G G C 44 PCNT 5116 broad.mit.edu 36 21 46590524 46590524 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 46590524 46590524 PCNT 21 G G T 33 PCNT 5116 broad.mit.edu 36 21 46591329 46591329 + Missense_Mutation SNP G G T novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 46591329 46591329 PCNT 21 G G T 41 APOBEC3A 200315 broad.mit.edu 36 22 37683664 37683664 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 37683664 37683664 APOBEC3A 22 G G A 39 C3orf63 23272 broad.mit.edu 36 3 56642329 56642329 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56642329 56642329 C3orf63 3 A A G 4 ARHGEF3 50650 broad.mit.edu 36 3 56746316 56746316 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 56746316 56746316 ARHGEF3 3 G G C 36 PRICKLE2 166336 broad.mit.edu 36 3 64060310 64060310 + Silent SNP G G T novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 64060310 64060310 PRICKLE2 3 G G T 47 CHST2 9435 broad.mit.edu 36 3 144323842 144323842 + Missense_Mutation SNP T T A novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 144323842 144323842 CHST2 3 T T A 64 GMPS 8833 broad.mit.edu 36 3 157116538 157116538 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 157116538 157116538 GMPS 3 C C G 18 ENAM 10117 broad.mit.edu 36 4 71727058 71727058 + Missense_Mutation SNP A A G novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 71727058 71727058 ENAM 4 A A G 7 ZNF622 90441 broad.mit.edu 36 5 16504862 16504862 + Silent SNP C C T novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 16504862 16504862 ZNF622 5 C C T 20 TRIM23 373 broad.mit.edu 36 5 64928093 64928093 + Missense_Mutation SNP T T G novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 64928093 64928093 TRIM23 5 T T G 62 SERINC5 256987 broad.mit.edu 36 5 79482464 79482464 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 79482464 79482464 SERINC5 5 C C A 21 RASGRF2 5924 broad.mit.edu 36 5 80445146 80445146 + Missense_Mutation SNP C C A novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 80445146 80445146 RASGRF2 5 C C A 17 VCAN 1462 broad.mit.edu 36 5 82873282 82873282 + Missense_Mutation SNP G G C novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 82873282 82873282 VCAN 5 G G C 33 RIOK1 83732 broad.mit.edu 36 6 7340356 7340356 + Silent SNP T T C novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 7340356 7340356 RIOK1 6 T T C 63 VEGFA 7422 broad.mit.edu 36 6 43854193 43854193 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 43854193 43854193 VEGFA 6 C C T 29 TSPAN33 340348 broad.mit.edu 36 7 128593914 128593914 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 128593914 128593914 TSPAN33 7 C C G 28 AGK 55750 broad.mit.edu 36 7 140961779 140961779 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 140961779 140961779 AGK 7 G G A 43 CYP7A1 1581 broad.mit.edu 36 8 59566702 59566702 + Missense_Mutation SNP C C G novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 59566702 59566702 CYP7A1 8 C C G 21 HNF4G 3174 broad.mit.edu 36 8 76638801 76638801 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 76638801 76638801 HNF4G 8 G G A 42 NDRG1 10397 broad.mit.edu 36 8 134329302 134329302 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 134329302 134329302 NDRG1 8 C C T 19 DDX58 23586 broad.mit.edu 36 9 32475257 32475257 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 32475257 32475257 DDX58 9 G G A 40 KIF24 347240 broad.mit.edu 36 9 34247626 34247626 + Missense_Mutation SNP T T C novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 34247626 34247626 KIF24 9 T T C 64 ACE2 59272 broad.mit.edu 36 X 15506329 15506329 + Silent SNP G G A novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 15506329 15506329 ACE2 23 G G A 40 MAGEB6 158809 broad.mit.edu 36 X 26122301 26122301 + Silent SNP C C A novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 26122301 26122301 MAGEB6 23 C C A 22 DMD 1756 broad.mit.edu 36 X 31075451 31075451 + Silent SNP G G T novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Silent SNP 31075451 31075451 DMD 23 G G T 43 PSMD10 5716 broad.mit.edu 36 X 107214958 107214958 + Missense_Mutation SNP C C T novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 107214958 107214958 PSMD10 23 C C T 24 ZNF280C 55609 broad.mit.edu 36 X 129205285 129205285 + Missense_Mutation SNP G G A novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation SNP 129205285 129205285 ZNF280C 23 G G A 37 FLNA 2316 broad.mit.edu 36 X 153246510 153246511 + Missense_Mutation DNP TT TT CC novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown x x --- x Broad Missense_Mutation DNP 153246510 153246511 FLNA 23 TT TT CC 56 TRPV2 51393 broad.mit.edu 36 17 16276091 16276092 + Frame_Shift_Ins INS - A - novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Ins INS 16276091 16276092 TRPV2 17 - A - 17 OR4F21 441308 broad.mit.edu 36 8 106893 106894 + Frame_Shift_Del DEL GA - GA novel Unknown TCGA-24-2030-01 TCGA-24-2030-10 Unknown Unknown Unknown Phase_I Capture --- Illumina GAIIx Broad Frame_Shift_Del DEL 106893 106894 OR4F21 8 GA - GA 45