Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer dataset type classification start end gene chr ref_allele tum_allele1 tum_allele2 context TP53 7157 genome.wustl.edu 36 17 7517845 7517845 + Missense_Mutation SNP C T T rs28934576 Unknown TCGA-25-1315-01 TCGA-25-1315-10 C C T T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 7517845 7517845 TP53 17 C T T 19 TAS2R1 50834 genome.wustl.edu 36 5 9682483 9682483 + Missense_Mutation SNP C C A novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 9682483 9682483 TAS2R1 5 C C A 18 IRAK2 3656 genome.wustl.edu 36 3 10229964 10229964 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 C C Unknown Unknown Somatic 4 Capture 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 10229964 10229964 IRAK2 3 C C T 25 C6orf105 84830 genome.wustl.edu 36 6 11831642 11831643 + Missense DNP GC GC AT novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 GC GC GC AT GC GC Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense DNP 11831642 11831643 C6orf105 6 GC GC AT 34 MAN2B1 4125 genome.wustl.edu 36 19 12636790 12636790 + Missense_Mutation SNP T T A novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 12636790 12636790 MAN2B1 19 T T A 54 OR7C1 26664 genome.wustl.edu 36 19 14771239 14771239 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 14771239 14771239 OR7C1 19 G G A 38 uc002ddh.1 genome.wustl.edu 36 16 15115830 15115830 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 15115830 15115830 uc002ddh.1 16 C C T 25 ZNF624 57547 genome.wustl.edu 36 17 16466375 16466375 + Silent SNP G G A novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 16466375 16466375 ZNF624 17 G G A 42 JAK3 3718 genome.wustl.edu 36 19 17798626 17798626 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 17798626 17798626 JAK3 19 C C T 23 TXNRD2 10587 genome.wustl.edu 36 22 18282798 18282798 + Missense_Mutation SNP A A T novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 18282798 18282798 TXNRD2 22 A A T 4 LOC388076 388076 genome.wustl.edu 36 15 19941836 19941836 + Missense_Mutation SNP C C G novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 19941836 19941836 LOC388076 15 C C G 24 ACSM2B 348158 genome.wustl.edu 36 16 20461777 20461777 + Missense_Mutation SNP T T G novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 20461777 20461777 ACSM2B 16 T T G 54 LDHB 3945 genome.wustl.edu 36 12 21688176 21688176 + Missense_Mutation SNP C C G novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 21688176 21688176 LDHB 12 C C G 20 SPOCD1 90853 genome.wustl.edu 36 1 32053079 32053079 + Missense_Mutation SNP G G T novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 32053079 32053079 SPOCD1 1 G G T 42 TRPC4 7223 genome.wustl.edu 36 13 37123513 37123513 + Silent SNP G C C novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 G G C C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 37123513 37123513 TRPC4 13 G C C 35 YBX1 4904 genome.wustl.edu 36 1 42935444 42935444 + Missense_Mutation SNP G G C novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 42935444 42935444 YBX1 1 G G C 45 RAD54L 8438 genome.wustl.edu 36 1 46516416 46516416 + Missense_Mutation SNP A A G novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 46516416 46516416 RAD54L 1 A A G 9 MEX3C 51320 genome.wustl.edu 36 18 46957664 46957664 + Missense_Mutation SNP T T G novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 46957664 46957664 MEX3C 18 T T G 56 CYP4X1 260293 genome.wustl.edu 36 1 47274354 47274354 + Missense_Mutation SNP C C G novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 47274354 47274354 CYP4X1 1 C C G 17 PKD1L1 168507 genome.wustl.edu 36 7 47853061 47853061 + Silent SNP C C T novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 47853061 47853061 PKD1L1 7 C C T 20 ENSG00000181943 genome.wustl.edu 36 11 55015968 55015968 + Missense_Mutation SNP G G T novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 55015968 55015968 ENSG00000181943 11 G G T 48 OR8K3 219473 genome.wustl.edu 36 11 55842832 55842832 + Silent SNP A A T novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 A A A T A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 55842832 55842832 OR8K3 11 A A T 15 OR5AK3P genome.wustl.edu 36 11 56495547 56495547 + Silent SNP T T C novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 56495547 56495547 OR5AK3P 11 T T C 49 SMTNL1 219537 genome.wustl.edu 36 11 57067040 57067040 + Nonsense_Mutation SNP G G T novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 57067040 57067040 SMTNL1 11 G G T 33 PHF3 23469 genome.wustl.edu 36 6 64447911 64447911 + Missense_Mutation SNP A G G novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 A A G G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 64447911 64447911 PHF3 6 A G G 4 DLG2 1740 genome.wustl.edu 36 11 82858038 82858038 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 82858038 82858038 DLG2 11 C C T 31 SEMA3D 223117 genome.wustl.edu 36 7 84482414 84482414 + Missense_Mutation SNP A A G novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 A A A G A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 84482414 84482414 SEMA3D 7 A A G 8 COL24A1 255631 genome.wustl.edu 36 1 86106812 86106812 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 C C C T C C Unknown Valid Somatic 4 Capture Sanger_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 86106812 86106812 COL24A1 1 C C T 32 NTRK3 4916 genome.wustl.edu 36 15 86221209 86221209 + Missense_Mutation SNP C C A novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 86221209 86221209 NTRK3 15 C C A 21 GPR128 84873 genome.wustl.edu 36 3 101856536 101856536 + Missense_Mutation SNP C C A novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 101856536 101856536 GPR128 3 C C A 17 SORCS3 22986 genome.wustl.edu 36 10 106972958 106972958 + Silent SNP G G T novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 106972958 106972958 SORCS3 10 G G T 41 IRS4 8471 genome.wustl.edu 36 X 107863319 107863319 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 107863319 107863319 IRS4 23 G G A 47 TRPS1 7227 genome.wustl.edu 36 8 116495950 116495950 + Missense_Mutation SNP G G C novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 G G G C G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 116495950 116495950 TRPS1 8 G G C 34 ZCCHC8 55596 genome.wustl.edu 36 12 121532444 121532444 + Splice_Site_SNP SNP C C G novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 121532444 121532444 ZCCHC8 12 C C G 18 AASS 10157 genome.wustl.edu 36 7 121545713 121545713 + Missense_Mutation SNP T T G novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 121545713 121545713 AASS 7 T T G 53 ODZ1 10178 genome.wustl.edu 36 X 123613594 123613594 + Missense_Mutation SNP T T C novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 123613594 123613594 ODZ1 23 T T C 50 RABEPK 10244 genome.wustl.edu 36 9 127035868 127035868 + Missense_Mutation SNP T T C novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 127035868 127035868 RABEPK 9 T T C 51 KCNQ3 3786 genome.wustl.edu 36 8 133265706 133265706 + Nonsense_Mutation SNP G G A novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Nonsense_Mutation SNP 133265706 133265706 KCNQ3 8 G G A 39 VAV2 7410 genome.wustl.edu 36 9 135646788 135646788 + Missense_Mutation SNP C C A novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 C C C A C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 135646788 135646788 VAV2 9 C C A 20 LRP1B 53353 genome.wustl.edu 36 2 140930574 140930574 + Missense_Mutation SNP T T A novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 T T T A T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 140930574 140930574 LRP1B 2 T T A 60 LRP1B 53353 genome.wustl.edu 36 2 141175790 141175790 + Missense_Mutation SNP C C G novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 C C C G C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 141175790 141175790 LRP1B 2 C C G 18 IGSF9 57549 genome.wustl.edu 36 1 158179380 158179380 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 158179380 158179380 IGSF9 1 C C T 19 KCNJ10 3766 genome.wustl.edu 36 1 158277963 158277963 + Missense_Mutation SNP G G T novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 158277963 158277963 KCNJ10 1 G G T 42 ZBBX 79740 genome.wustl.edu 36 3 168498896 168498896 + Silent SNP T T C novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 T T T C T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 168498896 168498896 ZBBX 3 T T C 52 HAT1 8520 genome.wustl.edu 36 2 172552464 172552464 + Missense_Mutation SNP C C T novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 C C C T C C Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 172552464 172552464 HAT1 2 C C T 26 MAP3K13 9175 genome.wustl.edu 36 3 186648368 186648368 + Missense_Mutation SNP G G T novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 186648368 186648368 MAP3K13 3 G G T 44 PDLIM3 27295 genome.wustl.edu 36 4 186664680 186664680 + Silent SNP G A A novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 G G A A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Silent SNP 186664680 186664680 PDLIM3 4 G A A 40 CDK5R2 8941 genome.wustl.edu 36 2 219533673 219533673 + Missense_Mutation SNP G G T novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 219533673 219533673 CDK5R2 2 G G T 38 PSMD1 5707 genome.wustl.edu 36 2 231734360 231734360 + Missense_Mutation SNP G G T novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 G G G T G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 231734360 231734360 PSMD1 2 G G T 44 CHD7 55636 genome.wustl.edu 36 8 61913209 61913209 + Silent SNP A A G novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 A A A G A A Unknown Valid Somatic Phase_III Capture 454_PCR_WGA dbGAP Illumina GAIIx WashU Silent SNP 61913209 61913209 CHD7 8 A A G 3 ZMYM6 9204 genome.wustl.edu 36 1 35226961 35226961 + Missense_Mutation SNP A A C novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 A A A C A A Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 35226961 35226961 ZMYM6 1 A A C 4 ENSG00000196285 genome.wustl.edu 36 2 175292945 175292945 + Missense_Mutation SNP G G A novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 G G G A G G Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Missense_Mutation SNP 175292945 175292945 ENSG00000196285 2 G G A 42 ENSG00000162685 genome.wustl.edu 36 2 91207257 91207257 + Splice_Site_SNP SNP T T G novel Unknown TCGA-25-1315-01 TCGA-25-1315-10 T T T G T T Unknown Valid Somatic 4 Capture 454_PCR_WGA 1 dbGAP Illumina GAIIx WashU Splice_Site_SNP SNP 91207257 91207257 ENSG00000162685 2 T T G 55 DENND4B 9909 genome.wustl.edu 36 1 152170166 152170167 + Splice_Site_Ins INS - - G Unknown TCGA-25-1315-01 TCGA-25-1315-10 - - - G - - Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Splice_Site_Ins INS 152170166 152170167 DENND4B 1 - - G 55 C21orf7 56911 genome.wustl.edu 36 21 29468986 29468986 + Frame_Shift_Del DEL A A - Unknown TCGA-25-1315-01 TCGA-25-1315-10 A A A - A A Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Frame_Shift_Del DEL 29468986 29468986 C21orf7 21 A A - 10 ACAD9 28976 genome.wustl.edu 36 3 130107783 130107794 + Splice_Site_Del DEL GTGAGTGGCCCC GTGAGTGGCCCC - Unknown TCGA-25-1315-01 TCGA-25-1315-10 GTGAGTGGCCCC GTGAGTGGCCCC GTGAGTGGCCCC - GTGAGTGGCCCC GTGAGTGGCCCC Unknown Valid Somatic PhaseIII Capture 1 dbGAP Illumina GAIIx WashU Splice_Site_Del DEL 130107783 130107794 ACAD9 3 GTGAGTGGCCCC GTGAGTGGCCCC - 44