Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
ACSL4	2182	hgsc.bcm.edu	36	X	108810946	108810946	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	108810946	108810946	ACSL4	23	G	G	T	43
ADCY2	108	hgsc.bcm.edu	36	5	7765980	7765980	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7765980	7765980	ADCY2	5	G	G	T	47
APEX1	328	hgsc.bcm.edu	36	14	19995274	19995274	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	19995274	19995274	APEX1	14	G	G	T	41
APLF	200558	hgsc.bcm.edu	36	2	68594309	68594309	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	68594309	68594309	APLF	2	C	C	T	29
ATG3	64422	hgsc.bcm.edu	36	3	113751742	113751742	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	113751742	113751742	ATG3	3	C	C	G	21
BEND3	57673	hgsc.bcm.edu	36	6	107496760	107496760	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	107496760	107496760	BEND3	6	C	C	T	26
BRCA1	672	hgsc.bcm.edu	36	17	38499517	38499517	+	Frame_Shift_Del	DEL	C	C	-	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Del	DEL	38499517	38499517	BRCA1	17	C	C	-	32
C11orf63	79864	hgsc.bcm.edu	36	11	122261782	122261782	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	122261782	122261782	C11orf63	11	A	A	T	2
CAT	847	hgsc.bcm.edu	36	11	34439404	34439404	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	34439404	34439404	CAT	11	C	C	T	23
CCNH	902	hgsc.bcm.edu	36	5	86736503	86736503	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	86736503	86736503	CCNH	5	C	C	T	23
CHD1L	9557	hgsc.bcm.edu	36	1	145222748	145222748	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	145222748	145222748	CHD1L	1	T	T	C	64
CORO2A	7464	hgsc.bcm.edu	36	9	99928679	99928679	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	99928679	99928679	CORO2A	9	T	T	A	52
EPS8L3	79574	hgsc.bcm.edu	36	1	110103248	110103248	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	110103248	110103248	EPS8L3	1	C	C	A	32
FCGBP	8857	hgsc.bcm.edu	36	19	45100661	45100661	+	Missense_Mutation	SNP	C	G	G	rs45613437	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	45100661	45100661	FCGBP	19	C	G	G	19
FCRL3	115352	hgsc.bcm.edu	36	1	155932605	155932605	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	155932605	155932605	FCRL3	1	T	T	A	54
FOSB	2354	hgsc.bcm.edu	36	19	50665777	50665777	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	50665777	50665777	FOSB	19	C	C	G	23
GCKR	2646	hgsc.bcm.edu	36	2	27583621	27583621	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	27583621	27583621	GCKR	2	G	G	A	40
GPRIN3	285513	hgsc.bcm.edu	36	4	90388256	90388256	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	90388256	90388256	GPRIN3	4	G	G	C	48
HEATR1	55127	hgsc.bcm.edu	36	1	234823964	234823964	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	234823964	234823964	HEATR1	1	C	C	A	29
HMCN1	83872	hgsc.bcm.edu	36	1	184145146	184145146	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	184145146	184145146	HMCN1	1	A	A	G	6
HS6ST3	266722	hgsc.bcm.edu	36	13	96282995	96282995	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	96282995	96282995	HS6ST3	13	G	G	A	44
HUWE1	10075	hgsc.bcm.edu	36	X	53672270	53672270	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	53672270	53672270	HUWE1	23	G	G	T	47
DCAF6	55827	hgsc.bcm.edu	36	1	166299619	166299619	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	166299619	166299619	DCAF6	1	A	A	G	4
KDELC1	79070	hgsc.bcm.edu	36	13	102239516	102239516	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	102239516	102239516	KDELC1	13	C	C	T	25
KIF7	374654	hgsc.bcm.edu	36	15	87989647	87989647	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	87989647	87989647	KIF7	15	G	G	A	42
MEOX2	4223	hgsc.bcm.edu	36	7	15618640	15618640	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	15618640	15618640	MEOX2	7	T	T	G	54
NALCN	259232	hgsc.bcm.edu	36	13	100827077	100827077	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	100827077	100827077	NALCN	13	A	A	G	7
PAMR1	25891	hgsc.bcm.edu	36	11	35414034	35414034	+	Nonsense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Nonsense_Mutation	SNP	35414034	35414034	PAMR1	11	G	G	T	46
PDZD7	79955	hgsc.bcm.edu	36	10	102770424	102770424	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	102770424	102770424	PDZD7	10	T	T	C	54
PGAP3	93210	hgsc.bcm.edu	36	17	35097631	35097631	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	35097631	35097631	PGAP3	17	T	T	C	52
PGR	5241	hgsc.bcm.edu	36	11	100427471	100427471	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	100427471	100427471	PGR	11	T	T	A	51
PIGT	51604	hgsc.bcm.edu	36	20	43487817	43487817	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	43487817	43487817	PIGT	20	A	A	C	7
PRSS27	83886	hgsc.bcm.edu	36	16	2703552	2703552	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	2703552	2703552	PRSS27	16	C	C	G	24
SLAMF7	57823	hgsc.bcm.edu	36	1	158984742	158984742	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	158984742	158984742	SLAMF7	1	C	C	A	17
SPATA18	132671	hgsc.bcm.edu	36	4	52630789	52630789	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	52630789	52630789	SPATA18	4	G	G	C	39
SPRED1	161742	hgsc.bcm.edu	36	15	36430643	36430643	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	36430643	36430643	SPRED1	15	A	A	C	12
STX5	6811	hgsc.bcm.edu	36	11	62355160	62355161	+	Frame_Shift_Ins	INS	-	-	G	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Frame_Shift_Ins	INS	62355160	62355161	STX5	11	-	-	G	55
TEX15	56154	hgsc.bcm.edu	36	8	30822741	30822741	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	30822741	30822741	TEX15	8	C	C	G	20
TINAG	27283	hgsc.bcm.edu	36	6	54299591	54299591	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	54299591	54299591	TINAG	6	G	G	A	41
TOR1AIP1	26092	hgsc.bcm.edu	36	1	178153307	178153307	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	178153307	178153307	TOR1AIP1	1	C	C	A	32
TP53	7157	hgsc.bcm.edu	36	17	7519138	7519138	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7519138	7519138	TP53	17	C	C	A	17
TP53	7157	hgsc.bcm.edu	36	17	7519192	7519192	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	7519192	7519192	TP53	17	T	T	C	59
TRIM40	135644	hgsc.bcm.edu	36	6	30223553	30223553	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Silent	SNP	30223553	30223553	TRIM40	6	C	C	G	22
TRIO	7204	hgsc.bcm.edu	36	5	14535753	14535753	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	14535753	14535753	TRIO	5	T	T	A	51
WDR13	64743	hgsc.bcm.edu	36	X	48342266	48342266	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	48342266	48342266	WDR13	23	C	C	T	23
YY1AP1	55249	hgsc.bcm.edu	36	1	153896254	153896254	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	153896254	153896254	YY1AP1	1	C	C	G	24
ZNF277	11179	hgsc.bcm.edu	36	7	111745520	111745520	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-25-1630-01	TCGA-25-1630-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_III	Capture	Unknown	.	.	SOLID	Baylor	Missense_Mutation	SNP	111745520	111745520	ZNF277	7	T	T	G	62