Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ADAM22	53616	hgsc.bcm.edu	36	7	87620519	87620519	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	87620519	87620519	ADAM22	7	G	G	C	35
AMICA1	120425	hgsc.bcm.edu	36	11	117579494	117579494	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	117579494	117579494	AMICA1	11	C	C	A	30
AMIGO2	347902	hgsc.bcm.edu	36	12	45758633	45758633	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	45758633	45758633	AMIGO2	12	C	C	T	29
ANK2	287	hgsc.bcm.edu	36	4	114398988	114398988	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	114398988	114398988	ANK2	4	A	A	G	2
ANKRD52	283373	hgsc.bcm.edu	36	12	54923432	54923432	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	54923432	54923432	ANKRD52	12	C	C	G	28
ARHGEF12	23365	hgsc.bcm.edu	36	11	119855911	119855911	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	119855911	119855911	ARHGEF12	11	C	C	T	28
BEND2	139105	hgsc.bcm.edu	36	X	18123369	18123369	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	18123369	18123369	BEND2	23	G	G	C	42
BIRC6	57448	hgsc.bcm.edu	36	2	32681599	32681599	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	32681599	32681599	BIRC6	2	C	C	T	19
BOD1L	259282	hgsc.bcm.edu	36	4	13221695	13221695	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	13221695	13221695	BOD1L	4	A	A	G	7
C1orf186	440712	hgsc.bcm.edu	36	1	204409822	204409822	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	204409822	204409822	C1orf186	1	C	C	G	25
C3orf23	285343	hgsc.bcm.edu	36	3	44384187	44384187	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	44384187	44384187	C3orf23	3	A	A	G	11
CACNA1G	8913	hgsc.bcm.edu	36	17	46033183	46033183	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	46033183	46033183	CACNA1G	17	C	C	G	30
CASC1	55259	hgsc.bcm.edu	36	12	25188836	25188836	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	25188836	25188836	CASC1	12	C	C	A	32
CCBE1	147372	hgsc.bcm.edu	36	18	55273109	55273109	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	55273109	55273109	CCBE1	18	T	T	G	56
CCDC158	339965	hgsc.bcm.edu	36	4	77502321	77502321	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	77502321	77502321	CCDC158	4	C	C	T	29
CD79A	973	hgsc.bcm.edu	36	19	47074976	47074976	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	47074976	47074976	CD79A	19	C	C	T	30
DCST2	127579	hgsc.bcm.edu	36	1	153265698	153265698	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	153265698	153265698	DCST2	1	C	C	A	19
DENND5B	160518	hgsc.bcm.edu	36	12	31433568	31433568	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	31433568	31433568	DENND5B	12	C	C	A	21
DNAH9	1770	hgsc.bcm.edu	36	17	11513178	11513178	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	11513178	11513178	DNAH9	17	C	C	T	23
DST	667	hgsc.bcm.edu	36	6	56530246	56530246	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	56530246	56530246	DST	6	T	T	A	60
ENO3	2027	hgsc.bcm.edu	36	17	4800876	4800876	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	4800876	4800876	ENO3	17	G	G	A	39
EPHB3	2049	hgsc.bcm.edu	36	3	185778418	185778418	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	185778418	185778418	EPHB3	3	A	A	C	8
F13A1	2162	hgsc.bcm.edu	36	6	6167388	6167388	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	6167388	6167388	F13A1	6	C	C	A	30
FUK	197258	hgsc.bcm.edu	36	16	69055049	69055049	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	69055049	69055049	FUK	16	G	G	T	43
GRK1	6011	hgsc.bcm.edu	36	13	113373856	113373856	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	113373856	113373856	GRK1	13	C	C	T	23
H3F3B	3021	hgsc.bcm.edu	36	17	71286798	71286799	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	71286798	71286799	H3F3B	17	-	-	G	27
HAVCR1	26762	hgsc.bcm.edu	36	5	156412146	156412147	+	In_Frame_Ins	INS	-	-	GTT	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	In_Frame_Ins	INS	156412146	156412147	HAVCR1	5	-	-	GTT	31
HMCN1	83872	hgsc.bcm.edu	36	1	184388576	184388576	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	184388576	184388576	HMCN1	1	G	G	T	48
HRNR	388697	hgsc.bcm.edu	36	1	150462318	150462318	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	150462318	150462318	HRNR	1	G	G	A	37
HYDIN	54768	hgsc.bcm.edu	36	16	69619066	69619066	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	69619066	69619066	HYDIN	16	C	C	T	21
IFNA8	3445	hgsc.bcm.edu	36	9	21399495	21399496	+	Frame_Shift_Del	DEL	AA	AA	-	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	AA	AA	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	21399495	21399496	IFNA8	9	AA	AA	-	9
IRAK3	11213	hgsc.bcm.edu	36	12	64925256	64925256	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	64925256	64925256	IRAK3	12	T	T	G	64
ITGA8	8516	hgsc.bcm.edu	36	10	15754732	15754732	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	15754732	15754732	ITGA8	10	A	A	G	5
ITGB7	3695	hgsc.bcm.edu	36	12	51877594	51877594	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	51877594	51877594	ITGB7	12	C	C	G	22
ITPR1	3708	hgsc.bcm.edu	36	3	4828092	4828092	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	4828092	4828092	ITPR1	3	G	G	C	35
KIR3DL1	3811	hgsc.bcm.edu	36	19	60023022	60023022	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	60023022	60023022	KIR3DL1	19	T	T	A	55
LACTB2	51110	hgsc.bcm.edu	36	8	71715796	71715796	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	71715796	71715796	LACTB2	8	T	T	C	52
LAMA1	284217	hgsc.bcm.edu	36	18	6961901	6961901	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	6961901	6961901	LAMA1	18	C	C	G	21
LPHN2	23266	hgsc.bcm.edu	36	1	82075294	82075294	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	82075294	82075294	LPHN2	1	T	T	C	60
MCCC1	56922	hgsc.bcm.edu	36	3	184237749	184237749	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	184237749	184237749	MCCC1	3	G	G	A	45
MDC1	9656	hgsc.bcm.edu	36	6	30788636	30788636	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	30788636	30788636	MDC1	6	A	A	G	8
MEIS3	56917	hgsc.bcm.edu	36	19	52604204	52604204	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	52604204	52604204	MEIS3	19	G	G	C	47
MUC16	94025	hgsc.bcm.edu	36	19	8947715	8947716	+	Frame_Shift_Ins	INS	-	-	ACTCATT	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	8947715	8947716	MUC16	19	-	-	ACTCATT	1
NOS2	4843	hgsc.bcm.edu	36	17	23125533	23125533	+	Nonsense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	23125533	23125533	NOS2	17	G	G	C	44
NOS3	4846	hgsc.bcm.edu	36	7	150329439	150329439	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	150329439	150329439	NOS3	7	G	G	C	38
PAPPA2	60676	hgsc.bcm.edu	36	1	175025638	175025638	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	175025638	175025638	PAPPA2	1	G	G	A	45
PASD1	139135	hgsc.bcm.edu	36	X	150593163	150593163	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	150593163	150593163	PASD1	23	C	C	T	20
PDE6A	5145	hgsc.bcm.edu	36	5	149304324	149304324	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	149304324	149304324	PDE6A	5	G	G	A	35
PEG3	5178	hgsc.bcm.edu	36	19	62020752	62020752	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	62020752	62020752	PEG3	19	T	T	C	64
PGLS	25796	hgsc.bcm.edu	36	19	17492837	17492837	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	17492837	17492837	PGLS	19	G	G	C	37
PPHLN1	51535	hgsc.bcm.edu	36	12	41122797	41122797	+	Missense_Mutation	SNP	A	A	A	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	41122797	41122797	PPHLN1	12	A	A	A	11
PROCA1	147011	hgsc.bcm.edu	36	17	24055007	24055007	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	24055007	24055007	PROCA1	17	A	A	C	5
PTK2	5747	hgsc.bcm.edu	36	8	141814569	141814569	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	141814569	141814569	PTK2	8	T	T	G	55
RASIP1	54922	hgsc.bcm.edu	36	19	53915885	53915885	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	53915885	53915885	RASIP1	19	G	G	C	39
RRM2B	50484	hgsc.bcm.edu	36	8	103313684	103313684	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	103313684	103313684	RRM2B	8	T	T	C	56
RUSC2	9853	hgsc.bcm.edu	36	9	35546372	35546372	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	35546372	35546372	RUSC2	9	G	G	T	34
SACS	26278	hgsc.bcm.edu	36	13	22808712	22808712	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	22808712	22808712	SACS	13	G	G	C	33
SERTAD4	56256	hgsc.bcm.edu	36	1	208479473	208479473	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	208479473	208479473	SERTAD4	1	G	G	A	35
SESN1	27244	hgsc.bcm.edu	36	6	109430209	109430209	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	109430209	109430209	SESN1	6	C	C	G	24
SIAH1	6477	hgsc.bcm.edu	36	16	46953802	46953802	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	46953802	46953802	SIAH1	16	G	G	C	35
SLC37A3	84255	hgsc.bcm.edu	36	7	139705029	139705029	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	139705029	139705029	SLC37A3	7	T	T	A	62
SLC5A10	125206	hgsc.bcm.edu	36	17	18857504	18857504	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	18857504	18857504	SLC5A10	17	G	G	A	39
SMC1A	8243	hgsc.bcm.edu	36	X	53453085	53453085	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	53453085	53453085	SMC1A	23	G	G	C	47
SMG6	23293	hgsc.bcm.edu	36	17	2149950	2149950	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	2149950	2149950	SMG6	17	G	G	A	48
SRC	6714	hgsc.bcm.edu	36	20	35464354	35464354	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	35464354	35464354	SRC	20	G	G	C	41
SRPRB	58477	hgsc.bcm.edu	36	3	135012709	135012709	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	135012709	135012709	SRPRB	3	T	T	C	61
STX3	6809	hgsc.bcm.edu	36	11	59311176	59311176	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	59311176	59311176	STX3	11	C	C	A	30
SVEP1	79987	hgsc.bcm.edu	36	9	112209763	112209763	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	112209763	112209763	SVEP1	9	C	C	T	29
TACR1	6869	hgsc.bcm.edu	36	2	75279455	75279455	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	75279455	75279455	TACR1	2	G	G	T	35
TARS	6897	hgsc.bcm.edu	36	5	33496903	33496903	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	454_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	33496903	33496903	TARS	5	C	C	G	29
TAT	6898	hgsc.bcm.edu	36	16	70163597	70163597	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	70163597	70163597	TAT	16	A	A	T	9
TMEM180	79847	hgsc.bcm.edu	36	10	104225481	104225481	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	104225481	104225481	TMEM180	10	T	T	A	62
TP53	7157	hgsc.bcm.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Sanger_PCR_WGA	.	.	SOLID	Baylor	Missense_Mutation	SNP	7519131	7519131	TP53	17	C	C	T	27
TRPV6	55503	hgsc.bcm.edu	36	7	142293269	142293269	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	142293269	142293269	TRPV6	7	G	G	T	34
TTN	7273	hgsc.bcm.edu	36	2	179107966	179107966	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	179107966	179107966	TTN	2	G	G	A	48
UBXN6	80700	hgsc.bcm.edu	36	19	4404963	4404963	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	4404963	4404963	UBXN6	19	A	A	C	7
USH2A	7399	hgsc.bcm.edu	36	1	214078021	214078021	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1318-01	TCGA-25-1318-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_IV	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	214078021	214078021	USH2A	1	T	T	A	64